Overview on processed synteny regions for DHX15_ENSG00000109606_2e6.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=1598815988116667.3303.73Homo_sapiens4 24138648 24195114 14 95.5% 91.6% -1 1623.4 within_species_paralog: DHX15
2region2, score=1439414394569.9248.1186.5Macaca_mulatta5 19282591 19339823 14 95.5% 91.3% -1 1622.4 ortholog_one2one: DHX15
3region3, score=1247212472417.0635.62114.98Canis_familiaris3 88383320 88434677 13 92.5% 94% 1 1547 ortholog_one2one: 488856
4region4, score=98409840133.9517.7959.33Gallus_gallus4 76226722 76266240 13 92.7% 89.4% 1 1492.5 ortholog_one2one: Q5F3A9_CHICK
5region5, score=2680268011.913.897.18Gasterosteus_aculeatuscontig_7166 33022 52442 13 86.4% 87.4% -1 1412.9 noComparaHits: ENSGACG00000019549
6region6, score=231023109.142.865.88Gasterosteus_aculeatuscontig_3215 72789 78427 10 86.3% 76.7% 1 1356.3 noComparaHits: ENSGACG00000017826
7region7, score=197519756.121.51.77Canis_familiaris28
8region8, score=1409140988.854.3144.28Gallus_gallus4
9region9, score=1250125012.962.444.96Macaca_mulatta4 30235483 30244212 7 48.7% 53.7% -1 481.4 between_species_paralog: Q5TM65_MACMU
10region10, score=120112012.98-0.120.53Gallus_gallus6
11region11, score=118511852.150.140.62Macaca_mulatta13
12region12, score=118511852.150.140.62Macaca_mulatta13
13region13, score=111711172.46-0.630.36Gallus_gallus13
14region14, score=103610361.36-1.010.19Homo_sapiens11
15region15, score=103410341.34-1.030.19Macaca_mulatta14
16region16, score=978978200.42Homo_sapiens10
17region17, score=975975263.268.67Macaca_mulatta5
18region18, score=9279271.710.540.57Canis_familiaris30
19region19, score=872872100.33Homo_sapiens8
20region20, score=8318313.191.160.25Gasterosteus_aculeatuscontig_8251
21region21, score=8248241.21-1.480.17Macaca_mulatta6
22region22, score=8078071.21-1.550.17Homo_sapiens5
23region23, score=7967961.73-0.30.37Macaca_mulatta9
24region24, score=7717711.08-1.590.14Canis_familiaris24
25region25, score=7597591.26-1.430.18Canis_familiaris4
26region26, score=6936930.4-0.910.13Homo_sapiens4
27region27, score=6726720.38-0.960.13Canis_familiaris16
28region28, score=6716710.38-0.960.13Gallus_gallus4
29region29, score=6566560.36-1.010.12Homo_sapiens2
30region30, score=5715711.140.130.28Gallus_gallus6
31region31, score=5125121.080.080.36Gasterosteus_aculeatuscontig_7157
32region32, score=4874871.020.020.34Gallus_gallus7
33region33, score=4764760.92-0.070.23Gasterosteus_aculeatuscontig_1837
34region34, score=4724720.92-0.070.23Gasterosteus_aculeatuscontig_5107
35region35, score=4674670.91-0.080.23Canis_familiaris25
36region36, score=4664660.91-0.080.23Homo_sapiens8
37region37, score=4654650.91-0.080.23Macaca_mulatta8
38region38, score=461461100.08Homo_sapiens9
39region39, score=4534530.96-0.030.32Canis_familiaris19
40region40, score=4484481.52-0.560.13Gasterosteus_aculeatuscontig_5895
41region41, score=4334330.93-0.060.31Gasterosteus_aculeatuscontig_7645
42region42, score=4244240.89-0.110.07Macaca_mulatta15
43region43, score=4154150.21-1.550.07Gasterosteus_aculeatuscontig_8176
44region44, score=4084080.21-1.550.07Canis_familiaris3
45region45, score=4034030.88-0.120.29Gasterosteus_aculeatuscontig_7647
46region46, score=3693690.19-1.650.06Gallus_gallus5
47region47, score=2482480.69-0.360.23Gallus_gallus1
48region48, score=2202201.4-0.710.79Canis_familiaris20 44104429 44104998 1 23.6% 40.5% -1 137 noComparaHits: 476639
49region49, score=1181180.76-0.260.76Homo_sapiens3 47862863 47864453 2 32.1% 40.3% 1 191.6 noComparaHits: DHX30

Data table for reference protein loci

QueryProtein(s)=ENSP00000336741 (contained in p4)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 - ENSP00000295296 ENST00000295296 ENSG00000163144 - 4 22204917 22205171 22205040 1 1 84 160
p2 GBA3 ENSP00000314501 ENST00000317327 ENSG00000176201 GBA3_HUMAN 4 22303737 22429602 22358409 1 5 455 928.6
643751 ENSP00000282947 ENST00000282947 ENSG00000152994 643751 4 22338096 22338671 22338378 -1 1 191 368
p3 PPARGC1A ENSP00000371556 ENST00000382122 ENSG00000109819 PRGC1_HUMAN 4 23406543 23500678 23425001 -1 13 798 1101
p4 DHX15 ENSP00000336741 ENST00000336812 ENSG00000109606 DHX15_HUMAN 4 24138645 24195114 24159624 -1 14 795 1623.4
p5 SOD3 ENSP00000226877 ENST00000226877 ENSG00000109610 SODE_HUMAN 4 24410242 24410964 24410599 1 1 240 443
p6 NP_775734.1 ENSP00000374264 ENST00000389613 ENSG00000181982 Q6ZUS6_HUMAN 4 24419112 24463899 24442261 -1 9 441 668.2
p7 LGI2 ENSP00000371548 ENST00000382114 ENSG00000153012 LGI2_HUMAN 4 24614171 24641413 24614984 -1 8 545 981.8
p8 UGTAP_HUMAN ENSP00000351857 ENST00000358971 ENSG00000109618 UGTAP_HUMAN 4 24734651 24771089 24762725 -1 11 501 1011.8
p9 PI4K2B ENSP00000264864 ENST00000264864 ENSG00000038210 NP_060793.1 4 24844884 24887907 24867356 1 10 481 948.6
p10 ZCCHC4 ENSP00000303468 ENST00000302874 ENSG00000168228 ZCHC4_HUMAN 4 24923530 24979884 24960218 1 13 513 1092.2
p11 ANAPC4 ENSP00000371506 ENST00000382074 ENSG00000053900 ANC4_HUMAN 4 24988148 25029102 25007615 1 28 808 1181.5
p12 P78389_HUMAN ENSP00000308272 ENST00000309830 ENSG00000173025 P78389_HUMAN 4 25234055 25234195 25234121 1 1 47 92
p13 SLC34A2 ENSP00000371483 ENST00000382051 ENSG00000157765 NPT2B_HUMAN 4 25273221 25287469 25282426 1 12 690 1326
p14 NP_056002.1 ENSP00000264868 ENST00000264868 ENSG00000091490 NP_056002.1 4 25359145 25474232 25415279 -1 24 1097 2283.6
p15 Q9BRT5_HUMAN ENSP00000317556 ENST00000326140 ENSG00000180408 Q9BRT5_HUMAN 4 25524917 25539911 25525073 1 3 106 130
p16 RBPSUH ENSP00000345206 ENST00000342295 ENSG00000168214 SUH_HUMAN 4 25931477 26041727 26035425 1 11 500 980.4
p17 CCKAR ENSP00000295589 ENST00000295589 ENSG00000163394 CCKAR_HUMAN 4 26092358 26100987 26093982 -1 5 428 779.5
total length of ref-loci (on slice) = 3896071 (39e5)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p1, q15 p1, q16 p1, q17 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p2, q15 p2, q16 p2, q17 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p3, q15 p3, q16 p3, q17 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p4, q15 p4, q16 p4, q17 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p5, q15 p5, q16 p5, q17 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p6, q15 p6, q16 p6, q17 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p7, q15 p7, q16 p7, q17 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p8, q15 p8, q16 p8, q17 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p9, q15 p9, q16 p9, q17 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p10, q15 p10, q16 p10, q17 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p11, q15 p11, q16 p11, q17 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p12, q15 p12, q16 p12, q17 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p13, q15 p13, q16 p13, q17 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p14, q15 p14, q16 p14, q17 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14 p15, q15 p15, q16 p15, q17 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p16, q10 p16, q11 p16, q12 p16, q13 p16, q14 p16, q15 p16, q16 p16, q17 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p17, q10 p17, q11 p17, q12 p17, q13 p17, q14 p17, q15 p17, q16 p17, q17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 1 (region 1 for Hsap)
region1, score=15988 region1, score=15988
syntenyRegion: Homo_sapiens.glob01.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 4 -i 22204917:26100987 -f 29e5 some_geneID_to_be_selected
scoreRatio_sum=1166 log_scoreRatio_sum=67.3 focal_scoreRatio_sum=303.73
AlnScore=15988 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000295296 - q1 q1 160 4 22204917 22205168 1 1 100% 100% 252 0.18 / 0.01 = 18 within_species_paralog: ENSG00000163144 1
--- q2 gapp - - - q2 - - - - - - - - - - - -
p2 q3 +/+ ENSP00000314501 GBA3 q3 q3 928.6 4 22346701 22429599 1 4 95.8% 99.8% 1314 0.52 / 0.01 = 52 within_species_paralog: GBA3 1
ENSP00000282947 643751 q2 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 q4 +/+ ENSP00000371556 PPARGC1A q4 q4 1101 4 23412452 23495658 -1 7 75.3% 97.5% 1824 0.88 / 0.01 = 88 within_species_paralog: PPARGC1A 1
p4 q5 +/+ ENSP00000336741 DHX15 q5 q5 1623.4 4 24138648 24195114 -1 14 95.5% 91.6% 2493 0.67 / 0.01 = 67 within_species_paralog: DHX15 1
p5 q6 +/+ ENSP00000226877 SOD3 q6 q6 443 4 24410281 24410961 1 1 94.6% 100% 681 0.79 / 0.01 = 79 noComparaHits: SOD3 1
p6 q7 +/+ ENSP00000374264 NP_775734.1 q7 q7 668.2 4 24419112 24463899 -1 6 83.7% 98.1% 1125 1 / 0.01 = 100 noComparaHits: NP_775734.1 1
p7 q8 +/+ ENSP00000371548 LGI2 q8 q8 981.8 4 24614174 24641398 -1 5 87.5% 92.4% 1542 0.48 / 0.01 = 48 within_species_paralog: LGI2 1
p8 q9 +/+ ENSP00000351857 UGTAP_HUMAN q9 q9 1011.8 4 24734654 24769905 -1 9 98.2% 82.4% 1758 1 / 0.01 = 100 noComparaHits: UGTAP_HUMAN 1
p9 q10 +/+ ENSP00000264864 PI4K2B q10 q10 948.6 4 24844884 24887904 1 9 95.8% 97.7% 1434 0.48 / 0.01 = 48 within_species_paralog: PI4K2B 1
p10 q11 +/+ ENSP00000303468 ZCCHC4 q11 q11 1092.2 4 24923530 24979881 1 12 96.7% 91.1% 1644 1 / 0.01 = 100 noComparaHits: ZCCHC4 1
p11 q12 +/+ ENSP00000371506 ANAPC4 q12 q12 1181.5 4 24988148 25029090 1 15 69.2% 96.7% 1743 1 / 0.01 = 100 noComparaHits: ANAPC4 1
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q13 +/+ ENSP00000371483 SLC34A2 q13 q13 1326 4 25273221 25287466 1 12 99.1% 92.5% 2169 0.6 / 0.01 = 60 within_species_paralog: SLC34A2 1
p14 q14 +/+ ENSP00000264868 NP_056002.1 q14 q14 2283.6 4 25359148 25458584 -1 20 96.4% 94.7% 3333 1 / 0.01 = 100 noComparaHits: NP_056002.1 1
p15 q15 +/+ ENSP00000317556 Q9BRT5_HUMAN q15 q15 130 4 25524917 25525147 1 1 72.6% 97.4% 231 1 / 0.01 = 100 noComparaHits: Q9BRT5_HUMAN 1
p16 q16 +/+ ENSP00000345206 RBPSUH q16 q16 980.4 4 26016893 26041673 1 9 89.8% 97.4% 1377 0.51 / 0.01 = 51 within_species_paralog: RBPSUH 1
p17 q17 +/+ ENSP00000295589 CCKAR q17 q17 779.5 4 26092373 26100987 -1 5 99.1% 93.4% 1404 0.55 / 0.01 = 55 within_species_paralog: CCKAR 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p1, q15 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p2, q15 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p3, q15 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p4, q15 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p5, q15 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p6, q15 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p7, q15 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p8, q15 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p9, q15 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p10, q15 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p11, q15 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p12, q15 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p13, q15 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p14, q15 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14 p15, q15 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p16, q10 p16, q11 p16, q12 p16, q13 p16, q14 p16, q15 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p17, q10 p17, q11 p17, q12 p17, q13 p17, q14 p17, q15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 2 (region 1 for Mmul)
region2, score=14394 region2, score=14394
syntenyRegion: Macaca_mulatta.glob01.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 5 -i 17483382:21271074 -f 28e5 some_geneID_to_be_selected
scoreRatio_sum=569.92 log_scoreRatio_sum=48.1 focal_scoreRatio_sum=186.5
AlnScore=14394 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 q1 q1 907.4 5 17483382 17563975 1 4 95.8% 97.5% 1314 0.52 / 0.02 = 26 ortholog_one2one: GBA3 1
ENSP00000282947 643751 noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 q2 +/+ ENSP00000371556 PPARGC1A q2 q2 1139.9 5 18551988 18640323 -1 8 79.6% 96.7% 1926 0.88 / 0.01 = 88 ortholog_one2one: PPARGC1A 1
p4 q3 +/+ ENSP00000336741 DHX15 q3 q3 1622.4 5 19282591 19339823 -1 14 95.5% 91.3% 2490 0.67 / 0.01 = 67 ortholog_one2one: DHX15 1
p5 q4 +/+ ENSP00000226877 SOD3 q4 q4 419 5 19563083 19563760 1 1 94.2% 94.2% 678 0.79 / 0.05 = 15.8 ortholog_one2one: SOD3 1
p6 q5 +/+ ENSP00000374264 NP_775734.1 q5 q5 638.7 5 19572053 19616973 -1 6 83.4% 95.2% 1122 1 / 0.04 = 25 ortholog_one2one: NP_775734.1 1
p7 q6 +/+ ENSP00000371548 LGI2 q6 q6 959.8 5 19759308 19787734 -1 5 85.1% 93% 1503 0.48 / 0.02 = 24 ortholog_one2one: LGI2 1
p8 q7 +/+ ENSP00000351857 UGTAP_HUMAN q7 q7 1067.8 5 19882500 19918966 -1 10 100% 86.3% 1755 1 / 0.01 = 100 ortholog_one2one: UGTAP_HUMAN 1
p9 q8 +/+ ENSP00000264864 PI4K2B q8 q8 889.3 5 20000849 20036584 1 9 93.1% 93.8% 1401 0.48 / 0.06 = 8 ortholog_one2one: PI4K2B 1
p10 q9 +/+ ENSP00000303468 ZCCHC4 q9 q9 1032.6 5 20072698 20128080 1 11 91.8% 88.1% 1605 1 / 0.05 = 20 ortholog_one2one: ZCCHC4 1
p11 q10 +/+ ENSP00000371506 ANAPC4 q10 q10 1184.7 5 20135506 20176838 1 14 71.8% 88.2% 1965 1 / 0.01 = 100 ortholog_one2one: ANAPC4 1
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q11 +/+ ENSP00000371483 SLC34A2 q11 q11 1239.6 5 20438526 20453144 1 12 100% 87.5% 2190 0.6 / 0.06 = 10 ortholog_one2one: SLC34A2 1
p14 q12 +/+ ENSP00000264868 NP_056002.1 q12 q12 2080.1 5 20529370 20629064 -1 20 88.9% 91.1% 3168 1 / 0.08 = 12.5 ortholog_one2one: NP_056002.1 1
p15 q13 +/+ ENSP00000317556 Q9BRT5_HUMAN q13 q13 123 5 20696345 20696572 1 1 71.7% 88.2% 228 1 / 0.05 = 20 ortholog_one2many: ENSMMUG00000006680 2
p16 q14 +/+ ENSP00000345206 RBPSUH q14 q14 976.6 5 21190268 21214803 1 9 89.6% 95.9% 1395 0.51 / 0.01 = 51 ortholog_one2one: RBPSUH 1
p17 q15 +/+ ENSP00000295589 CCKAR q15 q15 610.5 5 21262470 21271074 -1 4 89.3% 88.5% 1170 0.55 / 0.21 = 2.62 ortholog_one2one: CCKAR 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p16, q10 p16, q11 p16, q12 p16, q13 p16, q14 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p17, q10 p17, q11 p17, q12 p17, q13 p17, q14
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 3 (region 1 for Cfam)
region3, score=12472 region3, score=12472
syntenyRegion: Canis_familiaris.glob01.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 3 -i 86831804:91875152 -f 38e5 some_geneID_to_be_selected
scoreRatio_sum=417.06 log_scoreRatio_sum=35.62 focal_scoreRatio_sum=114.98
AlnScore=12472 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 q1 q1 833 3 89906387 89978094 -1 4 95.8% 86.7% 1332 0.52 / 0.1 = 5.2 ortholog_one2one: 488857 1
ENSP00000282947 643751 noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 q2 +/+ ENSP00000371556 PPARGC1A q2 q2 1149.2 3 89013812 89106493 1 8 79.7% 92.1% 2022 0.88 / 0.01 = 88 ortholog_one2one: 479127 1
p4 q3 +/+ ENSP00000336741 DHX15 q3 q3 1547 3 88383320 88434677 1 13 92.5% 94% 2310 0.67 / 0.04 = 16.75 ortholog_one2one: 488856 1
p5 q4 +/+ ENSP00000226877 SOD3 q4 q4 254 3 88208388 88208942 -1 1 75.4% 71.9% 555 0.79 / 0.42 = 1.88 ortholog_one2one: 488855 1
p6 q5 +/+ ENSP00000374264 NP_775734.1 q5 q5 576.9 3 88150371 88199146 1 8 90.5% 76.9% 1188 1 / 0.13 = 7.69 ortholog_one2one: 488854 1
p7 q6 +/+ ENSP00000371548 LGI2 q6 q6 992.8 3 88005724 88033534 1 6 88.3% 95.2% 1485 0.48 / 0.01 = 48 ortholog_one2one: 488853 1
p8 q7 +/+ ENSP00000351857 UGTAP_HUMAN q7 q7 1012.3 3 87892799 87925401 1 10 98.2% 83.7% 1716 1 / 0.01 = 100 ortholog_one2one: 488852 1
p9 q8 +/+ ENSP00000264864 PI4K2B q8 q8 730.7 3 87807019 87822682 -1 7 73.2% 90.4% 1062 0.48 / 0.22 = 2.18 ortholog_one2one: PI4K2B 1
p10 q9 +/+ ENSP00000303468 ZCCHC4 q9 q9 822.2 3 87745046 87788190 -1 9 80.1% 84.5% 1320 1 / 0.24 = 4.17 ortholog_one2one: 479125 1
p11 q10 +/+ ENSP00000371506 ANAPC4 q10 q10 1202.1 3 87702059 87738000 -1 15 75.4% 89.1% 1926 1 / 0.01 = 100 ortholog_one2one: 479123 1
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q11 +/+ ENSP00000371483 SLC34A2 q11 q11 1031.6 3 87509527 87522666 -1 12 88% 77.9% 1980 0.6 / 0.22 = 2.73 ortholog_one2one: 488850 1
p14 q12 +/+ ENSP00000264868 NP_056002.1 q12 q12 2109.4 3 87382199 87467362 1 19 95% 84.6% 3453 1 / 0.07 = 14.29 ortholog_one2one: 488849 1
p15 --- gapq ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 q13 +/+ ENSP00000345206 RBPSUH q13 q13 947.3 3 86885621 86909185 -1 8 93.4% 87.1% 1584 0.51 / 0.03 = 17 ortholog_one2one: 479122 1
p17 q14 +/+ ENSP00000295589 CCKAR q14 q14 726.9 3 86831804 86840161 1 5 99.5% 91.4% 1287 0.55 / 0.06 = 9.17 ortholog_one2one: CCKAR_CANFA 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p1, q15 p1, q16 p1, q17 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p2, q15 p2, q16 p2, q17 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p3, q15 p3, q16 p3, q17 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p4, q15 p4, q16 p4, q17 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p5, q15 p5, q16 p5, q17 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p6, q15 p6, q16 p6, q17 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p7, q15 p7, q16 p7, q17 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p8, q15 p8, q16 p8, q17 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p9, q15 p9, q16 p9, q17 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p10, q15 p10, q16 p10, q17 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p11, q15 p11, q16 p11, q17 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p12, q15 p12, q16 p12, q17 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p13, q15 p13, q16 p13, q17 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p14, q15 p14, q16 p14, q17 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14 p15, q15 p15, q16 p15, q17 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p16, q10 p16, q11 p16, q12 p16, q13 p16, q14 p16, q15 p16, q16 p16, q17 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p17, q10 p17, q11 p17, q12 p17, q13 p17, q14 p17, q15 p17, q16 p17, q17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 4 (region 1 for Ggal)
region4, score=9840 region4, score=9840
syntenyRegion: Gallus_gallus.glob01.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 70911866:77778819 -f 52e5 some_geneID_to_be_selected
scoreRatio_sum=133.95 log_scoreRatio_sum=17.79 focal_scoreRatio_sum=59.33
AlnScore=9840 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 q1 q1 359.3 4 77004802 77011360 -1 4 83.1% 51.3% 1113 0.52 / 0.61 = 0.85 noComparaHits: 2
ENSP00000282947 643751 q17 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 q2 +/+ ENSP00000371556 PPARGC1A q2 q2 1127.4 4 76638603 76695699 1 9 83.6% 81.6% 2184 0.88 / 0.01 = 88 ortholog_one2one: Q60GU0_CHICK 1
p4 q3 +/+ ENSP00000336741 DHX15 q3 q3 1492.5 4 76226722 76266240 1 13 92.7% 89.4% 2280 0.67 / 0.08 = 8.38 ortholog_one2one: Q5F3A9_CHICK 1
p5 q4 +/+ ENSP00000226877 SOD3 q4 q4 248 4 76179564 76180238 -1 1 93.8% 51.5% 675 0.79 / 0.44 = 1.8 ortholog_one2one: 422810 1
--- q5 gapp - - - q5 - - - - - - - - - - - -
p6 q6 +/+ ENSP00000374264 NP_775734.1 q6 q6 370.6 4 76135863 76155821 1 5 51.2% 77.8% 729 1 / 0.44 = 2.27 ortholog_one2one: NP_775734.1 1
p7 q7 +/+ ENSP00000371548 LGI2 q7 q7 915.6 4 76059033 76076053 1 6 88.3% 80.1% 1659 0.48 / 0.06 = 8 ortholog_one2one: Q1EGJ7_CHICK 1
p8 q8 +/+ ENSP00000351857 UGTAP_HUMAN q8 q8 817.7 4 76012917 76033966 1 9 88.8% 71.1% 1608 1 / 0.19 = 5.26 ortholog_one2one: Q5F3Q6_CHICK 1
p9 q9 +/+ ENSP00000264864 PI4K2B q9 q9 642.3 4 75988755 76004706 -1 7 69.2% 84.5% 1005 0.48 / 0.32 = 1.5 ortholog_one2one: Q5ZIK0_CHICK 1
p10 q10 +/+ ENSP00000303468 ZCCHC4 q10 q10 609.7 4 75977534 75985955 -1 8 70.8% 70.3% 1101 1 / 0.44 = 2.27 ortholog_one2one: ZCCHC4 1
p11 q11 +/+ ENSP00000371506 ANAPC4 q11 q11 755.7 4 75960113 75975491 -1 12 56.7% 71.6% 1455 1 / 0.36 = 2.78 ortholog_one2one: Q5ZJ92_CHICK 1
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q12 +/+ ENSP00000371483 SLC34A2 q12 q12 642.6 4 75884817 75896215 -1 7 71.7% 57.4% 1560 0.6 / 0.51 = 1.18 ortholog_one2one: NP_989805.1 1
p14 q13 +/+ ENSP00000264868 NP_056002.1 q13 q13 1440.2 4 75829836 75862211 1 17 81.9% 68.4% 2823 1 / 0.36 = 2.78 ortholog_one2one: 425233 1
p15 --- gapq ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 q14 +/+ ENSP00000345206 RBPSUH q14 q14 897.4 4 75652634 75674045 -1 8 89% 88.5% 1407 0.51 / 0.08 = 6.38 ortholog_one2one: 422802 1
p17 q15 +/+ ENSP00000295589 CCKAR q15 q15 600.7 4 75631103 75635973 1 4 87.4% 78.8% 1128 0.55 / 0.22 = 2.5 ortholog_one2one: 425983 1
--- q16 gape - - - q16 - - - - - - - - - - - -
--- q17 gape - - - q17 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 5 (region 1 for Gacu)
region5, score=2680 region5, score=2680
syntenyRegion: Gasterosteus_aculeatus.glob02.contig_7166.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7166 -i 33022:92164 -f 44e3 some_geneID_to_be_selected
scoreRatio_sum=11.91 log_scoreRatio_sum=3.89 focal_scoreRatio_sum=7.18
AlnScore=2680 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000336741 DHX15 q1 q1 1412.9 contig_7166 33022 52442 -1 13 86.4% 87.4% 2238 0.67 / 0.12 = 5.58 noComparaHits: ENSGACG00000019549 1
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 q2 +/+ ENSP00000374264 NP_775734.1 q2 q2 313.8 contig_7166 65138 67345 -1 5 50.8% 61.4% 840 1 / 0.53 = 1.89 noComparaHits: ENSGACG00000019569 1
p7 q3 +/+ ENSP00000371548 LGI2 q3 q3 693.4 contig_7166 78605 81884 -1 4 78.5% 70.5% 1311 0.48 / 0.29 = 1.66 noComparaHits: ENSGACG00000019575 2
p8 q4 +/+ ENSP00000351857 UGTAP_HUMAN q4 q4 644.8 contig_7166 86229 92164 -1 7 77.2% 65.8% 1350 1 / 0.36 = 2.78 noComparaHits: ENSGACG00000019587 1
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 6 (region 2 for Gacu)
region6, score=2310 region6, score=2310
syntenyRegion: Gasterosteus_aculeatus.glob01.contig_3215.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_3215 -i 57404:78427 -f 16e3 some_geneID_to_be_selected
scoreRatio_sum=9.14 log_scoreRatio_sum=2.86 focal_scoreRatio_sum=5.88
AlnScore=2310 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000336741 DHX15 q1 q1 1356.3 contig_3215 72789 78427 1 10 86.3% 76.7% 2571 0.67 / 0.16 = 4.19 noComparaHits: ENSGACG00000017826 2
p5 q2 +/+ ENSP00000226877 SOD3 q2 q2 170 contig_3215 69697 70221 -1 1 73.3% 46.6% 525 0.79 / 0.61 = 1.3 noComparaHits: ENSGACG00000017840 1
p6 q3 +/+ ENSP00000374264 NP_775734.1 q3 q3 209.9 contig_3215 65437 67181 1 3 44.2% 51.8% 729 1 / 0.68 = 1.47 noComparaHits: ENSGACG00000017841 2
p7 q4 +/+ ENSP00000371548 LGI2 q4 q4 764.1 contig_3215 57404 61190 1 7 97.2% 61.3% 1737 0.48 / 0.22 = 2.18 noComparaHits: ENSGACG00000017845 1
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 7 (region 2 for Cfam)
region7, score=1975 region7, score=1975
syntenyRegion: Canis_familiaris.glob02.28.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 28 -i 10332102:17684755 -f 55e5 some_geneID_to_be_selected
scoreRatio_sum=6.12 log_scoreRatio_sum=1.5 focal_scoreRatio_sum=1.77
AlnScore=1975 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 356 28 10332102 10332680 -1 1 100% 95.9% 579 0.12 / 0.03 = 4 noComparaHits: ENSCAFG00000007554 ;
477771
1
p3 --- gapq ENSP00000371556 PPARGC1A q4 --- - - - - - - - - - - - -
p4 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q2 /+ ENSP00000371548 LGI2 q2 q2 500.1 28 10998772 11003203 1 3 71% 57.6% 1182 0.48 / 0.49 = 0.98 between_species_paralog: 477777 2
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 q3 +/+ ENSP00000264864 PI4K2B q3 q3 541 28 13888590 13916921 1 7 73.2% 66% 1131 0.48 / 0.42 = 1.14 between_species_paralog: 486824 2
--- q4 gapp - - - q4 - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 8 (region 2 for Ggal)
region8, score=1409 region8, score=1409
syntenyRegion: Gallus_gallus.glob03.4.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 76638603:81453652 -f 36e5 some_geneID_to_be_selected
scoreRatio_sum=88.85 log_scoreRatio_sum=4.31 focal_scoreRatio_sum=44.28
AlnScore=1409 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 q1 q1 359.3 4 77004802 77011360 -1 4 83.1% 51.3% 1113 0.52 / 0.61 = 0.85 noComparaHits: 2
ENSP00000282947 643751 noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 q2 +/+ ENSP00000371556 PPARGC1A q2 q2 1127.4 4 76638603 76695699 1 9 83.6% 81.6% 2184 0.88 / 0.01 = 88 ortholog_one2one: Q60GU0_CHICK 1
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 9 (region 2 for Mmul)
region9, score=1250 region9, score=1250
syntenyRegion: Macaca_mulatta.glob07.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 30235483:37110773 -f 52e5 some_geneID_to_be_selected
scoreRatio_sum=12.96 log_scoreRatio_sum=2.44 focal_scoreRatio_sum=4.96
AlnScore=1250 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 363 4 37110201 37110773 1 1 100% 97.4% 573 0.12 / 0.01 = 12 between_species_paralog: ENSMMUG00000029727 1
p3 --- gapq ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 q2 /+ ENSP00000336741 DHX15 q2 q2 481.4 4 30235483 30244212 -1 7 48.7% 53.7% 1263 0.67 / 0.7 = 0.96 between_species_paralog: Q5TM65_MACMU 3
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 10 (region 3 for Ggal)
region10, score=1201 region10, score=1201
syntenyRegion: Gallus_gallus.glob02.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 6 -i 21390609:29116375 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=2.98 log_scoreRatio_sum=-0.12 focal_scoreRatio_sum=0.53
AlnScore=1201 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A q3 --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371548 LGI2 q1 q1 561 6 21390609 21397686 -1 4 78.9% 54.9% 1425 0.48 / 0.42 = 1.14 between_species_paralog: Q1EGJ8_CHICK 2
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 q2 /+ ENSP00000264864 PI4K2B q2 q2 561.4 6 23732264 23737176 -1 7 73% 69.9% 1086 0.48 / 0.4 = 1.2 between_species_paralog: 425291 2
--- q3 gapp - - - q3 - - - - - - - - - - - -
p10 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 q4 /+ ENSP00000295589 CCKAR q4 q4 108 6 29115230 29116375 1 1 90.9% 26.5% 1146 0.55 / 0.86 = 0.64 noComparaHits: 428983 noData
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 11 (region 3 for Mmul)
region11, score=1185 region11, score=1185
syntenyRegion: Macaca_mulatta.glob03.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 13 -i 116019806:116877172 -f 64e4 some_geneID_to_be_selected
scoreRatio_sum=2.15 log_scoreRatio_sum=0.14 focal_scoreRatio_sum=0.62
AlnScore=1185 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 /+ ENSP00000295296 - q1 q1 134 13 116876921 116877172 1 1 100% 82.1% 252 0.18 / 0.16 = 1.13 noComparaHits: ZRANB3 3
p2 q2 /+ ENSP00000314501 GBA3 q2 q2 446.7 13 116348501 116350891 1 2 99.3% 47.3% 1368 0.52 / 0.51 = 1.02 between_species_paralog: LCT 2
ENSP00000282947 643751 noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 12 (region 4 for Mmul)
region12, score=1185 region12, score=1185
syntenyRegion: Macaca_mulatta.glob04.13.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 13 -i 116316716:124037243 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=2.15 log_scoreRatio_sum=0.14 focal_scoreRatio_sum=0.62
AlnScore=1185 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 /+ ENSP00000295296 - q1 q1 134 13 116876921 116877172 1 1 100% 82.1% 252 0.18 / 0.16 = 1.13 noComparaHits: ZRANB3 3
p2 q2 /+ ENSP00000314501 GBA3 q2 q2 446.7 13 116348501 116350891 1 2 99.3% 47.3% 1368 0.52 / 0.51 = 1.02 between_species_paralog: LCT 2
ENSP00000282947 643751 noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 13 (region 4 for Ggal)
region13, score=1117 region13, score=1117
syntenyRegion: Gallus_gallus.glob06.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 13 -i 7769298:15511284 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=2.46 log_scoreRatio_sum=-0.63 focal_scoreRatio_sum=0.36
AlnScore=1117 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 /+ ENSP00000295296 - q1 q1 126 13 15510984 15511284 1 2 88.1% 97.3% 225 0.18 / 0.21 = 0.86 ortholog_one2many: 415372 1
--- q2 gapp - - - q2 - - - - - - - - - - - -
--- q3 gapp - - - q3 - - - - - - - - - - - -
p2 --- gapq ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gapq ENSP00000371556 PPARGC1A q5 --- - - - - - - - - - - - -
p4 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q4 /+ ENSP00000371483 SLC34A2 q4 q4 499.8 13 10214059 10217285 1 5 53% 63% 1239 0.6 / 0.62 = 0.97 between_species_paralog: Q9DDR8_CHICK 2
--- q5 gapp - - - q5 - - - - - - - - - - - -
p14 --- gapq ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 q6 +/+ ENSP00000295589 CCKAR q2 q6 100 13 8209957 8210883 1 1 81.5% 26.5% 927 0.55 / 0.87 = 0.63 noComparaHits: 427623 noData
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 14 (region 2 for Hsap)
region14, score=1036 region14, score=1036
syntenyRegion: Homo_sapiens.glob09.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 11 -i 3805372:7906695 -f 31e5 some_geneID_to_be_selected
scoreRatio_sum=1.36 log_scoreRatio_sum=-1.01 focal_scoreRatio_sum=0.19
AlnScore=1036 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 246 11 3805372 3805944 -1 1 100% 59.2% 573 0.12 / 0.33 = 0.36 within_species_paralog: RHOG 6
p3 --- gapq ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 q2 /+ ENSP00000295589 CCKAR q2 q2 343.2 11 6247459 6249343 1 3 81.8% 51.3% 1026 0.55 / 0.55 = 1 within_species_paralog: CCKBR 2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 15 (region 5 for Mmul)
region15, score=1034 region15, score=1034
syntenyRegion: Macaca_mulatta.glob09.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 14 -i 63439288:69718223 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=1.34 log_scoreRatio_sum=-1.03 focal_scoreRatio_sum=0.19
AlnScore=1034 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 246 14 69717651 69718223 1 1 100% 59.7% 573 0.12 / 0.33 = 0.36 between_species_paralog: RHOG 7
p3 --- gapq ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 q2 /+ ENSP00000295589 CCKAR q2 q2 342 14 65934451 65936325 -1 3 81.3% 51.6% 1020 0.55 / 0.56 = 0.98 between_species_paralog: CCKBR 2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 16 (region 3 for Hsap)
region16, score=978 region16, score=978
syntenyRegion: Homo_sapiens.glob04.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 10 -i 93294595:99423486 -f 46e5 some_geneID_to_be_selected
scoreRatio_sum=2 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.42
AlnScore=978 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 /+ ENSP00000371548 LGI2 q1 q1 506 10 95542491 95547544 1 3 70.1% 57.8% 1179 0.48 / 0.48 = 1 within_species_paralog: LGI1 2
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 q2 +/+ ENSP00000264864 PI4K2B q2 q2 490.5 10 99390787 99423486 1 6 66.7% 68.3% 990 0.48 / 0.48 = 1 within_species_paralog: NP_060895.1 2
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 17 (region 6 for Mmul)
region17, score=975 region17, score=975
syntenyRegion: Macaca_mulatta.glob02.5.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 5 -i 10601915:17563975 -f 52e5 some_geneID_to_be_selected
scoreRatio_sum=26 log_scoreRatio_sum=3.26 focal_scoreRatio_sum=8.67
AlnScore=975 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 --- gapq ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q2 +/+ ENSP00000314501 GBA3 q2 q2 907.4 5 17483382 17563975 1 4 95.8% 97.5% 1314 0.52 / 0.02 = 26 ortholog_one2one: GBA3 1
ENSP00000282947 643751 q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 18 (region 3 for Cfam)
region18, score=927 region18, score=927
syntenyRegion: Canis_familiaris.glob06.30.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 30 -i 30747419:37604380 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.71 log_scoreRatio_sum=0.54 focal_scoreRatio_sum=0.57
AlnScore=927 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 --- gapq ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q2 +/+ ENSP00000314501 GBA3 q1 q2 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q2 342 30 36105559 36106131 -1 1 100% 92.1% 573 0.12 / 0.07 = 1.71 noComparaHits: ENSCAFG00000017518 2
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 19 (region 4 for Hsap)
region19, score=872 region19, score=872
syntenyRegion: Homo_sapiens.glob10.8.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 8 -i 144148702:145721100 -f 12e5 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.33
AlnScore=872 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 321 8 144148702 144149274 1 1 100% 86.4% 573 0.12 / 0.12 = 1 noComparaHits: 2
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 20 (region 3 for Gacu)
region20, score=831 region20, score=831
syntenyRegion: Gasterosteus_aculeatus.glob09.contig_8251.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_8251 -i 350:3359 -f 23e2 some_geneID_to_be_selected
scoreRatio_sum=3.19 log_scoreRatio_sum=1.16 focal_scoreRatio_sum=0.25
AlnScore=831 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 q1 +/+ ENSP00000345206 RBPSUH q1 q1 815.6 contig_8251 350 3359 1 7 86% 76.9% 1554 0.51 / 0.16 = 3.19 noComparaHits: ENSGACG00000015888 1
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 21 (region 7 for Mmul)
region21, score=824 region21, score=824
syntenyRegion: Macaca_mulatta.glob10.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 6 -i 169496856:173925446 -f 33e5 some_geneID_to_be_selected
scoreRatio_sum=1.21 log_scoreRatio_sum=-1.48 focal_scoreRatio_sum=0.17
AlnScore=824 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 170 6 169496856 169497302 -1 1 80.6% 66% 447 0.12 / 0.53 = 0.23 noComparaHits: noData
p3 --- gapq ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q2 +/+ ENSP00000371483 SLC34A2 q2 q2 508.6 6 173915172 173925446 1 4 60.3% 54% 1584 0.6 / 0.61 = 0.98 between_species_paralog: SLC34A1 2
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 22 (region 5 for Hsap)
region22, score=807 region22, score=807
syntenyRegion: Homo_sapiens.glob07.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 5 -i 172445326:176757770 -f 32e5 some_geneID_to_be_selected
scoreRatio_sum=1.21 log_scoreRatio_sum=-1.55 focal_scoreRatio_sum=0.17
AlnScore=807 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 159 5 172445326 172445679 -1 1 63.9% 73.8% 354 0.12 / 0.56 = 0.21 noComparaHits: NP_705835.1 noData
p3 --- gapq ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q2 +/+ ENSP00000371483 SLC34A2 q2 q2 524.1 5 176747368 176757770 1 5 56.4% 58.9% 1395 0.6 / 0.6 = 1 within_species_paralog: SLC34A1 2
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 23 (region 8 for Mmul)
region23, score=796 region23, score=796
syntenyRegion: Macaca_mulatta.glob05.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 9 -i 91040436:97259391 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=1.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.37
AlnScore=796 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 /+ ENSP00000371548 LGI2 q1 q1 502.8 9 93248727 93253440 1 3 70.1% 57.8% 1179 0.48 / 0.48 = 1 between_species_paralog: LGI1 2
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 q2 +/+ ENSP00000264864 PI4K2B q2 q2 320.8 9 97224848 97259391 1 4 47.4% 66.1% 687 0.48 / 0.66 = 0.73 noComparaHits: ENSMMUG00000030509 ;
ENSMMUG00000017997
2
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 24 (region 4 for Cfam)
region24, score=771 region24, score=771
syntenyRegion: Canis_familiaris.glob10.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 24 -i 35594021:38209292 -f 20e5 some_geneID_to_be_selected
scoreRatio_sum=1.08 log_scoreRatio_sum=-1.59 focal_scoreRatio_sum=0.14
AlnScore=771 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 /+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 184 24 38208762 38209292 -1 1 97.9% 48.1% 531 0.12 / 0.5 = 0.24 noComparaHits: 485916 noData
p3 --- gapq ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 q2 /+ ENSP00000345206 RBPSUH q2 q2 378.2 24 35594021 35598480 1 5 58% 53% 1002 0.51 / 0.61 = 0.84 between_species_paralog: 485892 2
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 25 (region 5 for Cfam)
region25, score=759 region25, score=759
syntenyRegion: Canis_familiaris.glob05.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 4 -i 35676790:40745287 -f 38e5 some_geneID_to_be_selected
scoreRatio_sum=1.26 log_scoreRatio_sum=-1.43 focal_scoreRatio_sum=0.18
AlnScore=759 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 /+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 171 4 36131427 36131870 1 1 77.5% 53.4% 444 0.12 / 0.53 = 0.23 noComparaHits: noData
--- q2 gapp - - - q2 - - - - - - - - - - - -
p3 --- gapq ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q3 /+ ENSP00000371483 SLC34A2 q3 q3 548 4 39153215 39161818 -1 6 56.7% 63% 1338 0.6 / 0.58 = 1.03 between_species_paralog: 479275 2
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR q2 --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 26 (region 6 for Hsap)
region26, score=693 region26, score=693
syntenyRegion: Homo_sapiens.glob05.4.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 4 -i 39085205:46421173 -f 55e5 some_geneID_to_be_selected
scoreRatio_sum=0.4 log_scoreRatio_sum=-0.91 focal_scoreRatio_sum=0.13
AlnScore=693 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
--- q2 gaps - - - q2 - - - - - - - - - - - -
p1 --- gapq ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q3 +/+ ENSP00000314501 GBA3 q1 q3 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q3 256 4 46420607 46421173 -1 1 98.4% 66.7% 567 0.12 / 0.3 = 0.4 within_species_paralog: ENSG00000172895 4
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 27 (region 6 for Cfam)
region27, score=672 region27, score=672
syntenyRegion: Canis_familiaris.glob09.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 16 -i 43859134:49953670 -f 46e5 some_geneID_to_be_selected
scoreRatio_sum=0.38 log_scoreRatio_sum=-0.96 focal_scoreRatio_sum=0.13
AlnScore=672 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 247.6 16 43859134 43859680 -1 2 75.9% 87.6% 435 0.12 / 0.32 = 0.38 noComparaHits: PDGFRL 5
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 28 (region 5 for Ggal)
region28, score=671 region28, score=671
syntenyRegion: Gallus_gallus.glob07.4.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 2233591:9987293 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=0.38 log_scoreRatio_sum=-0.96 focal_scoreRatio_sum=0.13
AlnScore=671 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 noMatch q1 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q1 247 4 2233591 2234163 -1 1 100% 60.2% 573 0.12 / 0.32 = 0.38 between_species_paralog: Q5ZMG8_CHICK 1
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 29 (region 7 for Hsap)
region29, score=656 region29, score=656
syntenyRegion: Homo_sapiens.glob02.2.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 2 -i 130686979:136589838 -f 44e5 some_geneID_to_be_selected
scoreRatio_sum=0.36 log_scoreRatio_sum=-1.01 focal_scoreRatio_sum=0.12
AlnScore=656 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 --- gapq ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q2 +/+ ENSP00000314501 GBA3 q1 q2 NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
ENSP00000282947 643751 q2 246 2 131935069 131935596 1 1 92.1% 66.5% 528 0.12 / 0.33 = 0.36 within_species_paralog: ENSG00000173284 6
--- q3 gapp - - - q3 - - - - - - - - - - - -
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 30 (region 6 for Ggal)
region30, score=571 region30, score=571
syntenyRegion: Gallus_gallus.glob04.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 6 -i 18936079:21397686 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=1.14 log_scoreRatio_sum=0.13 focal_scoreRatio_sum=0.28
AlnScore=571 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371548 LGI2 q1 q1 561 6 21390609 21397686 -1 4 78.9% 54.9% 1425 0.48 / 0.42 = 1.14 between_species_paralog: Q1EGJ8_CHICK 2
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 31 (region 4 for Gacu)
region31, score=512 region31, score=512
syntenyRegion: Gasterosteus_aculeatus.glob05.contig_7157.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7157 -i 100785:103442 -f 20e2 some_geneID_to_be_selected
scoreRatio_sum=1.08 log_scoreRatio_sum=0.08 focal_scoreRatio_sum=0.36
AlnScore=512 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 q1 q1 476.3 contig_7157 100785 103442 1 3 95.8% 49.7% 1419 0.52 / 0.48 = 1.08 noComparaHits: ENSGACG00000019544 1
ENSP00000282947 643751 noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 32 (region 7 for Ggal)
region32, score=487 region32, score=487
syntenyRegion: Gallus_gallus.glob05.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 7 -i 27095570:32378153 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=1.02 log_scoreRatio_sum=0.02 focal_scoreRatio_sum=0.34
AlnScore=487 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 q1 q1 452.5 7 32267666 32269340 -1 2 99.1% 47.9% 1374 0.52 / 0.51 = 1.02 between_species_paralog: P70072_CHICK 1
ENSP00000282947 643751 noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 33 (region 5 for Gacu)
region33, score=476 region33, score=476
syntenyRegion: Gasterosteus_aculeatus.glob08.contig_1837.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1837 -i 3054:4810 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.23
AlnScore=476 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371548 LGI2 q1 q1 468.1 contig_1837 3054 4810 1 4 74.5% 46.6% 1338 0.48 / 0.52 = 0.92 noComparaHits: ENSGACG00000012399 4
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 34 (region 6 for Gacu)
region34, score=472 region34, score=472
syntenyRegion: Gasterosteus_aculeatus.glob06.contig_5107.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5107 -i 2906:4322 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.23
AlnScore=472 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371548 LGI2 q1 q1 464 contig_5107 2906 4322 1 2 70.1% 50% 1302 0.48 / 0.52 = 0.92 noComparaHits: ENSGACG00000008101 5
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 35 (region 7 for Cfam)
region35, score=467 region35, score=467
syntenyRegion: Canis_familiaris.glob07.25.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 25 -i 33684082:38093740 -f 33e5 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.23
AlnScore=467 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371548 LGI2 q1 q1 458.6 25 38090017 38093740 1 3 70.1% 50.1% 1155 0.48 / 0.53 = 0.91 between_species_paralog: 486128 3
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 36 (region 8 for Hsap)
region36, score=466 region36, score=466
syntenyRegion: Homo_sapiens.glob06.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 8 -i 22061624:26778364 -f 35e5 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.23
AlnScore=466 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371548 LGI2 q1 q1 458.4 8 22061624 22065457 -1 3 70.1% 50.5% 1152 0.48 / 0.53 = 0.91 within_species_paralog: LGI3 3
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 37 (region 9 for Mmul)
region37, score=465 region37, score=465
syntenyRegion: Macaca_mulatta.glob08.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 8 -i 22071483:27018409 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.23
AlnScore=465 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371548 LGI2 q1 q1 457.4 8 22071483 22075505 -1 3 70.1% 50.5% 1152 0.48 / 0.53 = 0.91 between_species_paralog: LGI3 3
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 38 (region 9 for Hsap)
region38, score=461 region38, score=461
syntenyRegion: Homo_sapiens.glob03.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 9 -i 37626805:44413360 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.08
AlnScore=461 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
--- q2 gapp - - - q2 - - - - - - - - - - - -
p16 q3 +/+ ENSP00000345206 RBPSUH q3 q3 472 9 41874816 41875615 -1 2 53.2% 85.3% 798 0.51 / 0.51 = 1 noComparaHits: 3
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 39 (region 8 for Cfam)
region39, score=453 region39, score=453
syntenyRegion: Canis_familiaris.glob04.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 19 -i 38405151:41894732 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=0.96 log_scoreRatio_sum=-0.03 focal_scoreRatio_sum=0.32
AlnScore=453 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 q1 +/+ ENSP00000314501 GBA3 q1 q1 421.2 19 41610174 41612333 -1 2 99.3% 45.6% 1365 0.52 / 0.54 = 0.96 between_species_paralog: 483898 2
ENSP00000282947 643751 noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
p3 --- gape ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17

region 40 (region 7 for Gacu)
region40, score=448 region40, score=448
syntenyRegion: Gasterosteus_aculeatus.glob10.contig_5895.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5895 -i 57274:85232 -f 21e3 some_geneID_to_be_selected
scoreRatio_sum=1.52 log_scoreRatio_sum=-0.56 focal_scoreRatio_sum=0.13
AlnScore=448 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000295296 - noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
ENSP00000282947 643751 noMatch - - - - - - - - - - - -
p3 --- gaps ENSP00000371556 PPARGC1A noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000226877 SOD3 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000374264 NP_775734.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000351857 UGTAP_HUMAN noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000371506 ANAPC4 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000308272 P78389_HUMAN noMatch --- - - - - - - - - - - - -
p13 q1 +/+ ENSP00000371483 SLC34A2 q1 q1 421.5 contig_5895 57274 61900 1 5 46.4% 60.6% 1044 0.6 / 0.68 = 0.88 noComparaHits: ENSGACG00000018036 2
p14 --- gapq ENSP00000264868 NP_056002.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000317556 Q9BRT5_HUMAN noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000345206 RBPSUH noMatch --- - - - - - - - - - - - -
p17 q2 +/+ ENSP00000295589 CCKAR q2 q2 107 contig_5895 84102 85232 -1 1 78.7% 24.9% 1131 0.55 / 0.86 = 0.64 noComparaHits: ENSGACG00000018040 noData
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10