| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,436,362 – 7,436,415 |
| Length | 53 |
| Max. P | 0.990863 |
| Location | 7,436,362 – 7,436,415 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 82.46 |
| Shannon entropy | 0.24050 |
| G+C content | 0.31343 |
| Mean single sequence MFE | -11.20 |
| Consensus MFE | -10.60 |
| Energy contribution | -10.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.44 |
| SVM RNA-class probability | 0.990863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7436362 53 + 23011544 ------UUUGCGUAUACGUAAUUUGCUGCGUAUACUUAAUUUUUAAGUAUCCAUCAUUG ------.....(((((((((......)))))))))........................ ( -10.60, z-score = -2.51, R) >droYak2.chr2L 16861499 59 - 22324452 UUACACAUUGCGUAUACGUAAUUUGCUGCGUAUACUUAAUUUUUAAGUGUCCAUCAUUU ..((((((((.(((((((((......))))))))).))))......))))......... ( -12.40, z-score = -2.58, R) >droEre2.scaffold_4929 16355585 51 + 26641161 --------UGCGUAUACGUAAUAAGCUGCGUAUACUUAAUUUUUAAGUACCCGUCAUUA --------...(((((((((......)))))))))........................ ( -10.60, z-score = -1.71, R) >consensus _______UUGCGUAUACGUAAUUUGCUGCGUAUACUUAAUUUUUAAGUAUCCAUCAUUA ...........(((((((((......)))))))))........................ (-10.60 = -10.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:42 2011