| Sequence ID | dm3.chr2L |
|---|---|
| Location | 713,830 – 713,886 |
| Length | 56 |
| Max. P | 0.692850 |
| Location | 713,830 – 713,886 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 84.28 |
| Shannon entropy | 0.30886 |
| G+C content | 0.37847 |
| Mean single sequence MFE | -8.81 |
| Consensus MFE | -6.57 |
| Energy contribution | -6.57 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 713830 56 + 23011544 GAUUACCAAUUUGACUAUUUCAAGUUGUUUUCGCUCCUGUUUCUCCAGCCCAAGAA--- ((..((.(((((((.....)))))))))..))....(((......)))........--- ( -7.20, z-score = -1.22, R) >droSim1.chr2L 715547 56 + 22036055 GAUUACCAAUUUGACUAUUUCAAGUUGUUUUCGCUCCUGUUUCUCCAGACCAAGAA--- ((..((.(((((((.....)))))))))..))....(((......)))........--- ( -7.90, z-score = -1.14, R) >droSec1.super_14 685811 59 + 2068291 GAUUACCAAUUUGACUAUUUCAAGUUGUUUUCGCUCCUGUUUCUCCAGACCAAGAAAAA ......((((((((.....))))))))(((((....(((......))).....))))). ( -9.50, z-score = -1.75, R) >droYak2.chr2L 696164 59 + 22324452 GAUUACCAAUUUGACUAUUUCAAGUUGUUUUCGCUCCUGUUUCCCCAGCACAAAAAAAG ((..((.(((((((.....)))))))))..))(((...........))).......... ( -7.70, z-score = -1.74, R) >droEre2.scaffold_4929 767355 59 + 26641161 GAUUACCAAUUUGACUAUUUCAAGUUGUUUUCGCUCCUGUUUCCCCAGCACAAGAAAAU ......((((((((.....))))))))(((((....(((......))).....))))). ( -9.30, z-score = -2.18, R) >droWil1.scaffold_180772 6385405 54 - 8906247 GAUUACCAAUUUGACUAUUUCAAGUUGUUUUCAUUUCGGUGGCU--ACCACAAAAA--- ((..((.(((((((.....)))))))))..))......((((..--.)))).....--- ( -10.30, z-score = -1.88, R) >droVir3.scaffold_12963 19206262 56 + 20206255 GAUUACCAAUUUGACUAUUUCAAGUUGUUUUCCUUGCUGCUGCAGCUGCCGACGCA--- ......((((((((.....)))))))).......(((..(.((....)).)..)))--- ( -9.80, z-score = -0.49, R) >consensus GAUUACCAAUUUGACUAUUUCAAGUUGUUUUCGCUCCUGUUUCUCCAGCCCAAGAA___ ((..((.(((((((.....)))))))))..))........................... ( -6.57 = -6.57 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:40 2011