Overview on processed synteny regions for TP53_ENSG00000141510_1e5.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=130001300094351.88315.75Homo_sapiens17 7513655 7520637 8 98.2% 89.3% -1 716.2 within_species_paralog: TP53
2region2, score=1124611246403.7629.91108.28Macaca_mulatta16 7400622 7407231 6 88.3% 85.3% -1 597.8 ortholog_one2one: P53_MACMU
3region3, score=1083810838183.6423.2869.26Canis_familiaris5 35557711 35560427 5 81.9% 69.6% -1 463.6 ortholog_one2one: P53_CANFA
4region4, score=8000800057730.64138.8Homo_sapiens17
5region5, score=130213022.030.030.28Gasterosteus_aculeatuscontig_7265
6region6, score=112311233.871.210.84Gasterosteus_aculeatuscontig_2922
7region7, score=10151015100.11Canis_familiaris9
8region8, score=10141014100.11Macaca_mulatta10
9region9, score=10091009100.11Gallus_gallus9
10region10, score=993993100.11Homo_sapiensX
11region11, score=9789780.5-0.680.06Homo_sapiensY
12region12, score=9409400.2-1.60.02Homo_sapiens13
13region13, score=9119110.13-2.030.01Homo_sapiens13
14region14, score=9109100.13-2.030.01Canis_familiaris15
15region15, score=8498490.07-2.650.01Gasterosteus_aculeatuscontig_5451
16region16, score=8378370.06-2.80.01Macaca_mulatta9
17region17, score=8178171.9-0.10.35Gallus_gallus9
18region18, score=8128120.06-2.80.01Homo_sapiens10
19region19, score=7107100.04-3.210Homo_sapiens13
20region20, score=6906900.03-3.50Macaca_mulatta11
21region21, score=6906902.20.180.77Gasterosteus_aculeatuscontig_5454
22region22, score=6236230.03-3.50Macaca_mulatta3
23region23, score=5885880.02-3.90Homo_sapiensX
24region24, score=5765761.87-0.120.78Gasterosteus_aculeatuscontig_395
25region25, score=5695690.02-3.90Macaca_mulatta7
26region26, score=5485480.02-3.90Gallus_gallus3
27region27, score=4874870.02-3.90Macaca_mulatta17
28region28, score=4604600.02-3.90Canis_familiaris1
29region29, score=4274270.82-0.190.16Homo_sapiens12
30region30, score=3963960.78-0.240.16Gallus_gallus4
31region31, score=3843840.02-3.90Canis_familiaris17
32region32, score=3643640.02-3.90Canis_familiaris20
33region33, score=3593590.02-3.90Canis_familiaris3
34region34, score=3443441.430.360.72Gasterosteus_aculeatuscontig_7234
35region35, score=3423420.02-3.90Macaca_mulatta9
36region36, score=3023020.94-0.050.16Gallus_gallus4
37region37, score=2882880.92-0.070.15Gallus_gallus3
38region38, score=2872870.01-4.60Canis_familiaris10
39region39, score=2852850.01-4.60Macaca_mulattaX
40region40, score=2782780.83-0.180.28Gasterosteus_aculeatuscontig_7228
41region41, score=2522520.01-4.60Canis_familiaris16
42region42, score=2482480.01-4.60Canis_familiarisX
43region43, score=2452450.01-4.60Macaca_mulattaX
44region44, score=2442440.8-0.210.27Gallus_gallus4
45region45, score=2252250.78-0.240.26Gallus_gallus1
46region46, score=2252250.94-0.050.47Gasterosteus_aculeatuscontig_6895
47region47, score=2092090.01-4.60Gasterosteus_aculeatuscontig_286
48region48, score=2092090.01-4.60Gasterosteus_aculeatuscontig_10078
49region49, score=200200101Gallus_gallus21 917987 918954 2 26.5% 63.5% -1 143.7 between_species_paralog: 419382

Data table for reference protein loci

QueryProtein(s)=ENSP00000269305 (contained in p9)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 EIF4A1 ENSP00000369881 ENST00000380512 ENSG00000161960 IF4A1_HUMAN 17 7416884 7422528 7421190 1 11 406 757.3
p2 CD68 ENSP00000250092 ENST00000250092 ENSG00000129226 CD68_HUMAN 17 7423720 7425553 7424331 1 6 354 317.9
p3 MPDU1 ENSP00000352876 ENST00000359822 ENSG00000129255 MPU1_HUMAN 17 7427905 7431593 7430798 1 7 247 423.9
p4 SOX15 ENSP00000355354 ENST00000250055 ENSG00000129194 SOX15_HUMAN 17 7432420 7433718 7433362 -1 2 233 357.4
p5 FXR2 ENSP00000250113 ENST00000250113 ENSG00000129245 FXR2_HUMAN 17 7435798 7458575 7438015 -1 17 698 1157
p6 SAT2 ENSP00000369833 ENST00000380466 ENSG00000141504 Q502X4_HUMAN 17 7470490 7471898 7471244 -1 6 249 421.7
p7 SHBG ENSP00000369816 ENST00000380450 ENSG00000129214 SHBG_HUMAN 17 7474216 7477395 7475677 1 8 402 730.3
p8 ATP1B2 ENSP00000250111 ENST00000250111 ENSG00000129244 AT1B2_HUMAN 17 7495562 7499938 7498181 1 7 290 593.5
p9 TP53 ENSP00000269305 ENST00000269305 ENSG00000141510 P53_HUMAN 17 7513652 7520637 7518977 -1 10 393 716.2
p10 WDR79 ENSP00000324203 ENST00000316024 ENSG00000141499 WDR79_HUMAN 17 7532692 7547529 7545590 1 10 548 970.9
p11 EFNB3 ENSP00000369794 ENST00000380429 ENSG00000108947 EFNB3_HUMAN 17 7549642 7553619 7552570 1 5 340 474.1
p12 DNAH2 ENSP00000082259 ENST00000082259 ENSG00000183914 Q6PIH3_HUMAN 17 7563778 7587654 7582141 1 13 872 1651.8
p13 DNAH2 ENSP00000340658 ENST00000339675 ENSG00000183914 NM_020877.2 17 7622330 7623450 7622501 1 2 116 249
total length of ref-loci (on slice) = 206567 (21e4)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 1 (region 1 for Hsap)
region1, score=13000 region1, score=13000
syntenyRegion: Homo_sapiens.glob01.17.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 7418588:7623450 -f 15e4 some_geneID_to_be_selected
scoreRatio_sum=943 log_scoreRatio_sum=51.88 focal_scoreRatio_sum=315.75
AlnScore=13000 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 757.3 17 7418588 7422525 1 7 91.4% 83.6% 1353 0.01 / 0.01 = 1 within_species_paralog: EIF4A1 1
p2 q2 +/+ ENSP00000250092 CD68 q2 q2 317.9 17 7423803 7425110 1 3 86.2% 60.2% 1077 1 / 0.01 = 100 within_species_paralog: CD68 1
p3 q3 +/+ ENSP00000352876 MPDU1 q3 q3 423.9 17 7427905 7431590 1 6 90.3% 98.7% 687 1 / 0.01 = 100 within_species_paralog: MPDU1 1
p4 q4 +/+ ENSP00000355354 SOX15 q4 q4 357.4 17 7432423 7433718 -1 2 100% 100% 699 0.65 / 0.01 = 65 noComparaHits: SOX15 ;
MPDU1
1
p5 q5 +/+ ENSP00000250113 FXR2 q5 q5 1157 17 7435801 7449792 -1 15 94.1% 94.2% 2085 0.47 / 0.01 = 47 within_species_paralog: FXR2 1
p6 q6 +/+ ENSP00000369833 SAT2 q6 q6 421.7 17 7470493 7471898 -1 4 100% 72.7% 1044 1 / 0.01 = 100 within_species_paralog: SAT2 1
p7 q7 +/+ ENSP00000369816 SHBG q7 q7 730.3 17 7474216 7477392 1 7 100% 84.3% 1422 0.92 / 0.01 = 92 within_species_paralog: SHBG 1
p8 q8 +/+ ENSP00000250111 ATP1B2 q8 q8 593.5 17 7495562 7499935 1 5 93.8% 87.5% 936 0.72 / 0.01 = 72 within_species_paralog: ATP1B2 1
p9 q9 +/+ ENSP00000269305 TP53 q9 q9 716.2 17 7513655 7520637 -1 8 98.2% 89.3% 1263 0.79 / 0.01 = 79 within_species_paralog: TP53 1
p10 q10 +/+ ENSP00000324203 WDR79 q10 q10 970.9 17 7532692 7547526 1 9 98.4% 82.3% 1959 0.93 / 0.01 = 93 noComparaHits: WDR79 1
p11 q11 +/+ ENSP00000369794 EFNB3 q11 q11 474.1 17 7551999 7553616 1 4 88.2% 90.6% 1023 0.6 / 0.01 = 60 within_species_paralog: EFNB3 1
p12 q12 +/+ ENSP00000082259 DNAH2 q12 q12 1651.8 17 7563778 7587426 1 12 90.3% 93.8% 2508 0.93 / 0.01 = 93 within_species_paralog: DNAH2 1
p13 q13 +/+ ENSP00000340658 DNAH2 q13 q13 249 17 7622330 7623450 1 2 100% 100% 351 0.41 / 0.01 = 41 within_species_paralog: DNAH2 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 2 (region 1 for Mmul)
region2, score=11246 region2, score=11246
syntenyRegion: Macaca_mulatta.glob01.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 16 -i 7300575:7518630 -f 16e4 some_geneID_to_be_selected
scoreRatio_sum=403.76 log_scoreRatio_sum=29.91 focal_scoreRatio_sum=108.28
AlnScore=11246 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 745.3 16 7300575 7305285 1 7 94.1% 85.6% 1356 0.01 / 0.01 = 1 ortholog_one2one: EIF4A1 3
p2 q2 +/+ ENSP00000250092 CD68 q2 q2 407 16 7306609 7307874 1 3 84.2% 75.7% 1023 1 / 0.01 = 100 ortholog_one2one: CD68 1
p3 q3 +/+ ENSP00000352876 MPDU1 q3 q3 429 16 7310601 7314295 1 6 91.5% 97.8% 690 1 / 0.01 = 100 ortholog_one2one: MPDU1 1
p4 --- gapq ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 q4 +/+ ENSP00000250113 FXR2 q4 q4 1061 16 7318850 7334765 -1 14 85.8% 93.9% 1881 0.47 / 0.08 = 5.88 ortholog_one2one: FXR2 1
p6 q5 +/+ ENSP00000369833 SAT2 q5 q5 339.6 16 7355830 7357124 -1 4 69.5% 90.9% 528 1 / 0.19 = 5.26 ortholog_one2one: SAT2 1
p7 q6 +/+ ENSP00000369816 SHBG q6 q6 726.6 16 7361379 7364563 1 7 100% 78.1% 1416 0.92 / 0.01 = 92 ortholog_one2one: SHBG 1
p8 q7 +/+ ENSP00000250111 ATP1B2 q7 q7 591.6 16 7380276 7384784 1 5 93.8% 86.4% 948 0.72 / 0.01 = 72 ortholog_one2one: ATP1B2 1
p9 q8 +/+ ENSP00000269305 TP53 q8 q8 597.8 16 7400622 7407231 -1 6 88.3% 85.3% 1146 0.79 / 0.16 = 4.94 ortholog_one2one: P53_MACMU 1
p10 q9 +/+ ENSP00000324203 WDR79 q9 q9 809.5 16 7419140 7438475 1 7 84.3% 83.6% 1611 0.93 / 0.16 = 5.81 ortholog_one2one: WDR79 1
p11 q10 +/+ ENSP00000369794 EFNB3 q10 q10 424.2 16 7442830 7444626 1 4 71.8% 88.1% 783 0.6 / 0.1 = 6 ortholog_one2one: EFNB3 1
p12 q11 +/+ ENSP00000082259 DNAH2 q11 q11 1269.4 16 7463306 7481504 1 9 71.1% 89.9% 1989 0.93 / 0.23 = 4.04 ortholog_one2one: DNAH2 1
p13 q12 +/+ ENSP00000340658 DNAH2 q12 q12 232 16 7517536 7518630 1 2 100% 97.4% 351 0.41 / 0.06 = 6.83 ortholog_one2one: DNAH2 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 3 (region 1 for Cfam)
region3, score=10838 region3, score=10838
syntenyRegion: Canis_familiaris.glob01.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 5 -i 35491813:35642301 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=183.64 log_scoreRatio_sum=23.28 focal_scoreRatio_sum=69.26
AlnScore=10838 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 780.6 5 35491813 35495903 1 9 91.9% 95.7% 1182 0.01 / 0.01 = 1 ortholog_one2many: 612030 1
p2 q2 +/+ ENSP00000250092 CD68 q2 q2 286.5 5 35497160 35498735 1 4 96.3% 49.9% 1098 1 / 0.09 = 11.11 ortholog_one2one: 489476 1
p3 q3 +/+ ENSP00000352876 MPDU1 q3 q3 347.9 5 35500314 35502889 1 5 83% 82.2% 639 1 / 0.17 = 5.88 ortholog_one2one: 489477 1
p4 q4 +/+ ENSP00000355354 SOX15 q4 q4 281.7 5 35503686 35504942 -1 2 100% 84.5% 699 0.65 / 0.21 = 3.1 ortholog_one2one: SOX15 1
p5 q5 +/+ ENSP00000250113 FXR2 q5 q5 1072.6 5 35506970 35514511 -1 13 92.4% 81% 2241 0.47 / 0.07 = 6.71 apparent_ortholog_one2one: 489478 1
p6 q6 +/+ ENSP00000369833 SAT2 q6 q6 218.7 5 35530096 35531048 -1 3 47.4% 76.7% 387 1 / 0.48 = 2.08 ortholog_one2one: 479486 1
p7 q7 +/+ ENSP00000369816 SHBG q7 q7 538.9 5 35533275 35536202 1 6 83.3% 77.7% 1065 0.92 / 0.26 = 3.54 ortholog_one2one: 479487 1
p8 q8 +/+ ENSP00000250111 ATP1B2 q8 q8 584.9 5 35544767 35549006 1 5 93.8% 85% 960 0.72 / 0.01 = 72 ortholog_one2one: 489479 1
p9 q9 +/+ ENSP00000269305 TP53 q9 q9 463.6 5 35557711 35560427 -1 5 81.9% 69.6% 1056 0.79 / 0.35 = 2.26 ortholog_one2one: P53_CANFA 1
p10 q10 +/+ ENSP00000324203 WDR79 q10 q10 810.7 5 35570956 35581731 1 9 94.9% 73.5% 1737 0.93 / 0.16 = 5.81 ortholog_one2one: 607892 1
p11 q11 +/+ ENSP00000369794 EFNB3 q11 q11 472.6 5 35586333 35587976 1 4 86.5% 89.1% 909 0.6 / 0.01 = 60 noComparaHits: 1
p12 q12 +/+ ENSP00000082259 DNAH2 q12 q12 1182.8 5 35602028 35615929 1 10 70.1% 86.3% 1884 0.93 / 0.28 = 3.32 ortholog_one2one: DNAH2 1
p13 q13 +/+ ENSP00000340658 DNAH2 q13 q13 234 5 35641437 35642301 1 2 100% 94% 351 0.41 / 0.06 = 6.83 ortholog_one2one: DNAH2 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 4 (region 2 for Hsap)
region4, score=8000 region4, score=8000
syntenyRegion: Homo_sapiens.glob02.17.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 7139684:7499935 -f 27e4 some_geneID_to_be_selected
scoreRatio_sum=577 log_scoreRatio_sum=30.64 focal_scoreRatio_sum=138.8
AlnScore=8000 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 757.3 17 7418588 7422525 1 7 91.4% 83.6% 1353 0.01 / 0.01 = 1 within_species_paralog: EIF4A1 1
p2 q2 +/+ ENSP00000250092 CD68 q2 q2 317.9 17 7423803 7425110 1 3 86.2% 60.2% 1077 1 / 0.01 = 100 within_species_paralog: CD68 1
p3 q3 +/+ ENSP00000352876 MPDU1 q3 q3 423.9 17 7427905 7431590 1 6 90.3% 98.7% 687 1 / 0.01 = 100 within_species_paralog: MPDU1 1
p4 q4 +/+ ENSP00000355354 SOX15 q4 q4 357.4 17 7432423 7433718 -1 2 100% 100% 699 0.65 / 0.01 = 65 noComparaHits: SOX15 ;
MPDU1
1
p5 q5 +/+ ENSP00000250113 FXR2 q5 q5 1157 17 7435801 7449792 -1 15 94.1% 94.2% 2085 0.47 / 0.01 = 47 within_species_paralog: FXR2 1
p6 q6 +/+ ENSP00000369833 SAT2 q6 q6 421.7 17 7470493 7471898 -1 4 100% 72.7% 1044 1 / 0.01 = 100 within_species_paralog: SAT2 1
p7 q7 +/+ ENSP00000369816 SHBG q7 q7 730.3 17 7474216 7477392 1 7 100% 84.3% 1422 0.92 / 0.01 = 92 within_species_paralog: SHBG 1
p8 q8 +/+ ENSP00000250111 ATP1B2 q8 q8 593.5 17 7495562 7499935 1 5 93.8% 87.5% 936 0.72 / 0.01 = 72 within_species_paralog: ATP1B2 1
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 5 (region 1 for Gacu)
region5, score=1302 region5, score=1302
syntenyRegion: Gasterosteus_aculeatus.glob01.contig_7265.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7265 -i 43378:57925 -f 11e3 some_geneID_to_be_selected
scoreRatio_sum=2.03 log_scoreRatio_sum=0.03 focal_scoreRatio_sum=0.28
AlnScore=1302 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 744.3 contig_7265 43378 47219 1 9 92.1% 88.4% 1167 0.01 / 0.01 = 1 noComparaHits: ENSGACG00000020072 1
p2 --- gapq ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 q2 /+ ENSP00000355354 SOX15 q2 q2 129 contig_7265 57569 57925 1 1 51.1% 58% 357 0.65 / 0.63 = 1.03 noComparaHits: ENSGACG00000020077 1
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 6 (region 2 for Gacu)
region6, score=1123 region6, score=1123
syntenyRegion: Gasterosteus_aculeatus.glob03.contig_2922.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2922 -i 146189:167106 -f 16e3 some_geneID_to_be_selected
scoreRatio_sum=3.87 log_scoreRatio_sum=1.21 focal_scoreRatio_sum=0.84
AlnScore=1123 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 q1 +/+ ENSP00000082259 DNAH2 q1 q1 473.7 contig_2922 158590 167106 -1 7 51.6% 49.2% 1365 0.93 / 0.71 = 1.31 noComparaHits: ENSGACG00000012383 1
p13 q2 +/+ ENSP00000340658 DNAH2 q2 q2 208.5 contig_2922 146189 147502 -1 2 100% 85.8% 360 0.41 / 0.16 = 2.56 noComparaHits: ENSGACG00000012383 1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 7 (region 2 for Cfam)
region7, score=1015 region7, score=1015
syntenyRegion: Canis_familiaris.glob02.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 9 -i 27575873:27577069 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=1015 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 769 9 27575873 27577069 1 1 98.3% 100% 1197 0.01 / 0.01 = 1 noComparaHits: 612030 2
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 8 (region 2 for Mmul)
region8, score=1014 region8, score=1014
syntenyRegion: Macaca_mulatta.glob02.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 10 -i 49521525:49522742 -f 91e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=1014 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 768 10 49521525 49522742 -1 1 100% 99.3% 1218 0.01 / 0.01 = 1 between_species_paralog: ENSMMUG00000007545 1
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 9 (region 1 for Ggal)
region9, score=1009 region9, score=1009
syntenyRegion: Gallus_gallus.glob03.9.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 9 -i 17296165:17301508 -f 40e2 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=1009 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 764.5 9 17296165 17301508 1 9 95.3% 84.3% 1278 0.01 / 0.01 = 1 ortholog_one2many: IF4A2_CHICK 1
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 10 (region 3 for Hsap)
region10, score=993 region10, score=993
syntenyRegion: Homo_sapiens.glob03.X.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l X -i 91254920:91256116 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=993 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 752 X 91254920 91256116 -1 1 98.3% 95.5% 1197 0.01 / 0.01 = 1 noComparaHits: PCDH11X 2
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 11 (region 4 for Hsap)
region11, score=978 region11, score=978
syntenyRegion: Homo_sapiens.glob04.Y.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l Y -i 5265809:5267005 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=0.5 log_scoreRatio_sum=-0.68 focal_scoreRatio_sum=0.06
AlnScore=978 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 741 Y 5265809 5267005 -1 1 98.3% 93.7% 1197 0.01 / 0.02 = 0.5 within_species_paralog: ENSG00000173394 4
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 12 (region 5 for Hsap)
region12, score=940 region12, score=940
syntenyRegion: Homo_sapiens.glob05.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 28070975:28072186 -f 91e1 some_geneID_to_be_selected
scoreRatio_sum=0.2 log_scoreRatio_sum=-1.6 focal_scoreRatio_sum=0.02
AlnScore=940 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 712 13 28070975 28072186 1 1 99.5% 88.9% 1212 0.01 / 0.05 = 0.2 noComparaHits: 5
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 13 (region 6 for Hsap)
region13, score=911 region13, score=911
syntenyRegion: Homo_sapiens.glob09.13.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 36410458:36411663 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=0.13 log_scoreRatio_sum=-2.03 focal_scoreRatio_sum=0.01
AlnScore=911 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 690 13 36410458 36411663 -1 3 98.8% 87% 1200 0.01 / 0.08 = 0.13 noComparaHits: 6
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 14 (region 3 for Cfam)
region14, score=910 region14, score=910
syntenyRegion: Canis_familiaris.glob03.15.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 15 -i 39512119:39513329 -f 91e1 some_geneID_to_be_selected
scoreRatio_sum=0.13 log_scoreRatio_sum=-2.03 focal_scoreRatio_sum=0.01
AlnScore=910 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 689.3 15 39512119 39513329 1 2 99.8% 84.7% 1209 0.01 / 0.08 = 0.13 noComparaHits: 4
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 15 (region 3 for Gacu)
region15, score=849 region15, score=849
syntenyRegion: Gasterosteus_aculeatus.glob05.contig_5451.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5451 -i 8271:11215 -f 22e2 some_geneID_to_be_selected
scoreRatio_sum=0.07 log_scoreRatio_sum=-2.65 focal_scoreRatio_sum=0.01
AlnScore=849 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 643.7 contig_5451 8271 11215 -1 6 88.2% 71.8% 1335 0.01 / 0.15 = 0.07 noComparaHits: ENSGACG00000016054 2
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 16 (region 3 for Mmul)
region16, score=837 region16, score=837
syntenyRegion: Macaca_mulatta.glob04.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 9 -i 91623426:91624941 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.06 log_scoreRatio_sum=-2.8 focal_scoreRatio_sum=0.01
AlnScore=837 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 634.1 9 91623426 91624941 1 4 92.1% 82.1% 1134 0.01 / 0.16 = 0.06 noComparaHits: CPEB3 4
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 17 (region 2 for Ggal)
region17, score=817 region17, score=817
syntenyRegion: Gallus_gallus.glob01.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 9 -i 17990822:18256134 -f 20e4 some_geneID_to_be_selected
scoreRatio_sum=1.9 log_scoreRatio_sum=-0.1 focal_scoreRatio_sum=0.35
AlnScore=817 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000355354 SOX15 q1 q1 123 9 17990822 17991145 -1 1 48.5% 60.2% 324 0.65 / 0.65 = 1 noComparaHits: SOX2_CHICK 1
p5 q2 +/+ ENSP00000250113 FXR2 q2 q2 548 9 18243070 18256134 -1 8 53.4% 68.8% 1194 0.47 / 0.52 = 0.9 ortholog_one2many: Q5F3S6_CHICK 1
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 18 (region 7 for Hsap)
region18, score=812 region18, score=812
syntenyRegion: Homo_sapiens.glob08.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 10 -i 93886614:93888106 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.06 log_scoreRatio_sum=-2.8 focal_scoreRatio_sum=0.01
AlnScore=812 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 615.3 10 93886614 93888106 1 4 89.4% 83.7% 1077 0.01 / 0.18 = 0.06 noComparaHits: CPEB3 7
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 19 (region 8 for Hsap)
region19, score=710 region19, score=710
syntenyRegion: Homo_sapiens.glob06.13.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 60109024:60110232 -f 91e1 some_geneID_to_be_selected
scoreRatio_sum=0.04 log_scoreRatio_sum=-3.21 focal_scoreRatio_sum=0
AlnScore=710 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 538 13 60109024 60110232 -1 1 100% 71.3% 1209 0.01 / 0.28 = 0.04 noComparaHits: 9
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 20 (region 4 for Mmul)
region20, score=690 region20, score=690
syntenyRegion: Macaca_mulatta.glob06.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 11 -i 26600617:26601745 -f 85e1 some_geneID_to_be_selected
scoreRatio_sum=0.03 log_scoreRatio_sum=-3.5 focal_scoreRatio_sum=0
AlnScore=690 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 523 11 26600617 26601745 -1 2 92.9% 66.8% 1128 0.01 / 0.3 = 0.03 noComparaHits: ENSMMUG00000007050 5
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 21 (region 4 for Gacu)
region21, score=690 region21, score=690
syntenyRegion: Gasterosteus_aculeatus.glob04.contig_5454.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5454 -i 626:55197 -f 41e3 some_geneID_to_be_selected
scoreRatio_sum=2.2 log_scoreRatio_sum=0.18 focal_scoreRatio_sum=0.77
AlnScore=690 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000355354 SOX15 q1 q1 122 contig_5454 54952 55197 1 1 35.2% 74.4% 246 0.65 / 0.65 = 1 noComparaHits: ENSGACG00000015720 4
p5 --- gapq ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 q2 /+ ENSP00000250111 ATP1B2 q2 q2 234.2 contig_5454 626 2672 1 4 75.5% 44.4% 807 0.72 / 0.6 = 1.2 noComparaHits: 3
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 22 (region 5 for Mmul)
region22, score=623 region22, score=623
syntenyRegion: Macaca_mulatta.glob07.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 19274115:19275039 -f 69e1 some_geneID_to_be_selected
scoreRatio_sum=0.03 log_scoreRatio_sum=-3.5 focal_scoreRatio_sum=0
AlnScore=623 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 472 3 19274115 19275039 1 2 75.9% 77.6% 924 0.01 / 0.37 = 0.03 noComparaHits: 6
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 23 (region 9 for Hsap)
region23, score=588 region23, score=588
syntenyRegion: Homo_sapiens.glob07.X.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l X -i 52878477:52879674 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=588 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 446 X 52878841 52879674 -1 1 69.5% 79.5% 834 0.01 / 0.41 = 0.02 noComparaHits: noData
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 24 (region 5 for Gacu)
region24, score=576 region24, score=576
syntenyRegion: Gasterosteus_aculeatus.glob02.contig_395.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_395 -i 159149:281161 -f 92e3 some_geneID_to_be_selected
scoreRatio_sum=1.87 log_scoreRatio_sum=-0.12 focal_scoreRatio_sum=0.78
AlnScore=576 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 q1 +/+ ENSP00000250111 ATP1B2 q1 q1 141.3 contig_395 242803 243448 -1 3 53.1% 42.6% 483 0.72 / 0.76 = 0.95 noComparaHits: ENSGACG00000015325 4
p9 --- gapq ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 q2 +/+ ENSP00000369794 EFNB3 q2 q2 162.4 contig_395 159149 163815 -1 2 41.2% 53.6% 411 0.6 / 0.65 = 0.92 noComparaHits: ENSGACG00000015366 1
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 25 (region 6 for Mmul)
region25, score=569 region25, score=569
syntenyRegion: Macaca_mulatta.glob03.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 7 -i 164954650:165295660 -f 26e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=569 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 431 7 164954650 164955774 1 1 83.3% 63.5% 1125 0.01 / 0.43 = 0.02 between_species_paralog: ENSMMUG00000019847 7
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 26 (region 3 for Ggal)
region26, score=548 region26, score=548
syntenyRegion: Gallus_gallus.glob05.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 3 -i 17373823:17380122 -f 47e2 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=548 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 415.4 3 17373823 17380122 1 6 66% 63.2% 936 0.01 / 0.45 = 0.02 between_species_paralog: Q5ZM36_CHICK 2
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 27 (region 7 for Mmul)
region27, score=487 region27, score=487
syntenyRegion: Macaca_mulatta.glob05.17.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 17 -i 8240171:8240910 -f 56e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=487 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 369 17 8240171 8240785 1 1 50.5% 93.2% 615 0.01 / 0.51 = 0.02 noComparaHits: 9
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 28 (region 4 for Cfam)
region28, score=460 region28, score=460
syntenyRegion: Canis_familiaris.glob05.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 1 -i 113951057:113960499 -f 71e2 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=460 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 349 1 113951458 113960499 -1 2 64.5% 68.9% 771 0.01 / 0.53 = 0.02 noComparaHits: 6
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 29 (region 10 for Hsap)
region29, score=427 region29, score=427
syntenyRegion: Homo_sapiens.glob10.12.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 12 -i 41112065:41113426 -f 10e2 some_geneID_to_be_selected
scoreRatio_sum=0.82 log_scoreRatio_sum=-0.19 focal_scoreRatio_sum=0.16
AlnScore=427 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 q1 +/+ ENSP00000250113 FXR2 q1 q1 495 12 41112065 41113426 -1 3 67.8% 56.5% 1311 0.47 / 0.57 = 0.82 noComparaHits: PPHLN1 3
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 30 (region 4 for Ggal)
region30, score=396 region30, score=396
syntenyRegion: Gallus_gallus.glob08.4.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 18832580:18844370 -f 88e2 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.16
AlnScore=396 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 q1 +/+ ENSP00000250113 FXR2 q1 q1 458.9 4 18832580 18844370 -1 7 40.1% 67.3% 954 0.47 / 0.6 = 0.78 between_species_paralog: Q5ZHM3_CHICK 2
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 31 (region 5 for Cfam)
region31, score=384 region31, score=384
syntenyRegion: Canis_familiaris.glob08.17.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 17 -i 51510985:51512006 -f 77e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=384 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 290.9 17 51510985 51512006 -1 2 70.4% 58.8% 843 0.01 / 0.61 = 0.02 noComparaHits: 8
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 32 (region 6 for Cfam)
region32, score=364 region32, score=364
syntenyRegion: Canis_familiaris.glob06.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 20 -i 41662060:41663356 -f 97e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=364 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 276 20 41662244 41663356 1 2 74.9% 55.2% 894 0.01 / 0.63 = 0.02 noComparaHits: 476610 9
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 33 (region 7 for Cfam)
region33, score=359 region33, score=359
syntenyRegion: Canis_familiaris.glob04.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 3 -i 63014769:63015872 -f 83e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=359 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 272 3 63014769 63015872 1 1 91.4% 38.7% 1104 0.01 / 0.64 = 0.02 noComparaHits: ENSCAFG00000014560 10
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 34 (region 6 for Gacu)
region34, score=344 region34, score=344
syntenyRegion: Gasterosteus_aculeatus.glob09.contig_7234.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7234 -i 9034:13970 -f 37e2 some_geneID_to_be_selected
scoreRatio_sum=1.43 log_scoreRatio_sum=0.36 focal_scoreRatio_sum=0.72
AlnScore=344 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 q1 +/+ ENSP00000324203 WDR79 q1 q1 334.4 contig_7234 9034 13970 -1 4 45.4% 53.3% 951 0.93 / 0.65 = 1.43 noComparaHits: ENSGACG00000019923 ;
ENSGACG00000019924
1
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 35 (region 8 for Mmul)
region35, score=342 region35, score=342
syntenyRegion: Macaca_mulatta.glob09.9.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 9 -i 63747830:63749526 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=342 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 259 9 63747879 63749526 -1 2 45.8% 69.5% 558 0.01 / 0.65 = 0.02 noComparaHits: KIAA0974 noData
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 36 (region 5 for Ggal)
region36, score=302 region36, score=302
syntenyRegion: Gallus_gallus.glob06.4.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 10594884:10595111 -f 17e1 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.16
AlnScore=302 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000355354 SOX15 q1 q1 108 4 10594884 10595111 1 1 32.6% 78.9% 228 0.65 / 0.69 = 0.94 noComparaHits: CH03_CHICK 3
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 37 (region 6 for Ggal)
region37, score=288 region37, score=288
syntenyRegion: Gallus_gallus.glob09.3.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 3 -i 97427132:97427383 -f 19e1 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.15
AlnScore=288 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000355354 SOX15 q1 q1 103 3 97427132 97427383 1 1 36.1% 58.3% 252 0.65 / 0.71 = 0.92 noComparaHits: NP_990518.1 5
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 38 (region 8 for Cfam)
region38, score=287 region38, score=287
syntenyRegion: Canis_familiaris.glob07.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 10 -i 36516719:36517909 -f 89e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=287 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 218 10 36516719 36517300 -1 1 48.3% 61.2% 582 0.01 / 0.71 = 0.01 noComparaHits: noData
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 39 (region 9 for Mmul)
region39, score=285 region39, score=285
syntenyRegion: Macaca_mulatta.glob08.X.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l X -i 51177106:51178307 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=285 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 216 X 51177452 51177904 -1 1 37.4% 71.6% 453 0.01 / 0.71 = 0.01 noComparaHits: noData
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 40 (region 7 for Gacu)
region40, score=278 region40, score=278
syntenyRegion: Gasterosteus_aculeatus.glob10.contig_7228.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7228 -i 5271:5552 -f 21e1 some_geneID_to_be_selected
scoreRatio_sum=0.83 log_scoreRatio_sum=-0.18 focal_scoreRatio_sum=0.28
AlnScore=278 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000369794 EFNB3 q1 q1 132 contig_7228 5271 5552 -1 1 27.9% 66.7% 282 0.6 / 0.72 = 0.83 noComparaHits: 2
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 41 (region 9 for Cfam)
region41, score=252 region41, score=252
syntenyRegion: Canis_familiaris.glob09.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 16 -i 27739703:27740764 -f 80e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=252 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 191 16 27739703 27740764 1 1 86% 32.4% 1062 0.01 / 0.74 = 0.01 noComparaHits: ENSCAFG00000025254 ;
607579
noData
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 42 (region 10 for Cfam)
region42, score=248 region42, score=248
syntenyRegion: Canis_familiaris.glob10.X.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l X -i 18730671:18731699 -f 77e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=248 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 188 X 18730671 18731699 1 1 83.3% 33.3% 1029 0.01 / 0.75 = 0.01 noComparaHits: noData
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 43 (region 10 for Mmul)
region43, score=245 region43, score=245
syntenyRegion: Macaca_mulatta.glob10.X.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l X -i 20795562:20796596 -f 78e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=245 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 186 X 20795562 20796596 1 1 83.7% 32.3% 1035 0.01 / 0.75 = 0.01 noComparaHits: DDX53 noData
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 44 (region 7 for Ggal)
region44, score=244 region44, score=244
syntenyRegion: Gallus_gallus.glob02.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 1015346:1015633 -f 22e1 some_geneID_to_be_selected
scoreRatio_sum=0.8 log_scoreRatio_sum=-0.21 focal_scoreRatio_sum=0.27
AlnScore=244 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000369794 EFNB3 q1 q1 116 4 1015346 1015633 -1 1 29.7% 50.5% 288 0.6 / 0.75 = 0.8 between_species_paralog: EFNB1_CHICK 1
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 45 (region 8 for Ggal)
region45, score=225 region45, score=225
syntenyRegion: Gallus_gallus.glob07.1.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 145275148:145295053 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.26
AlnScore=225 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000369794 EFNB3 q1 q1 107 1 145275148 145275432 1 1 28.8% 49% 285 0.6 / 0.77 = 0.78 between_species_paralog: NP_990155.1 2
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 46 (region 8 for Gacu)
region46, score=225 region46, score=225
syntenyRegion: Gasterosteus_aculeatus.glob08.contig_6895.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_6895 -i 3782:50663 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.47
AlnScore=225 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 q1 +/+ ENSP00000250111 ATP1B2 q1 q1 133.6 contig_6895 49752 50663 -1 2 51.7% 39.3% 432 0.72 / 0.77 = 0.94 noComparaHits: ENSGACG00000015312 6
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 47 (region 9 for Gacu)
region47, score=209 region47, score=209
syntenyRegion: Gasterosteus_aculeatus.glob06.contig_286.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_286 -i 2880:4040 -f 87e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=209 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 159 contig_286 2880 4040 -1 1 87.4% 28.1% 1161 0.01 / 0.79 = 0.01 noComparaHits: ENSGACG00000016367 4
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 48 (region 10 for Gacu)
region48, score=209 region48, score=209
syntenyRegion: Gasterosteus_aculeatus.glob07.contig_10078.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_10078 -i 8927:9988 -f 80e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=209 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000369881 EIF4A1 q1 q1 159 contig_10078 8927 9988 -1 1 86% 29.2% 1062 0.01 / 0.79 = 0.01 noComparaHits: ENSGACG00000002948 4
p2 --- gape ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000269305 TP53 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13

region 49 (region 9 for Ggal)
region49, score=200 region49, score=200
syntenyRegion: Gallus_gallus.glob10.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 21 -i 917987:918954 -f 73e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=1
AlnScore=200 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000369881 EIF4A1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000250092 CD68 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000352876 MPDU1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000355354 SOX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000250113 FXR2 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000369833 SAT2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000369816 SHBG noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000250111 ATP1B2 noMatch --- - - - - - - - - - - - -
p9 q1 +/+ ENSP00000269305 TP53 q1 q1 143.7 21 917987 918954 -1 2 26.5% 63.5% 312 0.79 / 0.79 = 1 between_species_paralog: 419382 2
p10 --- gape ENSP00000324203 WDR79 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000369794 EFNB3 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000082259 DNAH2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000340658 DNAH2 noMatch --- - - - - - - - - - - - -