| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,508,429 – 10,508,524 |
| Length | 95 |
| Max. P | 0.823523 |
| Location | 10,508,429 – 10,508,524 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.93 |
| Shannon entropy | 0.43785 |
| G+C content | 0.40120 |
| Mean single sequence MFE | -16.22 |
| Consensus MFE | -8.31 |
| Energy contribution | -9.31 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10508429 95 + 27905053 -----CAGAU-AAAGUCAACGAACUUAGGAAACUUUA-CCACACGGCUAAACUUUUCCACAUAAAAAGUC----UUCCCACUAAAAGUUCGAUGGCCAAUAAAAAU -----.....-...((((.(((((((.(((((.((((-((....)).))))..)))))........(((.----.....)))..))))))).)))).......... ( -18.70, z-score = -3.25, R) >droSim1.chr3R 16562801 97 - 27517382 -----CACAU-AAAGUCAACGAACUUAGGAAACUUUA-CCACACGGCUAAAGUUUUCCGCAUAAAAAGUCA--UUUCCCACUAAAAGUUCGAUGGCCAACAAAAAU -----.....-...((((.(((((((.((((((((((-((....)).)))))))))).........(((..--......)))..))))))).)))).......... ( -22.70, z-score = -4.59, R) >droSec1.super_0 9694472 97 - 21120651 -----CACAU-AAAGUCAACGAACUUAGGAAACUUUA-CCACACGGCUAAAGUUUUUCGCAUAAAAAGUCA--UUUCCCACUAAAAGUUCGAUGGCCAAGAAAAAU -----.....-...((((.(((((((.((((((((((-((....)).)))))))))).........(((..--......)))..))))))).)))).......... ( -20.60, z-score = -3.31, R) >droYak2.chr3R 12907598 94 - 28832112 -----CAGAU-AAAGUCAACGAACUU-GUAAACUUUA-CCACAAGGCUGAACUUUUCCGCAUAAAAAGUC----UUCCGACUAAAAGUUCGAUGGCCAACAACAUU -----..(.(-(((((..(((....)-))..))))))-.)....((((((((((((..........((((----....))))))))))))...))))......... ( -18.10, z-score = -1.97, R) >droEre2.scaffold_4770 10042894 95 + 17746568 -----CAGAU-AAAGUCAACGAACUUGGGAAACUUUA-CCACAACGCUAAACUUUUCCACCUAAAAAGUC----UUCCCACUAAAAGUUCGAUGGCCAACAAAAUU -----.....-...((((.(((((((((((((((((.-..........................))))).----)))))).....)))))).)))).......... ( -19.13, z-score = -2.93, R) >dp4.chr2 19989957 104 - 30794189 CAUCCCAUGCCAAAGUCAAAGAACUCAUAAAACUCGAGCCACAAGGCC-AAUUGUCACACCCCCAAAGCCCCUCUUCUUGCCAAGAAUUCGAUG-CCACAAAAACU .................................(((((((....))).-.......................((((......))))..))))..-........... ( -7.40, z-score = 1.34, R) >droPer1.super_0 9669856 103 + 11822988 CAUCCCAUGCCAAAGUCAAAGAACUCAUAAAACUCGAGCCACAAGGCC-AAUUGUCACACCCCCAAAGCCC-UCCUCUCGCCAAGAAUUCGAUG-CCACAAAAACU ..............(.((..(((.((.........(.(((....))))-..................((..-.......))...)).)))..))-.)......... ( -6.90, z-score = 1.23, R) >consensus _____CAGAU_AAAGUCAACGAACUUAGGAAACUUUA_CCACAAGGCUAAACUUUUCCACAUAAAAAGUC____UUCCCACUAAAAGUUCGAUGGCCAACAAAAAU ..............((((.(((((((((....))..........((((..................))))..............))))))).)))).......... ( -8.31 = -9.31 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:35 2011