Overview on processed synteny regions for C4_CDX1_ENSG00000113722_1e6.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=2550255025.635.273.27Danio_rerio21
2region2, score=179617969.990.790.86Danio_rerio14
3region3, score=6706702.420.320.53Danio_rerioZv7_NA3207
4region4, score=110711072.310.181.16Danio_rerio21 43615612 43626244 2 81.1% 46.1% 1 172 ortholog_one2one: CDX1
5region5, score=118311832.10.10.28Danio_rerio21
6region6, score=151415144.10.030.48Danio_rerio14
7region7, score=9919911.93-0.060.36Danio_rerio1
8region8, score=3613610.86-0.140.43Danio_rerio20
9region9, score=117311731.77-0.240.19Danio_rerio12
10region10, score=1081080.69-0.360.17Danio_rerio6
11region11, score=8468461.63-0.411.19Danio_rerio14 25691140 25714598 3 84.9% 45.8% -1 163 noComparaHits: cdx1a
12region12, score=4724720.56-0.570.07Danio_rerio12
13region13, score=4394391.48-0.60.54Danio_rerio24
14region14, score=200620062.46-0.880.54Danio_rerio13
15region15, score=5895891.28-0.890.93Danio_rerio16 15953566 15954702 2 58.9% 37.6% -1 105.1 noComparaHits: hoxa2b
16region16, score=2362360.38-0.960.05Danio_rerio9
17region17, score=9359352.11-1.130.56Danio_rerio6
18region18, score=134913492.12-1.440.79Danio_rerio5
19region19, score=1791790.09-2.40.03Danio_rerio16
20region20, score=3523521.06-2.430.13Danio_rerio1
21region21, score=5835830.08-2.520.01Danio_rerio12
22region22, score=8158152-2.60.59Danio_rerio7
23region23, score=3313310.79-2.750.21Danio_rerio18
24region24, score=2542540.78-2.770.2Danio_rerio5
25region25, score=6066060.76-2.80.09Danio_rerio8
26region26, score=6176170.76-2.80.09Danio_rerio2
27region27, score=4784780.06-2.80Danio_rerio4
28region28, score=4734730.06-2.80Danio_rerioZv7_NA1102
29region29, score=2642640.69-2.910.33Danio_rerio23
30region30, score=4014010.05-2.990Danio_rerio13
31region31, score=4074070.05-2.990Danio_rerio7
32region32, score=4354350.05-2.990Danio_rerio4
33region33, score=4324320.05-2.990Danio_rerio1
34region34, score=9169161.67-3.040.82Danio_rerio2
35region35, score=6056050.75-3.170.18Danio_rerio16
36region36, score=6646640.87-3.180.12Danio_rerio4
37region37, score=9409401.95-3.310.7Danio_rerio20
38region38, score=5305300.65-3.330.3Danio_rerio2
39region39, score=4644640.73-3.370.17Danio_rerio22
40region40, score=4444440.73-3.370.17Danio_rerio15
41region41, score=9539531.84-3.441.23Danio_rerio14 37387109 37389654 3 93.2% 48.1% -1 215.1 between_species_paralog: cdx4
42region42, score=223822382.43-3.570.54Danio_rerio7
43region43, score=2812810.65-3.70.31Danio_rerio17
44region44, score=4984981.14-3.70.35Danio_rerio11
45region45, score=5715711.32-3.730.47Danio_rerio2
46region46, score=7267261.53-3.80.48Danio_rerio8
47region47, score=3283281.32-4.110.47Danio_rerio10
48region48, score=3393390.39-4.260.05Danio_rerio13
49region49, score=3833830.37-4.320.04Danio_rerio13
50region50, score=7027020.16-5.110.04Danio_rerio4
51region51, score=7817810.15-5.210.03Danio_rerio20
52region52, score=6286280.15-5.210.03Danio_rerio25
53region53, score=107210721.02-5.260.47Danio_rerio15
54region54, score=5145140.14-5.390.03Danio_rerio16
55region55, score=5595590.13-5.510.03Danio_rerio6
56region56, score=3363360.13-5.620.03Danio_rerio24
57region57, score=3783780.13-5.620.03Danio_rerio2
58region58, score=3423420.12-5.730.03Danio_rerio17
59region59, score=5415410.84-5.870.21Danio_rerio22
60region60, score=5175170.83-5.970.21Danio_rerio20

Data table for reference protein loci

QueryProtein(s)=ENSP00000231656 (contained in p13)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 IL17B ENSP00000261796 ENST00000261796 ENSG00000127743 IL17B_HUMAN 5 148734125 148738981 148736527 -1 3 180 359.5
p2 CSNK1A1 ENSP00000261798 ENST00000261798 ENSG00000113712 NM_001025105.1 5 148855433 148855933 148855679 -1 1 166 282.8
p3 CSNK1A1 ENSP00000367072 ENST00000377841 ENSG00000113712 NP_001020276.1 5 148865198 148910720 148872954 -1 10 364 732.8
p4 NP_001001669.2 ENSP00000374676 ENST00000390026 ENSG00000183111 NP_001001669.2 5 148976294 148991944 148981708 1 9 532 1030.5
p5 PPARGC1B ENSP00000312649 ENST00000309241 ENSG00000155846 PRGC2_HUMAN 5 149090099 149207314 149193360 1 12 1023 1836.5
p6 PDE6A ENSP00000255266 ENST00000255266 ENSG00000132915 PDE6A_HUMAN 5 149220651 149304429 149258230 -1 22 860 1695.2
p7 SLC26A2 ENSP00000286298 ENST00000286298 ENSG00000155850 S26A2_HUMAN 5 149337409 149341569 149340454 1 2 739 1343.9
p8 TIGD6 ENSP00000296736 ENST00000296736 ENSG00000164296 TIGD6_HUMAN 5 149354539 149356104 149355316 -1 1 521 959.7
p9 SMF_HUMAN ENSP00000261804 ENST00000261804 ENSG00000113716 SMF_HUMAN 5 149360491 149411948 149386850 1 20 1441 2757.4
p10 CSF1R ENSP00000286301 ENST00000286301 ENSG00000182578 CSF1R_HUMAN 5 149413825 149446183 149429675 -1 21 972 1829.6
p11 O95036_HUMAN ENSP00000305052 ENST00000305796 ENSG00000169216 O95036_HUMAN 5 149454058 149454804 149454427 1 1 248 478.4
p12 PDGFRB ENSP00000261799 ENST00000261799 ENSG00000113721 PGFRB_HUMAN 5 149475519 149496803 149486285 -1 22 1106 2146.8
p13 CDX1 ENSP00000231656 ENST00000231656 ENSG00000113722 CDX1_HUMAN 5 149526633 149543436 149527026 1 3 265 349.4
p14 SLC6A7 ENSP00000230671 ENST00000230671 ENSG00000011083 SC6A7_HUMAN 5 149550084 149569371 149562196 1 14 636 1277.7
p15 CAMK2A ENSP00000305090 ENST00000351010 ENSG00000070808 Q9UQM7-2 5 149582741 149649381 149610519 -1 18 489 930.4
p16 ARSI ENSP00000333395 ENST00000328668 ENSG00000183876 ARSI_HUMAN 5 149656970 149662129 149657819 -1 2 569 1109.1
p17 TCOF1 ENSP00000314349 ENST00000323753 ENSG00000070814 Q13428-5 5 149717503 149758804 149736209 1 26 1451 787.5
p18 CD74 ENSP00000009530 ENST00000009530 ENSG00000019582 HG2A_HUMAN 5 149762254 149772505 149764931 -1 9 296 607.8
p19 RPS14 ENSP00000311028 ENST00000312037 ENSG00000164587 RS14_HUMAN 5 149804042 149807489 149806635 -1 4 151 296.2
p20 NDST1 ENSP00000261797 ENST00000261797 ENSG00000070614 P52848-2 5 149881010 149913087 149895527 1 15 884 1757.2
p21 SYNPO ENSP00000315289 ENST00000314840 ENSG00000171992 SYNPO_HUMAN 5 149978123 150010088 150008688 1 2 929 1712.2
p22 MYOZ3 ENSP00000297130 ENST00000297130 ENSG00000164591 MYOZ3_HUMAN 5 150022697 150036630 150031612 1 6 251 368.4
Q96MU4_HUMAN ENSP00000314547 ENST00000326726 ENSG00000177512 Q96MU4_HUMAN 5 150031542 150031964 150031749 -1 1 140 286
p23 RBM22 ENSP00000199814 ENST00000199814 ENSG00000086589 - 5 150051506 150060740 150055371 -1 12 420 849
p24 DCTN4 ENSP00000255263 ENST00000255263 ENSG00000132912 DCTN4_HUMAN 5 150070904 150118748 150090827 -1 13 460 935.1
p25 NM_032947.3 ENSP00000322424 ENST00000324552 ENSG00000181368 NM_032947.3 5 150155731 150155961 150155842 1 1 76 137.8
p26 - ENSP00000367002 ENST00000377771 ENSG00000204891 - 5 150208381 150260369 150237826 1 4 83 149.6
ZNF300 ENSP00000274599 ENST00000274599 ENSG00000145908 ZN300_HUMAN 5 150255179 150262910 150256082 -1 4 604 556.6
p27 GPX3 ENSP00000373477 ENST00000388825 ENSG00000211445 GPX3_HUMAN 5 150380409 150387884 150386749 1 5 226 448.3
p28 GPX3 ENSP00000373478 ENST00000388826 ENSG00000211445 - 5 150388017 150388352 150388179 1 1 111 226.8
total length of ref-loci (on slice) = 1654228 (17e5)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5 p27, q6 p28 p28, q1 p28, q2 p28, q3 p28, q4 p28, q5 p28, q6
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5 p27, q6 p28 p28, q1 p28, q2 p28, q3 p28, q4 p28, q5 p28, q6
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 1
region1, score=2550 region1, score=2550 region1, score=2550
syntenyRegion: Danio_rerio.glob04.21.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 33607131:36894679 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=25.63 log_scoreRatio_sum=5.27 focal_scoreRatio_sum=3.27
AlnScore=2550 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000286301 CSF1R q5 --- - - - - - - - - - - - -
p11 --- gaps ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000261799 PDGFRB q5 --- - - - - - - - - - - - -
p13 --- gaps ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000305090 CAMK2A q6 --- - - - - - - - - - - - -
p16 --- gaps ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 q1 +/+ ENSP00000311028 RPS14 q1 q1 295.2 21 36367191 36370327 1 4 100% 93.4% 489 0.17 / 0.01 = 17 ortholog_one2one: rps14 1
p20 q2 /+ ENSP00000261797 NDST1 q2 q2 1458.5 21 36292375 36356206 1 14 99.7% 77.6% 2826 0.26 / 0.16 = 1.63 noComparaHits: 1
p21 --- gapq ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000297130 MYOZ3 q4 --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 q3 /+ ENSP00000199814 RBM22 q3 q3 775.2 21 36136115 36153894 -1 11 99.5% 79.8% 1383 0.56 / 0.08 = 7 ortholog_one2one: rbm22 1
p24 --- gapq ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gapq ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gapq ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gapq ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
--- q4 gape - - - q4 - - - - - - - - - - - -
--- q5 gape - - - q5 - - - - - - - - - - - -
--- q6 gape - - - q6 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5 p27, q6 p28 p28, q1 p28, q2 p28, q3 p28, q4 p28, q5 p28, q6
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5 p27, q6 p28 p28, q1 p28, q2 p28, q3 p28, q4 p28, q5 p28, q6
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 2
region2, score=1796 region2, score=1796 region2, score=1796
syntenyRegion: Danio_rerio.glob05.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 53186909:56477193 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=9.99 log_scoreRatio_sum=0.79 focal_scoreRatio_sum=0.86
AlnScore=1796 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000009530 CD74 q3 --- - - - - - - - - - - - -
p19 --- gaps ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p20 q2 /+ ENSP00000261797 NDST1 q2 q2 471.9 14 55669371 55674615 1 4 40.7% 68.1% 1086 0.26 / 0.73 = 0.36 noComparaHits: 6
--- q3 gapp - - - q3 - - - - - - - - - - - -
p21 q4 +/+ ENSP00000315289 SYNPO q4 q4 225.1 14 53956489 53957736 -1 1 43.8% 41% 1248 0.91 / 0.86 = 1.06 noComparaHits: 1
p22 --- gapq ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gapq ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 q5 +/+ ENSP00000255263 DCTN4 q5 q5 817.5 14 53631920 53657995 1 13 99.1% 82.4% 1458 0.94 / 0.12 = 7.83 ortholog_one2one: zgc:112431 1
p25 --- gapq ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 q1 - - - - - - - - - - - -
p27 q6 +/+ ENSP00000373477 GPX3 q6 q6 259.2 14 53613423 53620174 -1 4 82.3% 65.3% 567 0.31 / 0.42 = 0.74 ortholog_one2many: XR_029493.1 1
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2 p28 p28, q1 p28, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2 p28 p28, q1 p28, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 3
region3, score=670 region3, score=670 region3, score=670
syntenyRegion: Danio_rerio.glob47.Zv7_NA3207.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3207 -i 8346:84661 -f 57e3 some_geneID_to_be_selected
scoreRatio_sum=2.42 log_scoreRatio_sum=0.32 focal_scoreRatio_sum=0.53
AlnScore=670 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 q1 +/+ ENSP00000261804 SMF_HUMAN q1 q1 944.4 Zv7_NA3207 8346 32101 1 15 64.1% 49.7% 2886 0.98 / 0.65 = 1.51 noComparaHits: 1
p10 q2 +/+ ENSP00000286301 CSF1R q2 q2 600.8 Zv7_NA3207 40185 66470 -1 12 58.7% 51.1% 1803 0.61 / 0.67 = 0.91 noComparaHits: LOC100008185 4
p11 --- gape ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000261799 PDGFRB q2 --- - - - - - - - - - - - -
p13 --- gape ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3 p27 p27, q1 p27, q2 p27, q3 p28 p28, q1 p28, q2 p28, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3 p27 p27, q1 p27, q2 p27, q3 p28 p28, q1 p28, q2 p28, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 4
region4, score=1107 region4, score=1107 region4, score=1107
syntenyRegion: Danio_rerio.glob06.21.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 41625756:44754339 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=2.31 log_scoreRatio_sum=0.18 focal_scoreRatio_sum=1.16
AlnScore=1107 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p13 q2 /+ ENSP00000231656 CDX1 q2 q2 172 21 43615612 43626244 1 2 81.1% 46.1% 627 0.39 / 0.5 = 0.78 ortholog_one2one: CDX1 2
p14 --- gapq ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 q3 +/+ ENSP00000333395 ARSI q3 q3 752.9 21 43604149 43607814 1 2 93.7% 68.1% 1629 0.49 / 0.32 = 1.53 ortholog_one2one: LOC563783 1
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5 p28 p28, q1 p28, q2 p28, q3 p28, q4 p28, q5
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5 p28 p28, q1 p28, q2 p28, q3 p28, q4 p28, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 5
region5, score=1183 region5, score=1183 region5, score=1183
syntenyRegion: Danio_rerio.glob03.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 10606765:13715415 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=2.1 log_scoreRatio_sum=0.1 focal_scoreRatio_sum=0.28
AlnScore=1183 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
--- q2 gaps - - - q2 - - - - - - - - - - - -
p1 --- gapq ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gapq ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 q3 +/+ ENSP00000255266 PDE6A q3 q3 1194.4 21 12031344 12045552 -1 19 93.5% 68.8% 2577 0.29 / 0.29 = 1 between_species_paralog: LOC100000610 2
p7 q4 +/+ ENSP00000286298 SLC26A2 q4 q4 671.2 21 12074135 12077301 1 2 90% 52.9% 2046 0.55 / 0.5 = 1.1 between_species_paralog: zgc:158435 1
--- q5 gapp - - - q5 - - - - - - - - - - - -
p8 --- gape ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A q1 --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 q2 - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4 p28 p28, q1 p28, q2 p28, q3 p28, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4 p28 p28, q1 p28, q2 p28, q3 p28, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 6
region6, score=1514 region6, score=1514 region6, score=1514
syntenyRegion: Danio_rerio.glob07.14.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 20240627:23413232 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=4.1 log_scoreRatio_sum=0.03 focal_scoreRatio_sum=0.48
AlnScore=1514 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000374676 NP_001001669.2 q1 q1 384.9 14 21864174 21884205 1 7 74.8% 47.2% 1206 0.75 / 0.62 = 1.21 ortholog_one2one: LOC793242 1
p5 q2 +/+ ENSP00000312649 PPARGC1B q2 q2 318.9 14 22016664 22040479 1 7 51.2% 38.5% 1557 0.81 / 0.82 = 0.99 between_species_paralog: ppargc1b 2
p6 q3 +/+ ENSP00000255266 PDE6A q3 q3 1255 14 22051678 22077450 -1 19 95.1% 71.3% 2607 0.29 / 0.25 = 1.16 ortholog_one2one: pde6a 1
p7 q4 /+ ENSP00000286298 SLC26A2 q4 q4 341.6 14 22485152 22486327 -1 1 53.5% 54% 1176 0.55 / 0.74 = 0.74 ortholog_one2one: LOC557046 9
p8 --- gape ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2 p28 p28, q1 p28, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2 p28 p28, q1 p28, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 7
region7, score=991 region7, score=991 region7, score=991
syntenyRegion: Danio_rerio.glob09.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 14475691:17001220 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=1.93 log_scoreRatio_sum=-0.06 focal_scoreRatio_sum=0.36
AlnScore=991 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 q1 +/+ ENSP00000286301 CSF1R q1 q1 661.9 1 15354847 15381590 -1 15 67% 47.1% 2121 0.61 / 0.63 = 0.97 noComparaHits: kitb 2
p11 --- gapq ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000261799 PDGFRB q1 --- - - - - - - - - - - - -
p13 --- gapq ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 q2 /+ ENSP00000261797 NDST1 q2 q2 1266.5 1 16148506 16272141 -1 13 96.6% 70.5% 2610 0.26 / 0.27 = 0.96 noComparaHits: 2
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1 p28 p28, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1 p28 p28, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 8
region8, score=361 region8, score=361 region8, score=361
syntenyRegion: Danio_rerio.glob40.20.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 22717850:26021989 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=0.86 log_scoreRatio_sum=-0.14 focal_scoreRatio_sum=0.43
AlnScore=361 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000286301 CSF1R q1 --- - - - - - - - - - - - -
p11 --- gaps ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 q1 +/+ ENSP00000261799 PDGFRB q1 q1 777.1 20 23258130 23282937 1 17 76.9% 44% 2739 0.54 / 0.63 = 0.86 noComparaHits: pdgfra 3
p13 --- gape ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4 p28 p28, q1 p28, q2 p28, q3 p28, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4 p28 p28, q1 p28, q2 p28, q3 p28, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 9
region9, score=1173 region9, score=1173 region9, score=1173
syntenyRegion: Danio_rerio.glob08.12.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 29308252:32600676 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=1.77 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.19
AlnScore=1173 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 --- gapq ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gapq ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 q2 /+ ENSP00000367072 CSNK1A1 q2 q2 414.8 12 30510654 30519536 1 6 72% 72.6% 837 0.36 / 0.43 = 0.84 between_species_paralog: csnk1d 4
p4 --- gapq ENSP00000374676 NP_001001669.2 q1 --- - - - - - - - - - - - -
p5 --- gapq ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000305090 CAMK2A q4 --- - - - - - - - - - - - -
p16 --- gapq ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 q3 +/+ ENSP00000261797 NDST1 q3 q3 1248.6 12 32566145 32588476 1 13 99.7% 65.4% 2814 0.26 / 0.28 = 0.93 between_species_paralog: LOC562571 3
--- q4 gapp - - - q4 - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1 p28 p28, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1 p28 p28, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 10
region10, score=108 region10, score=108 region10, score=108
syntenyRegion: Danio_rerio.glob38.6.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 15297565:18347025 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=0.69 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=0.17
AlnScore=108 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 q1 +/+ ENSP00000286301 CSF1R q1 q1 198.4 6 17037364 17099696 -1 4 34.8% 34.7% 981 0.61 / 0.89 = 0.69 noComparaHits: si:dkey-209n16.1 noData
p11 --- gape ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000261799 PDGFRB q1 --- - - - - - - - - - - - -
p13 --- gape ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2 p28 p28, q1 p28, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2 p28 p28, q1 p28, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 11
region11, score=846 region11, score=846 region11, score=846
syntenyRegion: Danio_rerio.glob58.14.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 23887512:26213113 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=1.63 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=1.19
AlnScore=846 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000286301 CSF1R q1 --- - - - - - - - - - - - -
p11 --- gaps ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 q1 +/+ ENSP00000261799 PDGFRB q1 q1 816.9 14 25776493 25805955 1 15 68.5% 52.7% 2355 0.54 / 0.61 = 0.89 noComparaHits: pdgfrb2 2
p13 q2 +/+ ENSP00000231656 CDX1 q2 q2 163 14 25691140 25714598 -1 3 84.9% 45.8% 627 0.39 / 0.53 = 0.74 noComparaHits: cdx1a 3
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1 p28 p28, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1 p28 p28, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 12
region12, score=472 region12, score=472 region12, score=472
syntenyRegion: Danio_rerio.glob50.12.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 92898:3321213 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.56 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.07
AlnScore=472 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000255266 PDE6A q1 q1 800.8 12 3239252 3259827 1 14 93.7% 46.7% 2601 0.29 / 0.52 = 0.56 between_species_paralog: pde6c 3
p7 --- gape ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2 p28 p28, q1 p28, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2 p28 p28, q1 p28, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 13
region13, score=439 region13, score=439 region13, score=439
syntenyRegion: Danio_rerio.glob53.24.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 20007287:22410837 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=1.48 log_scoreRatio_sum=-0.6 focal_scoreRatio_sum=0.54
AlnScore=439 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 q1 +/+ ENSP00000286301 CSF1R q1 q1 436.8 24 20280840 20300118 -1 10 35.4% 55.1% 1080 0.61 / 0.76 = 0.8 noComparaHits: ENSDARG00000058503 7
p11 --- gapq ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 q2 +/+ ENSP00000261799 PDGFRB q2 q2 437.9 24 20343895 20387531 -1 12 42.7% 43.7% 1467 0.54 / 0.79 = 0.68 noComparaHits: flt1 7
p13 --- gape ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3 p27 p27, q1 p27, q2 p27, q3 p28 p28, q1 p28, q2 p28, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3 p27 p27, q1 p27, q2 p27, q3 p28 p28, q1 p28, q2 p28, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 14
region14, score=2006 region14, score=2006 region14, score=2006
syntenyRegion: Danio_rerio.glob01.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 23881065:27175667 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=2.46 log_scoreRatio_sum=-0.88 focal_scoreRatio_sum=0.54
AlnScore=2006 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 q1 +/+ ENSP00000305090 CAMK2A q1 q1 754.7 13 26917017 27035446 -1 13 84% 82.9% 1308 0.07 / 0.18 = 0.39 noComparaHits: LOC793359 6
p16 q2 +/+ ENSP00000333395 ARSI q2 q2 632.6 13 27048346 27050689 -1 3 91.2% 59.6% 1611 0.49 / 0.42 = 1.17 noComparaHits: 2
p17 --- gapq ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 q3 /+ ENSP00000261797 NDST1 q3 q3 1233.4 13 27060494 27090114 -1 12 94.3% 69.9% 2613 0.26 / 0.29 = 0.9 noComparaHits: 4
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4 p28 p28, q1 p28, q2 p28, q3 p28, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4 p28 p28, q1 p28, q2 p28, q3 p28, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 15
region15, score=589 region15, score=589 region15, score=589
syntenyRegion: Danio_rerio.glob51.16.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 12706227:15986938 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=1.28 log_scoreRatio_sum=-0.89 focal_scoreRatio_sum=0.93
AlnScore=589 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A q2 --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 q1 +/+ ENSP00000231656 CDX1 q1 q1 105.1 16 15953566 15954702 -1 2 58.9% 37.6% 492 0.39 / 0.69 = 0.57 noComparaHits: hoxa2b 4
--- q2 gapp - - - q2 - - - - - - - - - - - -
p14 q3 +/+ ENSP00000230671 SLC6A7 q3 q3 395 16 14391224 14413159 -1 9 64% 42.1% 1251 0.49 / 0.69 = 0.71 between_species_paralog: slc6a19 noData
--- q4 gapp - - - q4 - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1 p28 p28, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1 p28 p28, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 16
region16, score=236 region16, score=236 region16, score=236
syntenyRegion: Danio_rerio.glob43.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 1373801:4114518 -f 21e5 some_geneID_to_be_selected
scoreRatio_sum=0.38 log_scoreRatio_sum=-0.96 focal_scoreRatio_sum=0.05
AlnScore=236 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000255266 PDE6A q1 q1 401 9 1486139 1554785 1 11 51% 41.7% 1326 0.29 / 0.76 = 0.38 between_species_paralog: LOC561338 6
p7 --- gape ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000230671 SLC6A7 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5 p27, q6 p27, q7 p28 p28, q1 p28, q2 p28, q3 p28, q4 p28, q5 p28, q6 p28, q7
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5 p27, q6 p27, q7 p28 p28, q1 p28, q2 p28, q3 p28, q4 p28, q5 p28, q6 p28, q7
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 17
region17, score=935 region17, score=935 region17, score=935
syntenyRegion: Danio_rerio.glob35.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 26290873:29426364 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=2.11 log_scoreRatio_sum=-1.13 focal_scoreRatio_sum=0.56
AlnScore=935 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p7 q2 +/+ ENSP00000286298 SLC26A2 q2 q2 418.9 6 27577421 27583948 1 11 57.4% 42.8% 1314 0.55 / 0.68 = 0.81 between_species_paralog: LOC559448 4
--- q3 gapp - - - q3 - - - - - - - - - - - -
p8 --- gapq ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000261799 PDGFRB q7 --- - - - - - - - - - - - -
p13 --- gapq ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 q4 /+ ENSP00000230671 SLC6A7 q4 q4 499.8 6 27973220 27988552 -1 11 76.3% 43.2% 1605 0.49 / 0.6 = 0.82 between_species_paralog: slc6a13 noData
--- q5 gapp - - - q5 - - - - - - - - - - - -
p15 --- gapq ENSP00000305090 CAMK2A noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000261797 NDST1 noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gapq ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gapq ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gapq ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 q3 - - - - - - - - - - - -
p27 q6 +/+ ENSP00000373477 GPX3 q6 q6 152.7 6 29193011 29195628 1 2 80.1% 47.4% 561 0.31 / 0.65 = 0.48 noComparaHits: gpx1b 3
p28 --- gapq ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -
--- q7 gape - - - q7 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3 p27 p27, q1 p27, q2 p27, q3 p28 p28, q1 p28, q2 p28, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3 p27 p27, q1 p27, q2 p27, q3 p28 p28, q1 p28, q2 p28, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27 p28

region 18
region18, score=1349 region18, score=1349 region18, score=1349
syntenyRegion: Danio_rerio.glob27.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 16247629:19538396 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=2.12 log_scoreRatio_sum=-1.44 focal_scoreRatio_sum=0.79
AlnScore=1349 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000261796 IL17B noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000261798 CSNK1A1 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000367072 CSNK1A1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000374676 NP_001001669.2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000312649 PPARGC1B noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000255266 PDE6A noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000286298 SLC26A2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000296736 TIGD6 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000261804 SMF_HUMAN noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000286301 CSF1R noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000305052 O95036_HUMAN noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000261799 PDGFRB noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000231656 CDX1 noMatch --- - - - - - - - - - - - -
p14 q1 /+ ENSP00000230671 SLC6A7 q1 q1 524.3 5 16328699 16354055 -1 11 77.4% 48.5% 1590 0.49 / 0.58 = 0.84 between_species_paralog: si:ch211-225b11.1 9
p15 q2 +/+ ENSP00000305090 CAMK2A q2 q2 861 5 16477231 16570599 -1 16 93.9% 83% 1488 0.07 / 0.07 = 1 noComparaHits: A2BGW3_DANRE 1
p16 --- gapq ENSP00000333395 ARSI noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000314349 TCOF1 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000009530 CD74 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000311028 RPS14 noMatch --- - - - - - - - - - - - -
p20 q3 +/+ ENSP00000261797 NDST1 q3 q3 111.7 5 16679394 16680110 1 1 29% 33.8% 717 0.26 / 0.93 = 0.28 noComparaHits: hs3st1l2 noData
p21 --- gape ENSP00000315289 SYNPO noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000297130 MYOZ3 noMatch --- - - - - - - - - - - - -
ENSP00000314547 Q96MU4_HUMAN noMatch - - - - - - - - - - - -
p23 --- gape ENSP00000199814 RBM22 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000255263 DCTN4 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000322424 NM_032947.3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000367002 - noMatch --- - - - - - - - - - - - -
ENSP00000274599 ZNF300 noMatch - - - - - - - - - - - -
p27 --- gape ENSP00000373477 GPX3 noMatch --- - - - - - - - - - - - -
p28 --- gape ENSP00000373478 GPX3 noMatch --- - - - - - - - - - - - -