Alignments and structures used to assess the function of RNAalifold


Datasets used for assessing predictive power or the new RNAalifold. If the reference structure is a prediction, information of what program was used is included. If only a name is given, information of how prediction was done is not available. CM, KN and ST denote presence of structure/alignment pair also in CM_finder, KNetFold or RNA STRAND dataset, respectively. pk means that the reference structure contains a pseudo-knot.

CMfinder dataset

KNetFold dataset

RNA STRAND-Rfam dataset

  • 7SK
  • bicoid_3
  • Corona_pk3 pk
  • CPEB3_ribozyme pk
  • Gammaretro_CES
  • Hammerhead_1 KN
  • Hammerhead_3 KN
  • HDV_ribozyme CM, pk
  • IRES_c-myc
  • R2_retro_el
  • RNAIII
  • RNase_MRP pk
  • rne5
  • RydC pk
  • s2m CM KN
  • Telomerase-cil
  • Telomerase-vert pk
  • Vimentin3
  • Y