Overview on processed synteny regions for TP53_ENSG00000141510_1e5.protein.info
Rank | AlnOverview | AlnScore | RatioSum | logRatioSum | focalRatioSum | TargetGenome | chr | startPos | endPos | hitsCount | queryCov | meanIdentity | ori | score | compara |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 13000 | 943 | 51.88 | 315.75 | Homo_sapiens | 17 | 7513655 | 7520637 | 8 | 98.2% | 89.3% | -1 | 716.2 | within_species_paralog: TP53 | |
2 | 11246 | 403.76 | 29.91 | 108.28 | Macaca_mulatta | 16 | 7400622 | 7407231 | 6 | 88.3% | 85.3% | -1 | 597.8 | ortholog_one2one: P53_MACMU | |
3 | 10838 | 183.64 | 23.28 | 69.26 | Canis_familiaris | 5 | 35557711 | 35560427 | 5 | 81.9% | 69.6% | -1 | 463.6 | ortholog_one2one: P53_CANFA | |
4 | 8000 | 577 | 30.64 | 138.8 | Homo_sapiens | 17 | |||||||||
5 | 1302 | 2.03 | 0.03 | 0.28 | Gasterosteus_aculeatus | contig_7265 | |||||||||
6 | 1123 | 3.87 | 1.21 | 0.84 | Gasterosteus_aculeatus | contig_2922 | |||||||||
7 | 1015 | 1 | 0 | 0.11 | Canis_familiaris | 9 | |||||||||
8 | 1014 | 1 | 0 | 0.11 | Macaca_mulatta | 10 | |||||||||
9 | 1009 | 1 | 0 | 0.11 | Gallus_gallus | 9 | |||||||||
10 | 993 | 1 | 0 | 0.11 | Homo_sapiens | X | |||||||||
11 | 978 | 0.5 | -0.68 | 0.06 | Homo_sapiens | Y | |||||||||
12 | 940 | 0.2 | -1.6 | 0.02 | Homo_sapiens | 13 | |||||||||
13 | 911 | 0.13 | -2.03 | 0.01 | Homo_sapiens | 13 | |||||||||
14 | 910 | 0.13 | -2.03 | 0.01 | Canis_familiaris | 15 | |||||||||
15 | 849 | 0.07 | -2.65 | 0.01 | Gasterosteus_aculeatus | contig_5451 | |||||||||
16 | 837 | 0.06 | -2.8 | 0.01 | Macaca_mulatta | 9 | |||||||||
17 | 817 | 1.9 | -0.1 | 0.35 | Gallus_gallus | 9 | |||||||||
18 | 812 | 0.06 | -2.8 | 0.01 | Homo_sapiens | 10 | |||||||||
19 | 710 | 0.04 | -3.21 | 0 | Homo_sapiens | 13 | |||||||||
20 | 690 | 0.03 | -3.5 | 0 | Macaca_mulatta | 11 | |||||||||
21 | 690 | 2.2 | 0.18 | 0.77 | Gasterosteus_aculeatus | contig_5454 | |||||||||
22 | 623 | 0.03 | -3.5 | 0 | Macaca_mulatta | 3 | |||||||||
23 | 588 | 0.02 | -3.9 | 0 | Homo_sapiens | X | |||||||||
24 | 576 | 1.87 | -0.12 | 0.78 | Gasterosteus_aculeatus | contig_395 | |||||||||
25 | 569 | 0.02 | -3.9 | 0 | Macaca_mulatta | 7 | |||||||||
26 | 548 | 0.02 | -3.9 | 0 | Gallus_gallus | 3 | |||||||||
27 | 487 | 0.02 | -3.9 | 0 | Macaca_mulatta | 17 | |||||||||
28 | 460 | 0.02 | -3.9 | 0 | Canis_familiaris | 1 | |||||||||
29 | 427 | 0.82 | -0.19 | 0.16 | Homo_sapiens | 12 | |||||||||
30 | 396 | 0.78 | -0.24 | 0.16 | Gallus_gallus | 4 | |||||||||
31 | 384 | 0.02 | -3.9 | 0 | Canis_familiaris | 17 | |||||||||
32 | 364 | 0.02 | -3.9 | 0 | Canis_familiaris | 20 | |||||||||
33 | 359 | 0.02 | -3.9 | 0 | Canis_familiaris | 3 | |||||||||
34 | 344 | 1.43 | 0.36 | 0.72 | Gasterosteus_aculeatus | contig_7234 | |||||||||
35 | 342 | 0.02 | -3.9 | 0 | Macaca_mulatta | 9 | |||||||||
36 | 302 | 0.94 | -0.05 | 0.16 | Gallus_gallus | 4 | |||||||||
37 | 288 | 0.92 | -0.07 | 0.15 | Gallus_gallus | 3 | |||||||||
38 | 287 | 0.01 | -4.6 | 0 | Canis_familiaris | 10 | |||||||||
39 | 285 | 0.01 | -4.6 | 0 | Macaca_mulatta | X | |||||||||
40 | 278 | 0.83 | -0.18 | 0.28 | Gasterosteus_aculeatus | contig_7228 | |||||||||
41 | 252 | 0.01 | -4.6 | 0 | Canis_familiaris | 16 | |||||||||
42 | 248 | 0.01 | -4.6 | 0 | Canis_familiaris | X | |||||||||
43 | 245 | 0.01 | -4.6 | 0 | Macaca_mulatta | X | |||||||||
44 | 244 | 0.8 | -0.21 | 0.27 | Gallus_gallus | 4 | |||||||||
45 | 225 | 0.78 | -0.24 | 0.26 | Gallus_gallus | 1 | |||||||||
46 | 225 | 0.94 | -0.05 | 0.47 | Gasterosteus_aculeatus | contig_6895 | |||||||||
47 | 209 | 0.01 | -4.6 | 0 | Gasterosteus_aculeatus | contig_286 | |||||||||
48 | 209 | 0.01 | -4.6 | 0 | Gasterosteus_aculeatus | contig_10078 | |||||||||
49 | 200 | 1 | 0 | 1 | Gallus_gallus | 21 | 917987 | 918954 | 2 | 26.5% | 63.5% | -1 | 143.7 | between_species_paralog: 419382 |
Data table for reference protein loci
QueryProtein(s)=ENSP00000269305 (contained in p9)QueryGenome=Homo_sapiens
ref-loci | geneName | protID | transID | geneID | protName | chr | startPos | endPos | meanPos | ori | numExons | protLength | selfscore |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | EIF4A1 | ENSP00000369881 | ENST00000380512 | ENSG00000161960 | IF4A1_HUMAN | 17 | 7416884 | 7422528 | 7421190 | 1 | 11 | 406 | 757.3 |
p2 | CD68 | ENSP00000250092 | ENST00000250092 | ENSG00000129226 | CD68_HUMAN | 17 | 7423720 | 7425553 | 7424331 | 1 | 6 | 354 | 317.9 |
p3 | MPDU1 | ENSP00000352876 | ENST00000359822 | ENSG00000129255 | MPU1_HUMAN | 17 | 7427905 | 7431593 | 7430798 | 1 | 7 | 247 | 423.9 |
p4 | SOX15 | ENSP00000355354 | ENST00000250055 | ENSG00000129194 | SOX15_HUMAN | 17 | 7432420 | 7433718 | 7433362 | -1 | 2 | 233 | 357.4 |
p5 | FXR2 | ENSP00000250113 | ENST00000250113 | ENSG00000129245 | FXR2_HUMAN | 17 | 7435798 | 7458575 | 7438015 | -1 | 17 | 698 | 1157 |
p6 | SAT2 | ENSP00000369833 | ENST00000380466 | ENSG00000141504 | Q502X4_HUMAN | 17 | 7470490 | 7471898 | 7471244 | -1 | 6 | 249 | 421.7 |
p7 | SHBG | ENSP00000369816 | ENST00000380450 | ENSG00000129214 | SHBG_HUMAN | 17 | 7474216 | 7477395 | 7475677 | 1 | 8 | 402 | 730.3 |
p8 | ATP1B2 | ENSP00000250111 | ENST00000250111 | ENSG00000129244 | AT1B2_HUMAN | 17 | 7495562 | 7499938 | 7498181 | 1 | 7 | 290 | 593.5 |
p9 | TP53 | ENSP00000269305 | ENST00000269305 | ENSG00000141510 | P53_HUMAN | 17 | 7513652 | 7520637 | 7518977 | -1 | 10 | 393 | 716.2 |
p10 | WDR79 | ENSP00000324203 | ENST00000316024 | ENSG00000141499 | WDR79_HUMAN | 17 | 7532692 | 7547529 | 7545590 | 1 | 10 | 548 | 970.9 |
p11 | EFNB3 | ENSP00000369794 | ENST00000380429 | ENSG00000108947 | EFNB3_HUMAN | 17 | 7549642 | 7553619 | 7552570 | 1 | 5 | 340 | 474.1 |
p12 | DNAH2 | ENSP00000082259 | ENST00000082259 | ENSG00000183914 | Q6PIH3_HUMAN | 17 | 7563778 | 7587654 | 7582141 | 1 | 13 | 872 | 1651.8 |
p13 | DNAH2 | ENSP00000340658 | ENST00000339675 | ENSG00000183914 | NM_020877.2 | 17 | 7622330 | 7623450 | 7622501 | 1 | 2 | 116 | 249 |
Parameter used for the loci-alignments
qLoci-Score_CutOff: 100 bitsqLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
region 1 (region 1 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 7418588:7623450 -f 15e4 some_geneID_to_be_selected
scoreRatio_sum=943 log_scoreRatio_sum=51.88 focal_scoreRatio_sum=315.75
AlnScore=13000 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 757.3 | 17 | 7418588 | 7422525 | 1 | 7 | 91.4% | 83.6% | 1353 | 0.01 / 0.01 = 1 | within_species_paralog: EIF4A1 | 1 |
p2 | q2 | +/+ | ENSP00000250092 | CD68 | q2 | q2 | 317.9 | 17 | 7423803 | 7425110 | 1 | 3 | 86.2% | 60.2% | 1077 | 1 / 0.01 = 100 | within_species_paralog: CD68 | 1 |
p3 | q3 | +/+ | ENSP00000352876 | MPDU1 | q3 | q3 | 423.9 | 17 | 7427905 | 7431590 | 1 | 6 | 90.3% | 98.7% | 687 | 1 / 0.01 = 100 | within_species_paralog: MPDU1 | 1 |
p4 | q4 | +/+ | ENSP00000355354 | SOX15 | q4 | q4 | 357.4 | 17 | 7432423 | 7433718 | -1 | 2 | 100% | 100% | 699 | 0.65 / 0.01 = 65 | noComparaHits: SOX15
; MPDU1 |
1 |
p5 | q5 | +/+ | ENSP00000250113 | FXR2 | q5 | q5 | 1157 | 17 | 7435801 | 7449792 | -1 | 15 | 94.1% | 94.2% | 2085 | 0.47 / 0.01 = 47 | within_species_paralog: FXR2 | 1 |
p6 | q6 | +/+ | ENSP00000369833 | SAT2 | q6 | q6 | 421.7 | 17 | 7470493 | 7471898 | -1 | 4 | 100% | 72.7% | 1044 | 1 / 0.01 = 100 | within_species_paralog: SAT2 | 1 |
p7 | q7 | +/+ | ENSP00000369816 | SHBG | q7 | q7 | 730.3 | 17 | 7474216 | 7477392 | 1 | 7 | 100% | 84.3% | 1422 | 0.92 / 0.01 = 92 | within_species_paralog: SHBG | 1 |
p8 | q8 | +/+ | ENSP00000250111 | ATP1B2 | q8 | q8 | 593.5 | 17 | 7495562 | 7499935 | 1 | 5 | 93.8% | 87.5% | 936 | 0.72 / 0.01 = 72 | within_species_paralog: ATP1B2 | 1 |
p9 | q9 | +/+ | ENSP00000269305 | TP53 | q9 | q9 | 716.2 | 17 | 7513655 | 7520637 | -1 | 8 | 98.2% | 89.3% | 1263 | 0.79 / 0.01 = 79 | within_species_paralog: TP53 | 1 |
p10 | q10 | +/+ | ENSP00000324203 | WDR79 | q10 | q10 | 970.9 | 17 | 7532692 | 7547526 | 1 | 9 | 98.4% | 82.3% | 1959 | 0.93 / 0.01 = 93 | noComparaHits: WDR79 | 1 |
p11 | q11 | +/+ | ENSP00000369794 | EFNB3 | q11 | q11 | 474.1 | 17 | 7551999 | 7553616 | 1 | 4 | 88.2% | 90.6% | 1023 | 0.6 / 0.01 = 60 | within_species_paralog: EFNB3 | 1 |
p12 | q12 | +/+ | ENSP00000082259 | DNAH2 | q12 | q12 | 1651.8 | 17 | 7563778 | 7587426 | 1 | 12 | 90.3% | 93.8% | 2508 | 0.93 / 0.01 = 93 | within_species_paralog: DNAH2 | 1 |
p13 | q13 | +/+ | ENSP00000340658 | DNAH2 | q13 | q13 | 249 | 17 | 7622330 | 7623450 | 1 | 2 | 100% | 100% | 351 | 0.41 / 0.01 = 41 | within_species_paralog: DNAH2 | 1 |
region 2 (region 1 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 16 -i 7300575:7518630 -f 16e4 some_geneID_to_be_selected
scoreRatio_sum=403.76 log_scoreRatio_sum=29.91 focal_scoreRatio_sum=108.28
AlnScore=11246 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 745.3 | 16 | 7300575 | 7305285 | 1 | 7 | 94.1% | 85.6% | 1356 | 0.01 / 0.01 = 1 | ortholog_one2one: EIF4A1 | 3 |
p2 | q2 | +/+ | ENSP00000250092 | CD68 | q2 | q2 | 407 | 16 | 7306609 | 7307874 | 1 | 3 | 84.2% | 75.7% | 1023 | 1 / 0.01 = 100 | ortholog_one2one: CD68 | 1 |
p3 | q3 | +/+ | ENSP00000352876 | MPDU1 | q3 | q3 | 429 | 16 | 7310601 | 7314295 | 1 | 6 | 91.5% | 97.8% | 690 | 1 / 0.01 = 100 | ortholog_one2one: MPDU1 | 1 |
p4 | --- | gapq | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q4 | +/+ | ENSP00000250113 | FXR2 | q4 | q4 | 1061 | 16 | 7318850 | 7334765 | -1 | 14 | 85.8% | 93.9% | 1881 | 0.47 / 0.08 = 5.88 | ortholog_one2one: FXR2 | 1 |
p6 | q5 | +/+ | ENSP00000369833 | SAT2 | q5 | q5 | 339.6 | 16 | 7355830 | 7357124 | -1 | 4 | 69.5% | 90.9% | 528 | 1 / 0.19 = 5.26 | ortholog_one2one: SAT2 | 1 |
p7 | q6 | +/+ | ENSP00000369816 | SHBG | q6 | q6 | 726.6 | 16 | 7361379 | 7364563 | 1 | 7 | 100% | 78.1% | 1416 | 0.92 / 0.01 = 92 | ortholog_one2one: SHBG | 1 |
p8 | q7 | +/+ | ENSP00000250111 | ATP1B2 | q7 | q7 | 591.6 | 16 | 7380276 | 7384784 | 1 | 5 | 93.8% | 86.4% | 948 | 0.72 / 0.01 = 72 | ortholog_one2one: ATP1B2 | 1 |
p9 | q8 | +/+ | ENSP00000269305 | TP53 | q8 | q8 | 597.8 | 16 | 7400622 | 7407231 | -1 | 6 | 88.3% | 85.3% | 1146 | 0.79 / 0.16 = 4.94 | ortholog_one2one: P53_MACMU | 1 |
p10 | q9 | +/+ | ENSP00000324203 | WDR79 | q9 | q9 | 809.5 | 16 | 7419140 | 7438475 | 1 | 7 | 84.3% | 83.6% | 1611 | 0.93 / 0.16 = 5.81 | ortholog_one2one: WDR79 | 1 |
p11 | q10 | +/+ | ENSP00000369794 | EFNB3 | q10 | q10 | 424.2 | 16 | 7442830 | 7444626 | 1 | 4 | 71.8% | 88.1% | 783 | 0.6 / 0.1 = 6 | ortholog_one2one: EFNB3 | 1 |
p12 | q11 | +/+ | ENSP00000082259 | DNAH2 | q11 | q11 | 1269.4 | 16 | 7463306 | 7481504 | 1 | 9 | 71.1% | 89.9% | 1989 | 0.93 / 0.23 = 4.04 | ortholog_one2one: DNAH2 | 1 |
p13 | q12 | +/+ | ENSP00000340658 | DNAH2 | q12 | q12 | 232 | 16 | 7517536 | 7518630 | 1 | 2 | 100% | 97.4% | 351 | 0.41 / 0.06 = 6.83 | ortholog_one2one: DNAH2 | 1 |
region 3 (region 1 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 5 -i 35491813:35642301 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=183.64 log_scoreRatio_sum=23.28 focal_scoreRatio_sum=69.26
AlnScore=10838 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 780.6 | 5 | 35491813 | 35495903 | 1 | 9 | 91.9% | 95.7% | 1182 | 0.01 / 0.01 = 1 | ortholog_one2many: 612030 | 1 |
p2 | q2 | +/+ | ENSP00000250092 | CD68 | q2 | q2 | 286.5 | 5 | 35497160 | 35498735 | 1 | 4 | 96.3% | 49.9% | 1098 | 1 / 0.09 = 11.11 | ortholog_one2one: 489476 | 1 |
p3 | q3 | +/+ | ENSP00000352876 | MPDU1 | q3 | q3 | 347.9 | 5 | 35500314 | 35502889 | 1 | 5 | 83% | 82.2% | 639 | 1 / 0.17 = 5.88 | ortholog_one2one: 489477 | 1 |
p4 | q4 | +/+ | ENSP00000355354 | SOX15 | q4 | q4 | 281.7 | 5 | 35503686 | 35504942 | -1 | 2 | 100% | 84.5% | 699 | 0.65 / 0.21 = 3.1 | ortholog_one2one: SOX15 | 1 |
p5 | q5 | +/+ | ENSP00000250113 | FXR2 | q5 | q5 | 1072.6 | 5 | 35506970 | 35514511 | -1 | 13 | 92.4% | 81% | 2241 | 0.47 / 0.07 = 6.71 | apparent_ortholog_one2one: 489478 | 1 |
p6 | q6 | +/+ | ENSP00000369833 | SAT2 | q6 | q6 | 218.7 | 5 | 35530096 | 35531048 | -1 | 3 | 47.4% | 76.7% | 387 | 1 / 0.48 = 2.08 | ortholog_one2one: 479486 | 1 |
p7 | q7 | +/+ | ENSP00000369816 | SHBG | q7 | q7 | 538.9 | 5 | 35533275 | 35536202 | 1 | 6 | 83.3% | 77.7% | 1065 | 0.92 / 0.26 = 3.54 | ortholog_one2one: 479487 | 1 |
p8 | q8 | +/+ | ENSP00000250111 | ATP1B2 | q8 | q8 | 584.9 | 5 | 35544767 | 35549006 | 1 | 5 | 93.8% | 85% | 960 | 0.72 / 0.01 = 72 | ortholog_one2one: 489479 | 1 |
p9 | q9 | +/+ | ENSP00000269305 | TP53 | q9 | q9 | 463.6 | 5 | 35557711 | 35560427 | -1 | 5 | 81.9% | 69.6% | 1056 | 0.79 / 0.35 = 2.26 | ortholog_one2one: P53_CANFA | 1 |
p10 | q10 | +/+ | ENSP00000324203 | WDR79 | q10 | q10 | 810.7 | 5 | 35570956 | 35581731 | 1 | 9 | 94.9% | 73.5% | 1737 | 0.93 / 0.16 = 5.81 | ortholog_one2one: 607892 | 1 |
p11 | q11 | +/+ | ENSP00000369794 | EFNB3 | q11 | q11 | 472.6 | 5 | 35586333 | 35587976 | 1 | 4 | 86.5% | 89.1% | 909 | 0.6 / 0.01 = 60 | noComparaHits: | 1 |
p12 | q12 | +/+ | ENSP00000082259 | DNAH2 | q12 | q12 | 1182.8 | 5 | 35602028 | 35615929 | 1 | 10 | 70.1% | 86.3% | 1884 | 0.93 / 0.28 = 3.32 | ortholog_one2one: DNAH2 | 1 |
p13 | q13 | +/+ | ENSP00000340658 | DNAH2 | q13 | q13 | 234 | 5 | 35641437 | 35642301 | 1 | 2 | 100% | 94% | 351 | 0.41 / 0.06 = 6.83 | ortholog_one2one: DNAH2 | 1 |
region 4 (region 2 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 7139684:7499935 -f 27e4 some_geneID_to_be_selected
scoreRatio_sum=577 log_scoreRatio_sum=30.64 focal_scoreRatio_sum=138.8
AlnScore=8000 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 757.3 | 17 | 7418588 | 7422525 | 1 | 7 | 91.4% | 83.6% | 1353 | 0.01 / 0.01 = 1 | within_species_paralog: EIF4A1 | 1 |
p2 | q2 | +/+ | ENSP00000250092 | CD68 | q2 | q2 | 317.9 | 17 | 7423803 | 7425110 | 1 | 3 | 86.2% | 60.2% | 1077 | 1 / 0.01 = 100 | within_species_paralog: CD68 | 1 |
p3 | q3 | +/+ | ENSP00000352876 | MPDU1 | q3 | q3 | 423.9 | 17 | 7427905 | 7431590 | 1 | 6 | 90.3% | 98.7% | 687 | 1 / 0.01 = 100 | within_species_paralog: MPDU1 | 1 |
p4 | q4 | +/+ | ENSP00000355354 | SOX15 | q4 | q4 | 357.4 | 17 | 7432423 | 7433718 | -1 | 2 | 100% | 100% | 699 | 0.65 / 0.01 = 65 | noComparaHits: SOX15
; MPDU1 |
1 |
p5 | q5 | +/+ | ENSP00000250113 | FXR2 | q5 | q5 | 1157 | 17 | 7435801 | 7449792 | -1 | 15 | 94.1% | 94.2% | 2085 | 0.47 / 0.01 = 47 | within_species_paralog: FXR2 | 1 |
p6 | q6 | +/+ | ENSP00000369833 | SAT2 | q6 | q6 | 421.7 | 17 | 7470493 | 7471898 | -1 | 4 | 100% | 72.7% | 1044 | 1 / 0.01 = 100 | within_species_paralog: SAT2 | 1 |
p7 | q7 | +/+ | ENSP00000369816 | SHBG | q7 | q7 | 730.3 | 17 | 7474216 | 7477392 | 1 | 7 | 100% | 84.3% | 1422 | 0.92 / 0.01 = 92 | within_species_paralog: SHBG | 1 |
p8 | q8 | +/+ | ENSP00000250111 | ATP1B2 | q8 | q8 | 593.5 | 17 | 7495562 | 7499935 | 1 | 5 | 93.8% | 87.5% | 936 | 0.72 / 0.01 = 72 | within_species_paralog: ATP1B2 | 1 |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 5 (region 1 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7265 -i 43378:57925 -f 11e3 some_geneID_to_be_selected
scoreRatio_sum=2.03 log_scoreRatio_sum=0.03 focal_scoreRatio_sum=0.28
AlnScore=1302 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 744.3 | contig_7265 | 43378 | 47219 | 1 | 9 | 92.1% | 88.4% | 1167 | 0.01 / 0.01 = 1 | noComparaHits: ENSGACG00000020072 | 1 |
p2 | --- | gapq | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | /+ | ENSP00000355354 | SOX15 | q2 | q2 | 129 | contig_7265 | 57569 | 57925 | 1 | 1 | 51.1% | 58% | 357 | 0.65 / 0.63 = 1.03 | noComparaHits: ENSGACG00000020077 | 1 |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 6 (region 2 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2922 -i 146189:167106 -f 16e3 some_geneID_to_be_selected
scoreRatio_sum=3.87 log_scoreRatio_sum=1.21 focal_scoreRatio_sum=0.84
AlnScore=1123 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000082259 | DNAH2 | q1 | q1 | 473.7 | contig_2922 | 158590 | 167106 | -1 | 7 | 51.6% | 49.2% | 1365 | 0.93 / 0.71 = 1.31 | noComparaHits: ENSGACG00000012383 | 1 |
p13 | q2 | +/+ | ENSP00000340658 | DNAH2 | q2 | q2 | 208.5 | contig_2922 | 146189 | 147502 | -1 | 2 | 100% | 85.8% | 360 | 0.41 / 0.16 = 2.56 | noComparaHits: ENSGACG00000012383 | 1 |
region 7 (region 2 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 9 -i 27575873:27577069 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=1015 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 769 | 9 | 27575873 | 27577069 | 1 | 1 | 98.3% | 100% | 1197 | 0.01 / 0.01 = 1 | noComparaHits: 612030 | 2 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 8 (region 2 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 10 -i 49521525:49522742 -f 91e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=1014 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 768 | 10 | 49521525 | 49522742 | -1 | 1 | 100% | 99.3% | 1218 | 0.01 / 0.01 = 1 | between_species_paralog: ENSMMUG00000007545 | 1 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 9 (region 1 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 9 -i 17296165:17301508 -f 40e2 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=1009 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 764.5 | 9 | 17296165 | 17301508 | 1 | 9 | 95.3% | 84.3% | 1278 | 0.01 / 0.01 = 1 | ortholog_one2many: IF4A2_CHICK | 1 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 10 (region 3 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l X -i 91254920:91256116 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=993 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 752 | X | 91254920 | 91256116 | -1 | 1 | 98.3% | 95.5% | 1197 | 0.01 / 0.01 = 1 | noComparaHits: PCDH11X | 2 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 11 (region 4 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l Y -i 5265809:5267005 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=0.5 log_scoreRatio_sum=-0.68 focal_scoreRatio_sum=0.06
AlnScore=978 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 741 | Y | 5265809 | 5267005 | -1 | 1 | 98.3% | 93.7% | 1197 | 0.01 / 0.02 = 0.5 | within_species_paralog: ENSG00000173394 | 4 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 12 (region 5 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 28070975:28072186 -f 91e1 some_geneID_to_be_selected
scoreRatio_sum=0.2 log_scoreRatio_sum=-1.6 focal_scoreRatio_sum=0.02
AlnScore=940 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 712 | 13 | 28070975 | 28072186 | 1 | 1 | 99.5% | 88.9% | 1212 | 0.01 / 0.05 = 0.2 | noComparaHits: | 5 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 13 (region 6 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 36410458:36411663 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=0.13 log_scoreRatio_sum=-2.03 focal_scoreRatio_sum=0.01
AlnScore=911 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 690 | 13 | 36410458 | 36411663 | -1 | 3 | 98.8% | 87% | 1200 | 0.01 / 0.08 = 0.13 | noComparaHits: | 6 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 14 (region 3 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 15 -i 39512119:39513329 -f 91e1 some_geneID_to_be_selected
scoreRatio_sum=0.13 log_scoreRatio_sum=-2.03 focal_scoreRatio_sum=0.01
AlnScore=910 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 689.3 | 15 | 39512119 | 39513329 | 1 | 2 | 99.8% | 84.7% | 1209 | 0.01 / 0.08 = 0.13 | noComparaHits: | 4 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 15 (region 3 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5451 -i 8271:11215 -f 22e2 some_geneID_to_be_selected
scoreRatio_sum=0.07 log_scoreRatio_sum=-2.65 focal_scoreRatio_sum=0.01
AlnScore=849 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 643.7 | contig_5451 | 8271 | 11215 | -1 | 6 | 88.2% | 71.8% | 1335 | 0.01 / 0.15 = 0.07 | noComparaHits: ENSGACG00000016054 | 2 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 16 (region 3 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 9 -i 91623426:91624941 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.06 log_scoreRatio_sum=-2.8 focal_scoreRatio_sum=0.01
AlnScore=837 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 634.1 | 9 | 91623426 | 91624941 | 1 | 4 | 92.1% | 82.1% | 1134 | 0.01 / 0.16 = 0.06 | noComparaHits: CPEB3 | 4 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 17 (region 2 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 9 -i 17990822:18256134 -f 20e4 some_geneID_to_be_selected
scoreRatio_sum=1.9 log_scoreRatio_sum=-0.1 focal_scoreRatio_sum=0.35
AlnScore=817 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000355354 | SOX15 | q1 | q1 | 123 | 9 | 17990822 | 17991145 | -1 | 1 | 48.5% | 60.2% | 324 | 0.65 / 0.65 = 1 | noComparaHits: SOX2_CHICK | 1 |
p5 | q2 | +/+ | ENSP00000250113 | FXR2 | q2 | q2 | 548 | 9 | 18243070 | 18256134 | -1 | 8 | 53.4% | 68.8% | 1194 | 0.47 / 0.52 = 0.9 | ortholog_one2many: Q5F3S6_CHICK | 1 |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 18 (region 7 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 10 -i 93886614:93888106 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.06 log_scoreRatio_sum=-2.8 focal_scoreRatio_sum=0.01
AlnScore=812 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 615.3 | 10 | 93886614 | 93888106 | 1 | 4 | 89.4% | 83.7% | 1077 | 0.01 / 0.18 = 0.06 | noComparaHits: CPEB3 | 7 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 19 (region 8 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 60109024:60110232 -f 91e1 some_geneID_to_be_selected
scoreRatio_sum=0.04 log_scoreRatio_sum=-3.21 focal_scoreRatio_sum=0
AlnScore=710 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 538 | 13 | 60109024 | 60110232 | -1 | 1 | 100% | 71.3% | 1209 | 0.01 / 0.28 = 0.04 | noComparaHits: | 9 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 20 (region 4 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 11 -i 26600617:26601745 -f 85e1 some_geneID_to_be_selected
scoreRatio_sum=0.03 log_scoreRatio_sum=-3.5 focal_scoreRatio_sum=0
AlnScore=690 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 523 | 11 | 26600617 | 26601745 | -1 | 2 | 92.9% | 66.8% | 1128 | 0.01 / 0.3 = 0.03 | noComparaHits: ENSMMUG00000007050 | 5 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 21 (region 4 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5454 -i 626:55197 -f 41e3 some_geneID_to_be_selected
scoreRatio_sum=2.2 log_scoreRatio_sum=0.18 focal_scoreRatio_sum=0.77
AlnScore=690 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000355354 | SOX15 | q1 | q1 | 122 | contig_5454 | 54952 | 55197 | 1 | 1 | 35.2% | 74.4% | 246 | 0.65 / 0.65 = 1 | noComparaHits: ENSGACG00000015720 | 4 |
p5 | --- | gapq | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q2 | /+ | ENSP00000250111 | ATP1B2 | q2 | q2 | 234.2 | contig_5454 | 626 | 2672 | 1 | 4 | 75.5% | 44.4% | 807 | 0.72 / 0.6 = 1.2 | noComparaHits: | 3 |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 22 (region 5 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 19274115:19275039 -f 69e1 some_geneID_to_be_selected
scoreRatio_sum=0.03 log_scoreRatio_sum=-3.5 focal_scoreRatio_sum=0
AlnScore=623 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 472 | 3 | 19274115 | 19275039 | 1 | 2 | 75.9% | 77.6% | 924 | 0.01 / 0.37 = 0.03 | noComparaHits: | 6 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 23 (region 9 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l X -i 52878477:52879674 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=588 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 446 | X | 52878841 | 52879674 | -1 | 1 | 69.5% | 79.5% | 834 | 0.01 / 0.41 = 0.02 | noComparaHits: | noData |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 24 (region 5 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_395 -i 159149:281161 -f 92e3 some_geneID_to_be_selected
scoreRatio_sum=1.87 log_scoreRatio_sum=-0.12 focal_scoreRatio_sum=0.78
AlnScore=576 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000250111 | ATP1B2 | q1 | q1 | 141.3 | contig_395 | 242803 | 243448 | -1 | 3 | 53.1% | 42.6% | 483 | 0.72 / 0.76 = 0.95 | noComparaHits: ENSGACG00000015325 | 4 |
p9 | --- | gapq | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q2 | +/+ | ENSP00000369794 | EFNB3 | q2 | q2 | 162.4 | contig_395 | 159149 | 163815 | -1 | 2 | 41.2% | 53.6% | 411 | 0.6 / 0.65 = 0.92 | noComparaHits: ENSGACG00000015366 | 1 |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 25 (region 6 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 7 -i 164954650:165295660 -f 26e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=569 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 431 | 7 | 164954650 | 164955774 | 1 | 1 | 83.3% | 63.5% | 1125 | 0.01 / 0.43 = 0.02 | between_species_paralog: ENSMMUG00000019847 | 7 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 26 (region 3 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 3 -i 17373823:17380122 -f 47e2 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=548 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 415.4 | 3 | 17373823 | 17380122 | 1 | 6 | 66% | 63.2% | 936 | 0.01 / 0.45 = 0.02 | between_species_paralog: Q5ZM36_CHICK | 2 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 27 (region 7 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 17 -i 8240171:8240910 -f 56e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=487 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 369 | 17 | 8240171 | 8240785 | 1 | 1 | 50.5% | 93.2% | 615 | 0.01 / 0.51 = 0.02 | noComparaHits: | 9 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 28 (region 4 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 1 -i 113951057:113960499 -f 71e2 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=460 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 349 | 1 | 113951458 | 113960499 | -1 | 2 | 64.5% | 68.9% | 771 | 0.01 / 0.53 = 0.02 | noComparaHits: | 6 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 29 (region 10 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 12 -i 41112065:41113426 -f 10e2 some_geneID_to_be_selected
scoreRatio_sum=0.82 log_scoreRatio_sum=-0.19 focal_scoreRatio_sum=0.16
AlnScore=427 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000250113 | FXR2 | q1 | q1 | 495 | 12 | 41112065 | 41113426 | -1 | 3 | 67.8% | 56.5% | 1311 | 0.47 / 0.57 = 0.82 | noComparaHits: PPHLN1 | 3 |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 30 (region 4 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 18832580:18844370 -f 88e2 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.16
AlnScore=396 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000250113 | FXR2 | q1 | q1 | 458.9 | 4 | 18832580 | 18844370 | -1 | 7 | 40.1% | 67.3% | 954 | 0.47 / 0.6 = 0.78 | between_species_paralog: Q5ZHM3_CHICK | 2 |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 31 (region 5 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 17 -i 51510985:51512006 -f 77e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=384 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 290.9 | 17 | 51510985 | 51512006 | -1 | 2 | 70.4% | 58.8% | 843 | 0.01 / 0.61 = 0.02 | noComparaHits: | 8 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 32 (region 6 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 20 -i 41662060:41663356 -f 97e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=364 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 276 | 20 | 41662244 | 41663356 | 1 | 2 | 74.9% | 55.2% | 894 | 0.01 / 0.63 = 0.02 | noComparaHits: 476610 | 9 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 33 (region 7 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 3 -i 63014769:63015872 -f 83e1 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=359 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 272 | 3 | 63014769 | 63015872 | 1 | 1 | 91.4% | 38.7% | 1104 | 0.01 / 0.64 = 0.02 | noComparaHits: ENSCAFG00000014560 | 10 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 34 (region 6 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7234 -i 9034:13970 -f 37e2 some_geneID_to_be_selected
scoreRatio_sum=1.43 log_scoreRatio_sum=0.36 focal_scoreRatio_sum=0.72
AlnScore=344 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000324203 | WDR79 | q1 | q1 | 334.4 | contig_7234 | 9034 | 13970 | -1 | 4 | 45.4% | 53.3% | 951 | 0.93 / 0.65 = 1.43 | noComparaHits: ENSGACG00000019923
; ENSGACG00000019924 |
1 |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 35 (region 8 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 9 -i 63747830:63749526 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=342 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 259 | 9 | 63747879 | 63749526 | -1 | 2 | 45.8% | 69.5% | 558 | 0.01 / 0.65 = 0.02 | noComparaHits: KIAA0974 | noData |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 36 (region 5 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 10594884:10595111 -f 17e1 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.16
AlnScore=302 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000355354 | SOX15 | q1 | q1 | 108 | 4 | 10594884 | 10595111 | 1 | 1 | 32.6% | 78.9% | 228 | 0.65 / 0.69 = 0.94 | noComparaHits: CH03_CHICK | 3 |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 37 (region 6 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 3 -i 97427132:97427383 -f 19e1 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.15
AlnScore=288 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000355354 | SOX15 | q1 | q1 | 103 | 3 | 97427132 | 97427383 | 1 | 1 | 36.1% | 58.3% | 252 | 0.65 / 0.71 = 0.92 | noComparaHits: NP_990518.1 | 5 |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 38 (region 8 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 10 -i 36516719:36517909 -f 89e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=287 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 218 | 10 | 36516719 | 36517300 | -1 | 1 | 48.3% | 61.2% | 582 | 0.01 / 0.71 = 0.01 | noComparaHits: | noData |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 39 (region 9 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l X -i 51177106:51178307 -f 90e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=285 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 216 | X | 51177452 | 51177904 | -1 | 1 | 37.4% | 71.6% | 453 | 0.01 / 0.71 = 0.01 | noComparaHits: | noData |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 40 (region 7 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7228 -i 5271:5552 -f 21e1 some_geneID_to_be_selected
scoreRatio_sum=0.83 log_scoreRatio_sum=-0.18 focal_scoreRatio_sum=0.28
AlnScore=278 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000369794 | EFNB3 | q1 | q1 | 132 | contig_7228 | 5271 | 5552 | -1 | 1 | 27.9% | 66.7% | 282 | 0.6 / 0.72 = 0.83 | noComparaHits: | 2 |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 41 (region 9 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 16 -i 27739703:27740764 -f 80e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=252 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 191 | 16 | 27739703 | 27740764 | 1 | 1 | 86% | 32.4% | 1062 | 0.01 / 0.74 = 0.01 | noComparaHits: ENSCAFG00000025254
; 607579 |
noData |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 42 (region 10 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l X -i 18730671:18731699 -f 77e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=248 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 188 | X | 18730671 | 18731699 | 1 | 1 | 83.3% | 33.3% | 1029 | 0.01 / 0.75 = 0.01 | noComparaHits: | noData |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 43 (region 10 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l X -i 20795562:20796596 -f 78e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=245 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 186 | X | 20795562 | 20796596 | 1 | 1 | 83.7% | 32.3% | 1035 | 0.01 / 0.75 = 0.01 | noComparaHits: DDX53 | noData |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 44 (region 7 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 1015346:1015633 -f 22e1 some_geneID_to_be_selected
scoreRatio_sum=0.8 log_scoreRatio_sum=-0.21 focal_scoreRatio_sum=0.27
AlnScore=244 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000369794 | EFNB3 | q1 | q1 | 116 | 4 | 1015346 | 1015633 | -1 | 1 | 29.7% | 50.5% | 288 | 0.6 / 0.75 = 0.8 | between_species_paralog: EFNB1_CHICK | 1 |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 45 (region 8 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 145275148:145295053 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.26
AlnScore=225 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000369794 | EFNB3 | q1 | q1 | 107 | 1 | 145275148 | 145275432 | 1 | 1 | 28.8% | 49% | 285 | 0.6 / 0.77 = 0.78 | between_species_paralog: NP_990155.1 | 2 |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 46 (region 8 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_6895 -i 3782:50663 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.47
AlnScore=225 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000250111 | ATP1B2 | q1 | q1 | 133.6 | contig_6895 | 49752 | 50663 | -1 | 2 | 51.7% | 39.3% | 432 | 0.72 / 0.77 = 0.94 | noComparaHits: ENSGACG00000015312 | 6 |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 47 (region 9 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_286 -i 2880:4040 -f 87e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=209 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 159 | contig_286 | 2880 | 4040 | -1 | 1 | 87.4% | 28.1% | 1161 | 0.01 / 0.79 = 0.01 | noComparaHits: ENSGACG00000016367 | 4 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 48 (region 10 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_10078 -i 8927:9988 -f 80e1 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=209 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000369881 | EIF4A1 | q1 | q1 | 159 | contig_10078 | 8927 | 9988 | -1 | 1 | 86% | 29.2% | 1062 | 0.01 / 0.79 = 0.01 | noComparaHits: ENSGACG00000002948 | 4 |
p2 | --- | gape | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gape | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000269305 | TP53 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 49 (region 9 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 21 -i 917987:918954 -f 73e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=1
AlnScore=200 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000269305 (contained in p9)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000369881 | EIF4A1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000250092 | CD68 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000352876 | MPDU1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000355354 | SOX15 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000250113 | FXR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000369833 | SAT2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000369816 | SHBG | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000250111 | ATP1B2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q1 | +/+ | ENSP00000269305 | TP53 | q1 | q1 | 143.7 | 21 | 917987 | 918954 | -1 | 2 | 26.5% | 63.5% | 312 | 0.79 / 0.79 = 1 | between_species_paralog: 419382 | 2 |
p10 | --- | gape | ENSP00000324203 | WDR79 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000369794 | EFNB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000082259 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000340658 | DNAH2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |