| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,460,869 – 10,460,966 |
| Length | 97 |
| Max. P | 0.616580 |
| Location | 10,460,869 – 10,460,966 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 65.41 |
| Shannon entropy | 0.64076 |
| G+C content | 0.31447 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -8.16 |
| Energy contribution | -9.05 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10460869 97 + 27905053 CUUGAAGUUGUGCA-------AAAUAAAAUCGUAAUAUAAAUUCGACCAGAUAUCAAAAAUGACAAUGUGUCGUGUUUAAAAAUGGUUUGCUUAUCCGU----AUAAU------- ......(((((((.-------.....(((((((....(((((.((((((....(((....)))...)).)))).)))))...)))))))........))----)))))------- ( -16.14, z-score = -1.34, R) >droSim1.chr3R 16514741 115 - 27517382 CUUGAAGUUGUGCAAAAUACAAAAUAAAAUCGGAAUUUAAAUUCGACCAGAUAUCAAAGAUGGCAAUGUGUCGUGUUUAAAAAUGGUUUGCUUAUCCAUUUCUGUGAUGUAUAAU ......((((((((............((((((...(((((((.((((((..((((...))))....)).)))).)))))))..)))))).......(((....))).)))))))) ( -20.60, z-score = -0.63, R) >droSec1.super_0 9544248 108 - 21120651 CUUGAAGUUGUGCA-------AAAUAAAAUCGGAAUAUAAAUUCGACCAGAUAUCAAACAUGGCAAUGUGUCGUGUUUAAAAAUGGUUUGCUUAUCCAUUUCUGUGAUGUACAAU ......((((((((-------........(((((.......)))))(((((....(((((((((.....)))))))))...(((((.........))))))))).).)))))))) ( -25.70, z-score = -2.39, R) >droYak2.chr3R 12859452 108 - 28832112 CUUGCAGUUGUGCA-------AAAUAAAAUCUGAGUAUAAAUUCGAUCUGAUAUGAAACAUGGCAAUGUGUCGUGUCUAAAAUUGGUUUGAUUAUCCGUUUCACCGAUUCAUAAU .(((((....))))-------)......(((.((((....)))))))..(((((((.((((....)))).)))))))...(((((((..(((.....)))..)))))))...... ( -20.90, z-score = -0.72, R) >droEre2.scaffold_4770 9994271 108 + 17746568 CUUCCAGUCAAAAUA------AAAUCUGAAUAUAAUAUAAAUGCGACC-GAUAUCAAACAUGGCAAUUUGUCGUGUUUAAAUAUGGUUUGCUUAUCCAUUUUUUCGAUUCAUAAU ...............------.((((.(((...(((......((((((-.((((.(((((((((.....)))))))))..)))))).))))......)))..)))))))...... ( -18.10, z-score = -1.15, R) >triCas2.ChLG2 6710044 83 + 12900155 -CUCAAAUU-UGCU----------UACACUUUUAAGCGAGCCUCGUCCAUCUUUUAGAAAUUUAAUUUGGUAACUUUCACGAGUGGUGUUAUGAU-------------------- -.(((..((-((((----------((......))))))))(((((((((..((..(....)..))..)))........))))).)......))).-------------------- ( -13.00, z-score = -0.12, R) >consensus CUUGAAGUUGUGCA_______AAAUAAAAUCGGAAUAUAAAUUCGACCAGAUAUCAAACAUGGCAAUGUGUCGUGUUUAAAAAUGGUUUGCUUAUCCAUUUCUGUGAU__AUAAU ............................................(((((......(((((((((.....))))))))).....)))))........................... ( -8.16 = -9.05 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:28 2011