| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,474,368 – 10,474,425 |
| Length | 57 |
| Max. P | 0.992785 |
| Location | 10,474,368 – 10,474,425 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 80.04 |
| Shannon entropy | 0.35971 |
| G+C content | 0.33238 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -11.26 |
| Energy contribution | -11.10 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.57 |
| SVM RNA-class probability | 0.992785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10474368 57 + 27905053 AAUACCAUAUAUCAAAAGUUGGAACCUGUUCAUAUUGAAGUUCAGGUUCUGAAAUUA ..................(..(((((((..(........)..)))))))..)..... ( -13.40, z-score = -2.41, R) >droEre2.scaffold_4770 10008076 55 + 17746568 --CAUUAUGCUUUAAAAGCGGGAACCUGUUCAUAUUGAAGUUCAGGUUCUCAAAUUA --......(((.....)))(((((((((..(........)..)))))))))...... ( -16.90, z-score = -4.29, R) >droYak2.chr3R 12873026 55 - 28832112 --AAUGGCGGUUUGAAAGCGGCGACCUGUUCUUAUUCAAGUUCAGGUUCUGAAUUUA --....((.(((....))).))((((((..(((....)))..))))))......... ( -13.40, z-score = -1.18, R) >droSec1.super_0 9557652 55 - 21120651 AAUAGCAUAUUU--AAAGCUGGAACCUGUUUAUAUUGAAGUUCAGGUUCUGAAAUUA ...(((......--...)))((((((((..(........)..))))))))....... ( -11.40, z-score = -1.75, R) >droSim1.chr3R 16528865 55 - 27517382 AAUAGCAUAUUU--AAAGCUGGAACCUGUUCAUAUUGAAGUUCAGGUUCUGAAAUUA ...(((......--...)))((((((((..(........)..))))))))....... ( -12.90, z-score = -2.27, R) >consensus AAUAGCAUAUUU__AAAGCUGGAACCUGUUCAUAUUGAAGUUCAGGUUCUGAAAUUA ...................(((((((((..(........)..)))))))))...... (-11.26 = -11.10 + -0.16)
| Location | 10,474,368 – 10,474,425 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 80.04 |
| Shannon entropy | 0.35971 |
| G+C content | 0.33238 |
| Mean single sequence MFE | -9.95 |
| Consensus MFE | -6.88 |
| Energy contribution | -7.28 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10474368 57 - 27905053 UAAUUUCAGAACCUGAACUUCAAUAUGAACAGGUUCCAACUUUUGAUAUAUGGUAUU ........(((((((...(((.....))))))))))..................... ( -9.80, z-score = -1.10, R) >droEre2.scaffold_4770 10008076 55 - 17746568 UAAUUUGAGAACCUGAACUUCAAUAUGAACAGGUUCCCGCUUUUAAAGCAUAAUG-- ......(.(((((((...(((.....)))))))))).)(((.....)))......-- ( -12.40, z-score = -3.45, R) >droYak2.chr3R 12873026 55 + 28832112 UAAAUUCAGAACCUGAACUUGAAUAAGAACAGGUCGCCGCUUUCAAACCGCCAUU-- ........((.((((..(((....)))..))))))....................-- ( -6.30, z-score = -0.16, R) >droSec1.super_0 9557652 55 + 21120651 UAAUUUCAGAACCUGAACUUCAAUAUAAACAGGUUCCAGCUUU--AAAUAUGCUAUU ........(((((((..............))))))).(((...--......)))... ( -9.84, z-score = -2.60, R) >droSim1.chr3R 16528865 55 + 27517382 UAAUUUCAGAACCUGAACUUCAAUAUGAACAGGUUCCAGCUUU--AAAUAUGCUAUU ........(((((((...(((.....)))))))))).(((...--......)))... ( -11.40, z-score = -2.78, R) >consensus UAAUUUCAGAACCUGAACUUCAAUAUGAACAGGUUCCAGCUUU__AAAUAUGAUAUU ........(((((((..............)))))))..................... ( -6.88 = -7.28 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:31 2011