#NEXUS [written Thu May 27 23:10:38 CEST 2010 by Mesquite version 2.72 (build 527) at nobi/192.168.1.4] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=78; TAXLABELS Trichoplax_adhaerens Nematostella_vectensis Hydra_magnipapillata Schmidtea_mediterranea Schistosoma_mansoni Echinococcus_multilocularis Trichinella_spiralis Brugia_malayi Ascaris_suum Meloidogyne_incognita Meloidogyne_hapla Pristionchus_pacificus Haemonchus_contortus Caenorhabditis_elegans Caenorhabditis_briggsae Ixodes_scapularis Daphnia_pulex Pediculus_humanus Acyrthosiphon_pisum Apis_mellifera Tribolium_castaneum Bombyx_mori Anopheles_gambiae Aedes_aegypti Drosophila_virilis Drosophila_mojavensis Drosophila_grimshawi Drosophila_willistoni Drosophila_pseudoobscura Drosophila_persimilis Drosophila_yakuba Drosophila_erecta Drosophila_simulans Drosophila_sechellia Drosophila_melanogaster Drosophila_ananassae Biomphalaria_glabrata Aplysia_californica Lottia_gigantea Euprymna_scolopes Spisula_solidissima Cerebratulus_lacteus Capitella_capitata Helobdella_robusta Strongylocentrotus_purpuratus Branchiostoma_floridae Ciona_intestinalis Oikopleura_dioica Petromyzon_marinus Callorhinchus_milii Tetraodon_nigroviridis Takifugu_rubripes Oryzias_latipes Gasterosteus_aculeatus Danio_rerio Xenopus_tropicalis Anolis_carolinensis Taeniopygia_guttata Gallus_gallus Ornithorhynchus_anatinus Dasypus_novemcinctus Loxodonta_africana Homo_sapiens Pan_troglodytes Pongo_pygmaeus Macaca_mulatta Microcebus_murinus Oryctolagus_cuniculus Cavia_porcellus Mus_musculus Rattus_norvegicus Erinaceus_europaeus Sorex_araneus Felis_catus Canis_familiaris Equus_caballus Sus_scrofa Bos_taurus ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "CG-depletion_tree.nex"'; DIMENSIONS NCHAR=7; FORMAT DATATYPE = CONTINUOUS GAP = - MISSING = ?; CHARSTATELABELS 1 TG, 2 CA, 3 CG, 4 '(TG+CA)/2*CG', 5 'log_TG+CA/2*CG', 6 Genome_size, 7 log_genome_size ; MATRIX Trichoplax_adhaerens 1.23087 1.15496 0.953585 1.170083476 2.45966018626718 0.26 0.602059991 Nematostella_vectensis 1.09985 1.09907 0.78309 1.404002094 2.64191189004954 0.23 1.361727836 Hydra_magnipapillata 1.09052 1.0937 0.757807 1.441145305 2.66802324115264 1.0 2.0 Schmidtea_mediterranea 1.05681 1.05639 1.03638 1.019510218 2.32190742653627 0.72 1.857332496 Schistosoma_mansoni 1.14489 1.14484 0.776455 1.47447695 2.69088840972728 0.26 1.414973348 Echinococcus_multilocularis 1.14667 1.14691 0.739922 1.549879582 2.74076233187499 0.45 1.653212514 Trichinella_spiralis 1.23087 1.15496 0.953585 1.2509792 2.52651169764195 0.26 1.414973348 Brugia_malayi 1.11904 1.10434 0.784645 1.416806326 2.65099036546209 0.11 1.041392685 Ascaris_suum 1.10826 1.0943 1.03273 1.066377466 2.36685245174542 0.25 1.397940009 Meloidogyne_incognita 0.928737 0.87515 0.954095 0.945339301 2.24637372574035 0.05 0.698970004 Meloidogyne_hapla 0.986239 0.985387 0.876953 1.124134361 2.41959837557764 0.045 0.653212514 Pristionchus_pacificus 1.02798 1.02739 1.00364 1.023957794 2.32626040196505 0.17 1.230448921 Haemonchus_contortus 1.06512 1.04096 0.87282 1.206480145 2.49029224224867 0.06 0.77815125 Caenorhabditis_elegans 1.08262 1.08098 0.99446 1.087826559 2.38676681603642 0.1 1.0 Caenorhabditis_briggsae 1.03802 1.03869 0.939666 1.105025615 2.40245360869056 0.12 1.079181246 Ixodes_scapularis 1.025 1.02799 1.09968 0.933448821 2.23371595063804 2.48 2.394451681 Daphnia_pulex 1.03397 0.995466 0.994716 1.020108252 2.32249384407066 0.29 1.462397998 Pediculus_humanus 0.841316 0.832313 1.47705 0.566544464 1.73438538036722 0.11 1.041392685 Acyrthosiphon_pisum 1.03369 1.03346 1.26765 0.815347296 2.09844396654649 0.31 1.491361694 Apis_mellifera 0.83614 0.835447 1.65848 0.50395151 1.61730986713731 0.19 1.278753601 Tribolium_castaneum 1.0383 1.03802 1.15426 0.899416076 2.19657556232709 0.21 1.322219295 Bombyx_mori 1.00044 1.00089 1.13878 0.878716697 2.17329235826785 0.525 1.720159303 Anopheles_gambiae 1.12003 1.12007 1.06772 1.049010977 2.35043288660512 0.27 1.431363764 Aedes_aegypti 1.08547 1.08526 0.982116 1.105129129 2.40254727995983 0.83 1.919078092 Drosophila_virilis 1.1712 1.1713 0.946706 1.237184511 2.51542333534581 0.365 1.562292864 Drosophila_mojavensis 1.16299 1.16342 0.939306 1.238366411 2.51637819357902 0.17 1.230448921 Drosophila_grimshawi 1.20254 1.20057 0.923797 1.300669952 2.56546457240783 0.245 1.389166084 Drosophila_willistoni 1.13553 1.13558 0.861848 1.317581522 2.578382968794 0.225 1.352182518 Drosophila_pseudoobscura 1.12337 1.12215 0.859057 1.306967989 2.57029503536986 0.17 1.230448921 Drosophila_persimilis 1.11226 1.11131 0.872402 1.27439529 2.54505687674404 0.19 1.278753601 Drosophila_yakuba 1.12113 1.12142 0.916161 1.22388423 2.50461468927756 0.17 1.230448921 Drosophila_erecta 1.12107 1.12049 0.91371 1.226625516 2.50685200920494 0.15 1.176091259 Drosophila_simulans 1.11774 1.11755 0.930523 1.201093364 2.48581737162162 0.15 1.176091259 Drosophila_sechellia 1.11418 1.1148 0.949302 1.174009957 2.46301029562463 0.17 1.230448921 Drosophila_melanogaster 1.10642 1.10745 0.940505 1.176958124 2.46551834204962 0.18 1.255272505 Drosophila_ananassae 1.03873 1.03438 0.922892 1.12315959 2.41873086907214 0.2 1.301029996 Biomphalaria_glabrata 1.13223 1.10262 0.670796 1.665819415 2.81290223650586 0.95 1.977723605 Aplysia_californica 1.11662 1.13311 0.677402 1.660557542 2.80973850764594 1.9 2.278753601 Lottia_gigantea 1.12049 1.07254 0.705341 1.55458849 2.74379596694684 0.43 1.633468456 Euprymna_scolopes 1.00837 1.1563 0.811523 1.333708348 2.59054838689937 3.75 2.574031268 Spisula_solidissima 1.06058 1.12464 0.796047 1.372544586 2.61925147211386 1.18 2.071882007 Cerebratulus_lacteus 1.16661 1.2021 0.675252 1.753945194 2.86445274016168 1.4 2.146128036 Capitella_capitata 1.20205 1.20166 0.842658 1.426266647 2.65764538698686 0.24 1.380211242 Helobdella_robusta 1.20326 1.15317 0.890625 1.32290807 2.58241748969597 0.4 1.602059991 Strongylocentrotus_purpuratus 1.15306 1.15188 0.67556 1.705947658 2.83670586046742 0.89 1.949390007 Branchiostoma_floridae 1.22115 1.2214 0.664414 1.838123519 2.9113303176075 0.59 1.770852012 Ciona_intestinalis 1.1587 1.15792 0.873276 1.326396237 2.5850507613865 0.2 1.301029996 Oikopleura_dioica 1.00066 0.956841 1.18972 0.822672982 2.10738858700088 0.07 0.84509804 Petromyzon_marinus 1.22362 1.22269 0.809567 1.510875567 2.71527442147068 2.11 2.324282455 Callorhinchus_milii 1.25141 1.23578 0.489379 2.541169523 3.23520951017953 1.94 2.28780173 Tetraodon_nigroviridis 1.22674 1.22708 0.603684 2.032371241 3.01178830336567 0.42 1.62324929 Takifugu_rubripes 1.24875 1.24943 0.565089 2.210430569 3.09577241714908 0.4 1.602059991 Oryzias_latipes 1.24369 1.2436 0.483352 2.572959251 3.24764178901317 1.08 2.033423755 Gasterosteus_aculeatus 1.22562 1.22551 0.658168 1.862085364 2.92428211612566 0.64 1.806179974 Danio_rerio 1.25933 1.2585 0.534402 2.3557453 3.15944224597846 1.78 2.250420002 Xenopus_tropicalis 1.20856 1.20891 0.346583 3.48757729 3.55179240190312 1.74 2.240549248 Anolis_carolinensis 1.22522 1.22506 0.295574 4.144951856 3.72447626655607 2.25 2.352182518 Taeniopygia_guttata 1.27602 1.23824 0.268158 4.68801975 3.84759535814384 1.25 2.096910013 Gallus_gallus 1.26635 1.2663 0.250424 5.056723796 3.92330389544721 1.25 2.096910013 Ornithorhynchus_anatinus 1.13724 1.13534 0.377665 3.008724663 3.40410138196862 3.06 2.485721426 Dasypus_novemcinctus 1.17942 1.1792 0.244041 4.832425699 3.8779336497046 5.41 2.733197265 Loxodonta_africana 1.19914 1.19886 0.260776 4.59781575 3.82816644676181 4.275 2.630936119 Homo_sapiens 1.20117 1.20149 0.235653 5.097876963 3.93140926429031 3.5 2.544068044 Pan_troglodytes 1.20268 1.20322 0.236287 5.091054523 3.93007007754065 3.695 2.567614443 Pongo_pygmaeus 1.20674 1.20688 0.232887 5.181955197 3.94776752920697 3.66 2.563481085 Macaca_mulatta 1.19253 1.19261 0.251152 4.748399376 3.86039268077859 3.365 2.526985069 Microcebus_murinus 1.17094 1.17097 0.281818 4.155004294 3.72689855475459 3.12 2.494154594 Oryctolagus_cuniculus 1.19778 1.19765 0.289412 4.138442774 3.7229046685264 3.26 2.5132176 Cavia_porcellus 1.21777 1.21624 0.214738 5.667394686 4.03731461413007 3.78 2.5774918 Mus_musculus 1.22536 1.22546 0.190639 6.427908245 4.16323426649861 3.295 2.517855419 Rattus_norvegicus 1.22441 1.22417 0.219864 5.568396827 4.01969228270359 3.27 2.514547753 Erinaceus_europaeus 1.16897 1.16909 0.206959 5.648606729 4.03399401110528 3.66 2.563481085 Sorex_araneus 1.18678 1.18687 0.299071 3.968372059 3.68094104288997 2.91 2.463892989 Felis_catus 1.1525 1.15295 0.346816 3.323736506 3.50367469668876 3.1 2.491361694 Canis_familiaris 1.15483 1.15542 0.259722 4.447543912 3.79493710691519 3.14 2.496929648 Equus_caballus 1.18257 1.18254 0.285657 4.139772524 3.72322593342797 3.18 2.50242712 Sus_scrofa 1.18731 1.1874 0.270967 4.381917355 3.78007147387993 3.09 2.489958479 Bos_taurus 1.21077 1.21107 0.233832 5.178589757 3.94711786451591 3.65 2.562292864 ; END; BEGIN TREES; Title MetazoanTree; LINK Taxa = Taxa; TRANSLATE 1 Trichoplax_adhaerens, 2 Nematostella_vectensis, 3 Hydra_magnipapillata, 4 Schmidtea_mediterranea, 5 Schistosoma_mansoni, 6 Echinococcus_multilocularis, 7 Trichinella_spiralis, 8 Brugia_malayi, 9 Ascaris_suum, 10 Meloidogyne_incognita, 11 Meloidogyne_hapla, 12 Pristionchus_pacificus, 13 Haemonchus_contortus, 14 Caenorhabditis_elegans, 15 Caenorhabditis_briggsae, 16 Ixodes_scapularis, 17 Daphnia_pulex, 18 Pediculus_humanus, 19 Acyrthosiphon_pisum, 20 Apis_mellifera, 21 Tribolium_castaneum, 22 Bombyx_mori, 23 Anopheles_gambiae, 24 Aedes_aegypti, 25 Drosophila_virilis, 26 Drosophila_mojavensis, 27 Drosophila_grimshawi, 28 Drosophila_willistoni, 29 Drosophila_pseudoobscura, 30 Drosophila_persimilis, 31 Drosophila_yakuba, 32 Drosophila_erecta, 33 Drosophila_simulans, 34 Drosophila_sechellia, 35 Drosophila_melanogaster, 36 Drosophila_ananassae, 37 Biomphalaria_glabrata, 38 Aplysia_californica, 39 Lottia_gigantea, 40 Euprymna_scolopes, 41 Spisula_solidissima, 42 Cerebratulus_lacteus, 43 Capitella_capitata, 44 Helobdella_robusta, 45 Strongylocentrotus_purpuratus, 46 Branchiostoma_floridae, 47 Ciona_intestinalis, 48 Oikopleura_dioica, 49 Petromyzon_marinus, 50 Callorhinchus_milii, 51 Tetraodon_nigroviridis, 52 Takifugu_rubripes, 53 Oryzias_latipes, 54 Gasterosteus_aculeatus, 55 Danio_rerio, 56 Xenopus_tropicalis, 57 Anolis_carolinensis, 58 Taeniopygia_guttata, 59 Gallus_gallus, 60 Ornithorhynchus_anatinus, 61 Dasypus_novemcinctus, 62 Loxodonta_africana, 63 Homo_sapiens, 64 Pan_troglodytes, 65 Pongo_pygmaeus, 66 Macaca_mulatta, 67 Microcebus_murinus, 68 Oryctolagus_cuniculus, 69 Cavia_porcellus, 70 Mus_musculus, 71 Rattus_norvegicus, 72 Erinaceus_europaeus, 73 Sorex_araneus, 74 Felis_catus, 75 Canis_familiaris, 76 Equus_caballus, 77 Sus_scrofa, 78 Bos_taurus; TREE MetazoanTree = (1,((((46,(((((56,(((58,59),57),(60,(61,(62,((((77,78),(76,(74,75))),(73,72)),((((71,70),69),68),(67,(66,(65,(63,64))))))))))),(55,((53,54),(51,52)))),50),49),(48,47))),45),((((44,43),42),(41,(40,(39,38,37)))),((((((((((((30,29),(36,(((33,34),35),(31,32)))),28),(27,(25,26))),(24,23)),22),21),20),(18,19)),17),16),(((((((15,14),13),12),(10,11)),(8,9)),7),(6,5,4))))),(3,2)))root; Extended; END; BEGIN MacClade; Version 4.0 87; LastModified -940863556; FileSettings '0' '0' '1' '1'; Singles 010; Editor 00011001111111100100010010 '0' '100' Geneva '9' '134' '1' all; EditorPosition '-1020' '-107' '899' '1281'; TreeWindowPosition '46' '6' '831' '1390'; ListWindow Characters open Geneva '9' '50' '10' '129' '345' 000; ListWindow Taxa closed Geneva '9' '50' '10' '225' '317' 100000000; ListWindow Trees closed Geneva '9' '50' '25' '129' '379'; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ListWindow ExSets closed Geneva '9' 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'2' '1' '3' 1010; BothTools '1'; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = Linear: 1 - 5, Squared: 6 - 7; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 6; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1274994638815; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8299827902228011876; tell It; setDefaultOrder 0 41 42 39 40 71 32 36 76 34 35 33 75 37 38 6 26 24 25 23 22 21 19 20 7 8 9 10 11 12 13 14 15 16 17 18 28 29 27 74 72 70 30 31 5 3 4 77 73 66 68 2 65 69 67 62 60 55 51 64 50 54 1 49 47 52 57 59 45 43 46 44 61 63 53 58 56 48; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5935335925532237653; tell It; setDefaultOrder 0 1 2 5 3 4 6; attachments ; endTell; checksumv 0 2 2559330103 null numChars 7 numItems 1 min 0.045 max 6.427908245 sumSquares 2145.74233352037 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 113; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1674 914; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8299827902228011876 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8299827902228011876; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1561 847; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1561 847; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.arrow; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8299827902228011876 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 918.1271320261407.425811185608900571; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1561 847; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((((((((((((((((((((63,64),65),66),67),(((71,70),69),68)),((((74,75),76),(77,78)),(73,72))),62),61),60),((58,59),57)),56),(((51,52),(53,54)),55)),50),49),(48,47)),46),45),(((((((((((((30,29),(36,(((33,34),35),(31,32)))),28),(27,(25,26))),(24,23)),22),21),20),(18,19)),17),16),((((((15,14),13),12),(10,11)),(8,9)),7)),(((44,43),(42,(41,((39,40),(38,37))))),((5,6),4)))),(3,2)),1)root;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; newAssistant #mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory; tell It; suspend ; setDisplayMode #mesquite.ancstates.ShadeStatesOnTree.ShadeStatesOnTree; tell It; toggleLabels off; toggleGray off; endTell; setHistorySource #mesquite.ancstates.RecAncestralStates.RecAncestralStates; tell It; getCharacterSource #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed; tell It; setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters; tell It; setDataSet #5935335925532237653; endTell; endTell; setMethod #mesquite.parsimony.ParsAncestralStates.ParsAncestralStates; tell It; setModelSource #mesquite.parsimony.CurrentParsModels.CurrentParsModels; toggleMPRsMode off; getEmployee #mesquite.parsimony.ParsimonySquared.ParsimonySquared; tell It; toggleWeight on; endTell; endTell; endTell; setCharacter 3; setMapping 1; toggleShowLegend on; toggleGray off; toggleWeights on; setInitialOffsetX 1331; setInitialOffsetY -413; setLegendWidth 142; setLegendHeight 304; resume ; endTell; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5935335925532237653 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1561 847; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize on; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; getInfoPanel; tell It; btspOpen true; apOpen true; fpOpen true; endTell; toggleInfoPanel on; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel on; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.Wand.Wand; tell It; toggleWholeMatrix off; toggleContiguous on; endTell; getEmployee #mesquite.cont.ItemsEditorForInfoPanel.ItemsEditorForInfoPanel; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #5935335925532237653 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1561 847; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; showPage 4; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;