Overview on processed synteny regions for C3_GSH2_HUMAN_ENSG00000180613_2e6.protein.info
Rank | AlnOverview | AlnScore | RatioSum | logRatioSum | focalRatioSum | TargetGenome | chr | startPos | endPos | hitsCount | queryCov | meanIdentity | ori | score | compara |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 4756 | 13.56 | 3.23 | 3.98 | Danio_rerio | 20 | 20517784 | 20518810 | 2 | 65.8% | 73.9% | 1 | 278 | ortholog_one2many: gsh2 | |
2 | 1246 | 8.43 | 2.22 | 0.76 | Danio_rerio | 20 | |||||||||
3 | 1880 | 4.15 | 0.91 | 0.99 | Danio_rerio | 1 | |||||||||
4 | 410 | 1 | 0 | 0.25 | Danio_rerio | 14 | |||||||||
5 | 303 | 0.94 | -0.05 | 0.31 | Danio_rerio | Zv7_NA3207 | |||||||||
6 | 171 | 0.79 | -0.23 | 0.26 | Danio_rerio | 10 | |||||||||
7 | 161 | 0.78 | -0.24 | 0.26 | Danio_rerio | 13 | |||||||||
8 | 76 | 0.77 | -0.25 | 0.06 | Danio_rerio | 18 | |||||||||
9 | 134 | 0.76 | -0.26 | 0.25 | Danio_rerio | 2 | |||||||||
10 | 115 | 0.74 | -0.29 | 0.25 | Danio_rerio | 20 | |||||||||
11 | 119 | 0.74 | -0.29 | 0.25 | Danio_rerio | 23 | |||||||||
12 | 118 | 0.74 | -0.29 | 0.25 | Danio_rerio | 8 | |||||||||
13 | 118 | 0.74 | -0.29 | 0.25 | Danio_rerio | Zv7_scaffold2547 | |||||||||
14 | 106 | 0.73 | -0.3 | 0.24 | Danio_rerio | 18 | |||||||||
15 | 109 | 0.73 | -0.3 | 0.24 | Danio_rerio | 8 | |||||||||
16 | 103 | 0.73 | -0.3 | 0.24 | Danio_rerio | Zv7_NA1361 | |||||||||
17 | 106 | 0.73 | -0.3 | 0.24 | Danio_rerio | Zv7_NA1005 | |||||||||
18 | 96 | 0.72 | -0.32 | 0.24 | Danio_rerio | 11 | |||||||||
19 | 1424 | 1.69 | -0.33 | 0.19 | Danio_rerio | 7 | |||||||||
20 | 88 | 0.71 | -0.33 | 0.24 | Danio_rerio | 2 | |||||||||
21 | 73 | 0.71 | -0.33 | 0.24 | Danio_rerio | Zv7_NA3308 | |||||||||
22 | 82 | 0.71 | -0.33 | 0.24 | Danio_rerio | 22 | |||||||||
23 | 488 | 1.68 | -0.37 | 0.5 | Danio_rerio | 21 | |||||||||
24 | 186 | 0.65 | -0.42 | 0.33 | Danio_rerio | 13 | |||||||||
25 | 154 | 0.63 | -0.45 | 0.32 | Danio_rerio | Zv7_NA1887 | |||||||||
26 | 469 | 1.59 | -0.46 | 0.68 | Danio_rerio | 14 | |||||||||
27 | 114 | 0.6 | -0.5 | 0.3 | Danio_rerio | 20 | |||||||||
28 | 116 | 0.6 | -0.5 | 0.3 | Danio_rerio | 23 | |||||||||
29 | 114 | 0.6 | -0.5 | 0.3 | Danio_rerio | 2 | |||||||||
30 | 90 | 0.59 | -0.52 | 0.3 | Danio_rerio | 16 | |||||||||
31 | 89 | 0.58 | -0.53 | 0.29 | Danio_rerio | 16 | |||||||||
32 | 79 | 0.58 | -0.53 | 0.29 | Danio_rerio | Zv7_NA3755 | |||||||||
33 | 169 | 1.51 | -0.55 | 0.31 | Danio_rerio | 19 | |||||||||
34 | 144 | 1.5 | -0.57 | 0.31 | Danio_rerio | 20 | |||||||||
35 | 230 | 1.47 | -0.61 | 0.77 | Danio_rerio | 19 | 10539137 | 10540084 | 2 | 24% | 62.7% | 1 | 102 | noComparaHits: hoxa3a | |
36 | 165 | 1.39 | -0.73 | 0.37 | Danio_rerio | 13 | |||||||||
37 | 232 | 1.39 | -0.73 | 0.34 | Danio_rerio | 18 | |||||||||
38 | 269 | 1.38 | -0.74 | 0.57 | Danio_rerio | 8 | |||||||||
39 | 314 | 1.37 | -0.76 | 0.38 | Danio_rerio | 22 | |||||||||
40 | 235 | 1.36 | -0.77 | 0.55 | Danio_rerio | 23 | |||||||||
41 | 145 | 1.36 | -0.78 | 0.36 | Danio_rerio | 17 | |||||||||
42 | 222 | 1.33 | -0.82 | 0.54 | Danio_rerio | 7 | |||||||||
43 | 200 | 1.32 | -0.83 | 0.54 | Danio_rerio | 5 | |||||||||
44 | 170 | 1.31 | -0.84 | 0.54 | Danio_rerio | 6 | |||||||||
45 | 185 | 1.31 | -0.84 | 0.54 | Danio_rerio | 8 | |||||||||
46 | 181 | 1.32 | -0.84 | 0.54 | Danio_rerio | 6 | |||||||||
47 | 178 | 1.31 | -0.85 | 0.53 | Danio_rerio | 2 | |||||||||
48 | 189 | 1.24 | -0.95 | 0.46 | Danio_rerio | 17 | |||||||||
49 | 175 | 2.08 | -1.1 | 0.45 | Danio_rerio | 15 | |||||||||
50 | 304 | 1.97 | -1.26 | 0.71 | Danio_rerio | 10 | |||||||||
51 | 299 | 1.97 | -1.26 | 0.7 | Danio_rerio | 25 | |||||||||
52 | 253 | 1.95 | -1.29 | 0.7 | Danio_rerio | 2 | |||||||||
53 | 203 | 1.91 | -1.36 | 0.68 | Danio_rerio | 7 | |||||||||
54 | 1478 | 2.04 | -1.47 | 0.42 | Danio_rerio | 24 | |||||||||
55 | 507 | 2.72 | -1.56 | 1.47 | Danio_rerio | 5 | 60832994 | 60833656 | 1 | 68.1% | 44.1% | -1 | 134.6 | between_species_paralog: gsh1 | |
56 | 1595 | 1.82 | -2.52 | 0.44 | Danio_rerio | 14 | |||||||||
57 | 273 | 0.81 | -2.73 | 0.25 | Danio_rerio | 1 | |||||||||
58 | 233 | 0.67 | -2.94 | 0.3 | Danio_rerio | 9 |
Data table for reference protein loci
QueryProtein(s)=ENSP00000370771 (contained in p10)QueryGenome=Homo_sapiens
ref-loci | geneName | protID | transID | geneID | protName | chr | startPos | endPos | meanPos | ori | numExons | protLength | selfscore |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | USP46 | ENSP00000226440 | ENST00000226440 | ENSG00000109189 | UBP46_HUMAN | 4 | 53158563 | 53220041 | 53171529 | -1 | 9 | 355 | 698.4 |
p2 | NM_024534 | ENSP00000355331 | ENST00000295216 | ENSG00000163074 | NM_024534 | 4 | 53304753 | 53306444 | 53305593 | -1 | 1 | 563 | 196.3 |
p3 | RASL11B | ENSP00000370824 | ENST00000381416 | ENSG00000128045 | NP_076429.1 | 4 | 53423432 | 53426729 | 53426352 | 1 | 4 | 248 | 433.7 |
p4 | SCFD2 | ENSP00000373593 | ENST00000388941 | ENSG00000184178 | SCFD2_HUMAN | 4 | 53434893 | 53926865 | 53874663 | -1 | 9 | 684 | 1299.3 |
p5 | FIP1L1 | ENSP00000336752 | ENST00000337488 | ENSG00000145216 | FIP1_HUMAN | 4 | 53938763 | 54020373 | 53975612 | 1 | 18 | 594 | 1003.4 |
p6 | LNX1 | ENSP00000370784 | ENST00000381377 | ENSG00000072201 | LNX1_HUMAN | 4 | 54021831 | 54134926 | 54057199 | -1 | 10 | 728 | 1330.2 |
p7 | LOC441016 | ENSP00000370782 | ENST00000312008 | ENSG00000173966 | LOC441016 | 4 | 54136637 | 54137311 | 54136970 | 1 | 1 | 224 | 414.1 |
p8 | NP_001011538.1 | ENSP00000353928 | ENST00000334328 | ENSG00000186244 | NP_001011538.1 | 4 | 54547508 | 54547918 | 54547709 | -1 | 1 | 136 | 263.8 |
p9 | CHIC2 | ENSP00000370773 | ENST00000381368 | ENSG00000109220 | CHIC2_HUMAN | 4 | 54571019 | 54625224 | 54609954 | -1 | 6 | 165 | 311.1 |
p10 | GSH2_HUMAN | ENSP00000370771 | ENST00000381366 | ENSG00000180613 | GSH2_HUMAN | 4 | 54661269 | 54662846 | 54661722 | 1 | 2 | 304 | 522.6 |
p11 | PDGFRA | ENSP00000257290 | ENST00000257290 | ENSG00000134853 | PGFRA_HUMAN | 4 | 54819693 | 54856196 | 54835526 | 1 | 22 | 1089 | 1946.8 |
p12 | KIT | ENSP00000370749 | ENST00000381345 | ENSG00000157404 | KIT_HUMAN | 4 | 55218939 | 55299480 | 55286895 | 1 | 21 | 976 | 1842.8 |
p13 | KDR | ENSP00000370742 | ENST00000381338 | ENSG00000128052 | VGFR2_HUMAN | 4 | 55640865 | 55686217 | 55663380 | -1 | 30 | 1356 | 2607.1 |
p14 | NP_078868.1 | ENSP00000318188 | ENST00000324691 | ENSG00000128039 | NP_078868.1 | 4 | 55907261 | 55931015 | 55925108 | 1 | 5 | 318 | 636.8 |
p15 | TMEM165 | ENSP00000370736 | ENST00000381334 | ENSG00000134851 | TM165_HUMAN | 4 | 55957114 | 55986376 | 55978046 | 1 | 6 | 324 | 540.3 |
p16 | CLOCK | ENSP00000370726 | ENST00000381325 | ENSG00000134852 | CLOCK_HUMAN | 4 | 55996339 | 56043709 | 56011088 | -1 | 20 | 846 | 1498.2 |
p17 | PDCL2 | ENSP00000295645 | ENST00000295645 | ENSG00000163440 | PDCL2_HUMAN | 4 | 56117453 | 56153033 | 56123518 | -1 | 7 | 249 | 462.1 |
p18 | NMU | ENSP00000370717 | ENST00000381316 | ENSG00000109255 | NMU_HUMAN | 4 | 56160070 | 56197116 | 56170056 | -1 | 9 | 174 | 339.7 |
p19 | hCG_2040572 | ENSP00000370715 | ENST00000381314 | ENSG00000205700 | hCG_2040572 | 4 | 56398008 | 56398274 | 56398137 | 1 | 1 | 88 | 173 |
p20 | EXOC1 | ENSP00000370695 | ENST00000381295 | ENSG00000090989 | EXOC1_HUMAN | 4 | 56419247 | 56465418 | 56449819 | 1 | 18 | 894 | 1715.4 |
p21 | CEP135 | ENSP00000257287 | ENST00000257287 | ENSG00000174799 | CP135_HUMAN | 4 | 56513054 | 56585526 | 56542231 | 1 | 24 | 1140 | 2011.6 |
Parameter used for the loci-alignments
qLoci-Score_CutOff: 100 bitsqLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
region 1
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 20158523:26981491 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=13.56 log_scoreRatio_sum=3.23 focal_scoreRatio_sum=3.98
AlnScore=4756 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | q13 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | q12 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000373593 | SCFD2 | q1 | q1 | 416.1 | 20 | 20158523 | 20202321 | -1 | 3 | 59.1% | 55.1% | 1191 | 1 / 0.67 = 1.49 | ortholog_one2one: zgc:110750 | (1) |
p5 | --- | gapq | ENSP00000336752 | FIP1L1 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000370784 | LNX1 | q2 | q2 | 864.6 | 20 | 20262299 | 20328677 | -1 | 10 | 95.7% | 61.6% | 2190 | 0.48 / 0.35 = 1.37 | ortholog_one2one: lnx1 | 1 |
p7 | --- | gapq | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q3 | +/+ | ENSP00000370771 | GSH2_HUMAN | q10 | q3 | 278 | 20 | 20517784 | 20518810 | 1 | 2 | 65.8% | 73.9% | 594 | 0.57 / 0.46 = 1.24 | ortholog_one2many: gsh2 | 2 |
p11 | q4 | +/+ | ENSP00000257290 | PDGFRA | q10 | q4 | 1076.9 | 20 | 20538242 | 20565418 | 1 | 17 | 90% | 54.5% | 2997 | 0.53 / 0.44 = 1.2 | noComparaHits: pdgfra | 2 |
p12 | q5 | +/+ | ENSP00000370749 | KIT | q5 | q5 | 810.9 | 20 | 20633111 | 20664343 | 1 | 16 | 75.3% | 51% | 2343 | 0.65 / 0.55 = 1.18 | noComparaHits: kita | 1 |
p13 | q6 | +/+ | ENSP00000370742 | KDR | q6 | q6 | 1227.2 | 20 | 20725934 | 20769941 | -1 | 23 | 74.9% | 56.4% | 3219 | 0.58 / 0.52 = 1.12 | ortholog_one2one: kdrb | 1 |
p14 | q7 | +/+ | ENSP00000318188 | NP_078868.1 | q7 | q7 | 276.6 | 20 | 20803362 | 20807944 | 1 | 5 | 89.3% | 46% | 909 | 0.63 / 0.56 = 1.12 | ortholog_one2one: srd5a2l | 1 |
p15 | q8 | +/+ | ENSP00000370736 | TMEM165 | q8 | q8 | 357.2 | 20 | 20810790 | 20814789 | 1 | 4 | 71.9% | 79.6% | 708 | 0.95 / 0.33 = 2.88 | ortholog_one2one: tmem165 | 1 |
p16 | q9 | +/+ | ENSP00000370726 | CLOCK | q9 | q9 | 1072.9 | 20 | 20828228 | 20857826 | -1 | 17 | 84.3% | 70.4% | 2376 | 0.55 / 0.28 = 1.96 | ortholog_one2many: clock | 1 |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gapq | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q10 | gape | - | - | - | q10 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q11 | gape | - | - | - | q11 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q12 | gape | - | - | - | q12 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q13 | gape | - | - | - | q13 | - | - | - | - | - | - | - | - | - | - | - | - |
region 2
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 27015328:33693642 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=8.43 log_scoreRatio_sum=2.22 focal_scoreRatio_sum=0.76
AlnScore=1246 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000370749 | KIT | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000370742 | KDR | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gaps | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gaps | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gaps | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gaps | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gaps | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gaps | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q1 | gapp | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | q2 | +/+ | ENSP00000370695 | EXOC1 | q2 | q2 | 1465.1 | 20 | 27691457 | 27715842 | 1 | 17 | 96.5% | 83.2% | 2763 | 1 / 0.14 = 7.14 | ortholog_one2one: exoc1 | 1 |
p21 | q3 | /+ | ENSP00000257287 | CEP135 | q3 | q3 | 898.6 | 20 | 27834566 | 27856937 | -1 | 15 | 85.5% | 47.9% | 3123 | 0.71 / 0.55 = 1.29 | ortholog_one2one: Q5RG45_DANRE | 1 |
--- | q4 | gape | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
region 3
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 9705364:16540496 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=4.15 log_scoreRatio_sum=0.91 focal_scoreRatio_sum=0.99
AlnScore=1880 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000336752 | FIP1L1 | q1 | q1 | 404.5 | 1 | 10127196 | 10144672 | 1 | 9 | 45.5% | 67.1% | 831 | 0.9 / 0.59 = 1.53 | ortholog_one2many: zgc:103421 | 1 |
p6 | --- | gapq | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q2 | /+ | ENSP00000370773 | CHIC2 | q2 | q2 | 315.9 | 1 | 10150420 | 10159355 | 1 | 6 | 100% | 76.7% | 612 | 0.01 / 0.01 = 1 | ortholog_one2one: chic2 | 1 |
p10 | --- | gapq | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000257290 | PDGFRA | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000370749 | KIT | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000370742 | KDR | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | q3 | /+ | ENSP00000370726 | CLOCK | q3 | q3 | 985.9 | 1 | 15317226 | 15347569 | 1 | 17 | 80.3% | 66.7% | 2199 | 0.55 / 0.34 = 1.62 | ortholog_one2many: clock3 | 2 |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gapq | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q4 | gape | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
region 4
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 6279526:13064240 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=410 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000370742 | KDR | q1 | q1 | 1069.3 | 14 | 11701198 | 11807647 | -1 | 22 | 70.6% | 50.4% | 3141 | 0.58 / 0.58 = 1 | noComparaHits: flt4 | 2 |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 5
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3207 -i 41053:84661 -f 33e3 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.31
AlnScore=303 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 558.7 | Zv7_NA3207 | 41059 | 66922 | -1 | 12 | 47.6% | 54.5% | 1518 | 0.65 / 0.69 = 0.94 | noComparaHits: LOC100008185 | 5 |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 6
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 10 -i 32881565:34843552 -f 15e5 some_geneID_to_be_selected
scoreRatio_sum=0.79 log_scoreRatio_sum=-0.23 focal_scoreRatio_sum=0.26
AlnScore=171 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 316.4 | 10 | 34568656 | 34588546 | 1 | 8 | 38.6% | 43% | 1152 | 0.65 / 0.82 = 0.79 | noComparaHits: A4JYF3_DANRE | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 7
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 21708560:25248023 -f 27e5 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.26
AlnScore=161 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 296.8 | 13 | 23449212 | 23539289 | 1 | 8 | 29.6% | 46.2% | 954 | 0.65 / 0.83 = 0.78 | noComparaHits: ret1
; sec23ip ; LOC560826 ; c10orf119 |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 8
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 22136544:27133895 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=0.77 log_scoreRatio_sum=-0.25 focal_scoreRatio_sum=0.06
AlnScore=76 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000370749 | KIT | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000370742 | KDR | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gaps | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gaps | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gaps | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gaps | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gaps | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gaps | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gaps | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | q1 | +/+ | ENSP00000257287 | CEP135 | q1 | q1 | 153.4 | 18 | 26945491 | 27133895 | 1 | 2 | 94.6% | 20.6% | 3297 | 0.71 / 0.92 = 0.77 | noComparaHits: si:dkey-220e7.5
; si:busm1-241h12.4 ; ENSDARG00000056266 ; ENSDARG00000007976 ; cenpn ; si:busm1-172e19.1 ; zgc:153067 |
5 |
region 9
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 34524828:41354970 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.76 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=0.25
AlnScore=134 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 247.5 | 2 | 35234548 | 35251363 | 1 | 7 | 30.7% | 36.2% | 924 | 0.65 / 0.86 = 0.76 | noComparaHits: insra | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 10
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 17871502:20112683 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.25
AlnScore=115 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 212.1 | 20 | 19078744 | 19301773 | 1 | 6 | 21.7% | 48% | 645 | 0.65 / 0.88 = 0.74 | noComparaHits: si:dkey-33i22.2
; ENSDARG00000070596 ; sox7 ; pinx1 ; tdh ; mtmr9 |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 11
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 33310188:39929492 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.25
AlnScore=119 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 219.4 | 23 | 38093128 | 38322228 | -1 | 6 | 27.3% | 41.8% | 819 | 0.65 / 0.88 = 0.74 | noComparaHits: LOC796774
; src ; ENSDARG00000070197 ; mafb |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 12
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 10570432:17237162 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.25
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 217.6 | 8 | 11534038 | 11583329 | 1 | 6 | 26.8% | 39.1% | 759 | 0.65 / 0.88 = 0.74 | noComparaHits: LOC570636 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 13
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_scaffold2547 -i 9704:328498 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.25
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 218 | Zv7_scaffold2547 | 9704 | 68939 | 1 | 6 | 30.7% | 36% | 936 | 0.65 / 0.88 = 0.74 | noComparaHits: ENSDARG00000040258 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 14
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 43911103:46191711 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.24
AlnScore=106 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 196.1 | 18 | 45662265 | 45686065 | 1 | 5 | 27.2% | 35.6% | 813 | 0.65 / 0.89 = 0.73 | noComparaHits: si:ch211-176k6.1 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 15
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 33468887:35143409 -f 13e5 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.24
AlnScore=109 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 202.3 | 8 | 33771931 | 33785982 | -1 | 5 | 25.2% | 39.5% | 765 | 0.65 / 0.89 = 0.73 | noComparaHits: LOC570592 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 16
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1361 -i 16920:53460 -f 27e3 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.24
AlnScore=103 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 191.4 | Zv7_NA1361 | 16920 | 53457 | 1 | 5 | 25.1% | 37.9% | 735 | 0.65 / 0.89 = 0.73 | noComparaHits: rtk8 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 17
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1005 -i 565:85991 -f 64e3 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.24
AlnScore=106 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 195.6 | Zv7_NA1005 | 6222 | 85991 | 1 | 5 | 26.1% | 36.1% | 777 | 0.65 / 0.89 = 0.73 | noComparaHits: zgc:64141
; zgc:110264 ; ENSDARG00000054944 |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 18
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 24829642:26264263 -f 11e5 some_geneID_to_be_selected
scoreRatio_sum=0.72 log_scoreRatio_sum=-0.32 focal_scoreRatio_sum=0.24
AlnScore=96 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 178.1 | 11 | 25649581 | 25697911 | 1 | 5 | 32.4% | 31.3% | 930 | 0.65 / 0.9 = 0.72 | noComparaHits: zgc:112296 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 19
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 49460010:51736510 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=1.69 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.19
AlnScore=1424 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000226440 | USP46 | q1 | q1 | 628.9 | 7 | 50537443 | 50560015 | -1 | 8 | 99.7% | 81.1% | 1212 | 0.07 / 0.09 = 0.78 | noComparaHits: | 1 |
p2 | --- | gapq | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000370824 | RASL11B | q2 | q2 | 228.3 | 7 | 50569492 | 50574512 | 1 | 4 | 85.9% | 52.4% | 663 | 0.43 / 0.47 = 0.91 | between_species_paralog: zgc:110179 | 2 |
p4 | --- | gape | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000257290 | PDGFRA | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000370749 | KIT | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 20
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 9851561:16422369 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=0.71 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.24
AlnScore=88 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 162.4 | 2 | 15980488 | 16001277 | -1 | 4 | 19.3% | 40.7% | 567 | 0.65 / 0.91 = 0.71 | noComparaHits: | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 21
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3308 -i 1701:9224 -f 56e2 some_geneID_to_be_selected
scoreRatio_sum=0.71 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.24
AlnScore=73 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 136 | Zv7_NA3308 | 1731 | 9224 | -1 | 3 | 14% | 40.4% | 399 | 0.65 / 0.92 = 0.71 | noComparaHits: CSK (1 of 3) | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 22
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 2641092:8169804 -f 41e5 some_geneID_to_be_selected
scoreRatio_sum=0.71 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.24
AlnScore=82 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 152.4 | 22 | 2641092 | 2644478 | -1 | 3 | 16.6% | 44.2% | 471 | 0.65 / 0.91 = 0.71 | noComparaHits: | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 23
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 29311590:36016531 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.68 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=0.5
AlnScore=488 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 626.3 | 21 | 33964082 | 33983894 | -1 | 14 | 68% | 45.9% | 2040 | 0.65 / 0.66 = 0.98 | noComparaHits: ENSDARG00000053624 | 3 |
p13 | q2 | /+ | ENSP00000370742 | KDR | q1 | q2 | 434.5 | 21 | 29826634 | 29852027 | -1 | 12 | 32.4% | 43.7% | 1446 | 0.58 / 0.83 = 0.7 | noComparaHits: fgfr4 | noData |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 24
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 8993619:10788310 -f 13e5 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.33
AlnScore=186 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 363.5 | 13 | 9295353 | 9330736 | -1 | 10 | 27.3% | 51.5% | 972 | 0.53 / 0.81 = 0.65 | noComparaHits: fgfr3 | noData |
p12 | --- | gape | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 25
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1887 -i 4935:78034 -f 55e3 some_geneID_to_be_selected
scoreRatio_sum=0.63 log_scoreRatio_sum=-0.45 focal_scoreRatio_sum=0.32
AlnScore=154 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 300.1 | Zv7_NA1887 | 7995 | 78034 | 1 | 10 | 38.5% | 33.1% | 1269 | 0.53 / 0.84 = 0.63 | noComparaHits: ENSDARG00000040771
; zgc:112211 |
noData |
p12 | --- | gape | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 26
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 24338288:31084130 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.59 log_scoreRatio_sum=-0.46 focal_scoreRatio_sum=0.68
AlnScore=469 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 747.2 | 14 | 25776469 | 25810659 | 1 | 16 | 70.3% | 47.7% | 2340 | 0.53 / 0.61 = 0.87 | noComparaHits: pdgfrb2 | 3 |
p12 | q2 | /+ | ENSP00000370749 | KIT | q1 | q2 | 176.2 | 14 | 30545879 | 30570176 | -1 | 4 | 26.1% | 35.2% | 777 | 0.65 / 0.9 = 0.72 | noComparaHits: LOC572503 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 27
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 16016:247749 -f 17e4 some_geneID_to_be_selected
scoreRatio_sum=0.6 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=0.3
AlnScore=114 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 222 | 20 | 16016 | 23363 | 1 | 5 | 27.5% | 39.7% | 861 | 0.53 / 0.88 = 0.6 | noComparaHits: LOC567549 | noData |
p12 | --- | gape | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 28
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 3743146:5619436 -f 14e5 some_geneID_to_be_selected
scoreRatio_sum=0.6 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=0.3
AlnScore=116 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 226.3 | 23 | 5510045 | 5522331 | 1 | 5 | 25.4% | 41.7% | 870 | 0.53 / 0.88 = 0.6 | noComparaHits: LOC569951 | noData |
p12 | --- | gape | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 29
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 47645691:48938249 -f 97e4 some_geneID_to_be_selected
scoreRatio_sum=0.6 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=0.3
AlnScore=114 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 223.5 | 2 | 47653433 | 47669628 | -1 | 5 | 23.5% | 41.5% | 786 | 0.53 / 0.88 = 0.6 | noComparaHits: zgc:92124 | noData |
p12 | --- | gape | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 30
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 8511421:9783639 -f 95e4 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.3
AlnScore=90 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 176.3 | 16 | 9003889 | 9010989 | -1 | 4 | 24.4% | 33.8% | 819 | 0.53 / 0.9 = 0.59 | noComparaHits: LOC555259 | noData |
p12 | --- | gape | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 31
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 20991501:27826543 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.29
AlnScore=89 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 173.6 | 16 | 27432254 | 27459711 | -1 | 5 | 18.9% | 40% | 615 | 0.53 / 0.91 = 0.58 | noComparaHits: ptk2.1 | noData |
p12 | --- | gape | ENSP00000370749 | KIT | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 32
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3755 -i 9743:21073 -f 85e2 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.29
AlnScore=79 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 154.2 | Zv7_NA3755 | 9743 | 21073 | 1 | 5 | 19.8% | 36.4% | 636 | 0.53 / 0.92 = 0.58 | noComparaHits: LOC793566 | noData |
p12 | --- | gape | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 33
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 34480809:41290676 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.31
AlnScore=169 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 213.1 | 19 | 40958542 | 40973705 | -1 | 6 | 25.7% | 40.2% | 762 | 0.65 / 0.88 = 0.74 | noComparaHits: yrk | noData |
p13 | --- | gapq | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | q2 | /+ | ENSP00000257287 | CEP135 | q2 | q2 | 157.5 | 19 | 34506658 | 34509900 | 1 | 1 | 96.1% | 22% | 3243 | 0.71 / 0.92 = 0.77 | noComparaHits: ENSDARG00000044212 | 4 |
region 34
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 49619936:56174644 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.5 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.31
AlnScore=144 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | /+ | ENSP00000370749 | KIT | q1 | q1 | 209.2 | 20 | 51438564 | 51504200 | 1 | 6 | 27% | 37.8% | 801 | 0.65 / 0.88 = 0.74 | noComparaHits: si:ch211-122l14.1 | noData |
p13 | --- | gapq | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | q2 | +/+ | ENSP00000257287 | CEP135 | q2 | q2 | 117.4 | 20 | 50181046 | 50184120 | -1 | 1 | 91.9% | 20% | 3075 | 0.71 / 0.94 = 0.76 | noComparaHits: myh6 | noData |
region 35
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 9398850:15106665 -f 43e5 some_geneID_to_be_selected
scoreRatio_sum=1.47 log_scoreRatio_sum=-0.61 focal_scoreRatio_sum=0.77
AlnScore=230 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000370771 | GSH2_HUMAN | q1 | q1 | 102 | 19 | 10539137 | 10540084 | 1 | 2 | 24% | 62.7% | 219 | 0.57 / 0.8 = 0.71 | noComparaHits: hoxa3a | 4 |
p11 | --- | gapq | ENSP00000257290 | PDGFRA | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000370749 | KIT | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000370742 | KDR | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | q2 | /+ | ENSP00000257287 | CEP135 | q2 | q2 | 125.1 | 19 | 13248297 | 13250963 | -1 | 1 | 78.9% | 20% | 2667 | 0.71 / 0.93 = 0.76 | noComparaHits: Q503P9_DANRE | noData |
region 36
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 43457087:50113364 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.39 log_scoreRatio_sum=-0.73 focal_scoreRatio_sum=0.37
AlnScore=165 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q1 | gapp | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q2 | /+ | ENSP00000257290 | PDGFRA | q2 | q2 | 272.1 | 13 | 47837294 | 47891403 | 1 | 8 | 20.5% | 53.7% | 705 | 0.53 / 0.86 = 0.62 | noComparaHits: fgfr2 | noData |
p12 | --- | gapq | ENSP00000370749 | KIT | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000370742 | KDR | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | q3 | /+ | ENSP00000257287 | CEP135 | q3 | q3 | 152.2 | 13 | 46601176 | 46604442 | 1 | 1 | 94.7% | 20% | 3267 | 0.71 / 0.92 = 0.77 | noComparaHits: | 6 |
region 37
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 12410173:18720316 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=1.39 log_scoreRatio_sum=-0.73 focal_scoreRatio_sum=0.34
AlnScore=232 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 247.3 | 18 | 13263223 | 13293608 | 1 | 7 | 40.3% | 31.8% | 1206 | 0.65 / 0.86 = 0.76 | noComparaHits: igf1ra | noData |
p13 | --- | gapq | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | q2 | /+ | ENSP00000370726 | CLOCK | q2 | q2 | 174 | 18 | 18705597 | 18720316 | 1 | 5 | 24.8% | 39.3% | 684 | 0.55 / 0.88 = 0.63 | noComparaHits: arntl2 | 4 |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 38
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 46063094:48952374 -f 22e5 some_geneID_to_be_selected
scoreRatio_sum=1.38 log_scoreRatio_sum=-0.74 focal_scoreRatio_sum=0.57
AlnScore=269 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | /+ | ENSP00000257290 | PDGFRA | q1 | q1 | 327.8 | 8 | 46063115 | 46108517 | -1 | 9 | 25.3% | 52.1% | 846 | 0.53 / 0.83 = 0.64 | noComparaHits: fgfr1 | noData |
p12 | q2 | +/+ | ENSP00000370749 | KIT | q1 | q2 | 217.6 | 8 | 48243137 | 48391827 | 1 | 6 | 27.3% | 38.8% | 771 | 0.65 / 0.88 = 0.74 | noComparaHits: CACNA1E
; ENSDARG00000068034 ; LOC570636 |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 39
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 8533748:15296151 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.37 log_scoreRatio_sum=-0.76 focal_scoreRatio_sum=0.38
AlnScore=314 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | /+ | ENSP00000370784 | LNX1 | q1 | q1 | 277.2 | 22 | 14177023 | 14573193 | -1 | 9 | 50.4% | 35.8% | 1122 | 0.48 / 0.79 = 0.61 | noComparaHits: inadl
; LOC556075 ; si:ch211-155o21.1 ; nfia ; LOC100003398 ; LOC797542 |
4 |
p7 | --- | gapq | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000257290 | PDGFRA | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q2 | +/+ | ENSP00000370749 | KIT | q2 | q2 | 253.6 | 22 | 8533817 | 8578386 | -1 | 7 | 33% | 35.3% | 1005 | 0.65 / 0.86 = 0.76 | noComparaHits: insrb | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 40
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 14254254:21047677 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.36 log_scoreRatio_sum=-0.77 focal_scoreRatio_sum=0.55
AlnScore=235 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 246.1 | 23 | 15139084 | 15183524 | 1 | 6 | 34% | 35.1% | 1125 | 0.53 / 0.87 = 0.61 | noComparaHits: zgc:158791 | noData |
p12 | q2 | /+ | ENSP00000370749 | KIT | q1 | q2 | 224.1 | 23 | 20208151 | 20376703 | -1 | 6 | 29.9% | 36.2% | 975 | 0.65 / 0.87 = 0.75 | noComparaHits: ENSDARG00000070738
; LOC566249 ; LOC100005960 |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 41
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 26797807:28774665 -f 15e5 some_geneID_to_be_selected
scoreRatio_sum=1.36 log_scoreRatio_sum=-0.78 focal_scoreRatio_sum=0.36
AlnScore=145 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | /+ | ENSP00000257290 | PDGFRA | q1 | q1 | 227 | 17 | 28742676 | 28757762 | 1 | 6 | 22.6% | 43.7% | 747 | 0.53 / 0.88 = 0.6 | noComparaHits: fyn | noData |
p12 | --- | gapq | ENSP00000370749 | KIT | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | q2 | /+ | ENSP00000257287 | CEP135 | q2 | q2 | 132.1 | 17 | 27677957 | 27680485 | 1 | 1 | 74% | 21% | 2529 | 0.71 / 0.93 = 0.76 | noComparaHits: smyd2
; ENSDARG00000055133 |
7 |
region 42
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 3706937:10149675 -f 48e5 some_geneID_to_be_selected
scoreRatio_sum=1.33 log_scoreRatio_sum=-0.82 focal_scoreRatio_sum=0.54
AlnScore=222 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 221.8 | 7 | 7739874 | 7759904 | 1 | 6 | 25.8% | 39.3% | 846 | 0.53 / 0.88 = 0.6 | noComparaHits: igf1rb | noData |
p12 | q2 | +/+ | ENSP00000370749 | KIT | q1 | q2 | 201.8 | 7 | 10071591 | 10149648 | 1 | 6 | 19.5% | 45% | 579 | 0.65 / 0.89 = 0.73 | noComparaHits: LOC566739
; furina |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 43
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 45286179:52002663 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.83 focal_scoreRatio_sum=0.54
AlnScore=200 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 241.3 | 5 | 49177222 | 49218672 | 1 | 6 | 30.3% | 39.6% | 963 | 0.53 / 0.87 = 0.61 | noComparaHits: A3KPS2_DANRE | noData |
p12 | q2 | /+ | ENSP00000370749 | KIT | q1 | q2 | 159.6 | 5 | 50766296 | 50779181 | -1 | 4 | 15.9% | 46.3% | 456 | 0.65 / 0.91 = 0.71 | noComparaHits: A2CES6_DANRE | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 44
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 10304175:17134377 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.31 log_scoreRatio_sum=-0.84 focal_scoreRatio_sum=0.54
AlnScore=170 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 195.8 | 6 | 17037457 | 17086796 | -1 | 3 | 32.8% | 31.4% | 1044 | 0.53 / 0.89 = 0.6 | noComparaHits: si:dkey-209n16.1 | noData |
p12 | q2 | /+ | ENSP00000370749 | KIT | q1 | q2 | 143.5 | 6 | 16628602 | 16689310 | 1 | 4 | 18% | 40.2% | 555 | 0.65 / 0.92 = 0.71 | noComparaHits: jak1
; dre-mir-101a |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 45
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 17809049:22800015 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=1.31 log_scoreRatio_sum=-0.84 focal_scoreRatio_sum=0.54
AlnScore=185 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 217.2 | 8 | 21652342 | 21657597 | -1 | 5 | 27.4% | 39.8% | 894 | 0.53 / 0.88 = 0.6 | noComparaHits: LOC555232 | noData |
p12 | q2 | /+ | ENSP00000370749 | KIT | q1 | q2 | 151.9 | 8 | 18145969 | 18178976 | 1 | 4 | 14.2% | 47.6% | 417 | 0.65 / 0.91 = 0.71 | noComparaHits: zgc:110383 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 46
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 27422621:34063131 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.84 focal_scoreRatio_sum=0.54
AlnScore=181 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q2 | q1 | 157.9 | 6 | 32495015 | 32514514 | -1 | 4 | 19.6% | 39.5% | 636 | 0.53 / 0.91 = 0.58 | noComparaHits: rbm19
; rtk6 |
noData |
p12 | q2 | /+ | ENSP00000370749 | KIT | q2 | q2 | 206.8 | 6 | 29304378 | 29358821 | 1 | 6 | 26.1% | 40.2% | 786 | 0.65 / 0.88 = 0.74 | noComparaHits: LOC100002448 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 47
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 32289880:34471611 -f 16e5 some_geneID_to_be_selected
scoreRatio_sum=1.31 log_scoreRatio_sum=-0.85 focal_scoreRatio_sum=0.53
AlnScore=178 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q2 | q1 | 153.7 | 2 | 33224947 | 33262685 | -1 | 4 | 18.4% | 35% | 603 | 0.53 / 0.92 = 0.58 | noComparaHits: ENSDARG00000011600 | noData |
p12 | q2 | +/+ | ENSP00000370749 | KIT | q2 | q2 | 186.1 | 2 | 32783706 | 32873148 | -1 | 5 | 21% | 41.4% | 609 | 0.65 / 0.89 = 0.73 | noComparaHits: zgc:152896
; epha4a |
noData |
p13 | --- | gape | ENSP00000370742 | KDR | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 48
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 7572691:14128345 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.24 log_scoreRatio_sum=-0.95 focal_scoreRatio_sum=0.46
AlnScore=189 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 198.1 | 17 | 13689703 | 13697721 | -1 | 5 | 21.1% | 41.9% | 723 | 0.53 / 0.89 = 0.6 | noComparaHits: ros1 | noData |
p12 | --- | gapq | ENSP00000370749 | KIT | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q2 | +/+ | ENSP00000370742 | KDR | q2 | q2 | 236.2 | 17 | 8445712 | 8522713 | 1 | 7 | 19% | 41.7% | 777 | 0.58 / 0.9 = 0.64 | noComparaHits: dtk | noData |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 49
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 15 -i 36886739:43651496 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=2.08 log_scoreRatio_sum=-1.1 focal_scoreRatio_sum=0.45
AlnScore=175 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000257290 | PDGFRA | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000370749 | KIT | q1 | q1 | 157.9 | 15 | 36886739 | 36894853 | 1 | 4 | 15.9% | 43.4% | 465 | 0.65 / 0.91 = 0.71 | noComparaHits: rtk4 | noData |
p13 | q2 | /+ | ENSP00000370742 | KDR | q1 | q2 | 121.5 | 15 | 42831869 | 42832960 | 1 | 3 | 11.7% | 39.9% | 456 | 0.58 / 0.95 = 0.61 | noComparaHits: ENSDARG00000063691 | noData |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | q3 | +/+ | ENSP00000257287 | CEP135 | q3 | q3 | 127.9 | 15 | 43647057 | 43649636 | 1 | 1 | 76.1% | 22% | 2580 | 0.71 / 0.93 = 0.76 | noComparaHits: ENSDARG00000061928 | 8 |
region 50
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 10 -i 307776:4431722 -f 31e5 some_geneID_to_be_selected
scoreRatio_sum=1.97 log_scoreRatio_sum=-1.26 focal_scoreRatio_sum=0.71
AlnScore=304 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 299.9 | 10 | 3100574 | 3166283 | -1 | 7 | 35.8% | 39.3% | 1173 | 0.53 / 0.84 = 0.63 | noComparaHits: musk | noData |
p12 | q2 | +/+ | ENSP00000370749 | KIT | q1 | q2 | 141.2 | 10 | 2982334 | 2985364 | -1 | 3 | 13.5% | 45.9% | 396 | 0.65 / 0.92 = 0.71 | noComparaHits: syk | noData |
p13 | q3 | +/+ | ENSP00000370742 | KDR | q1 | q3 | 194.3 | 10 | 2825762 | 2849393 | 1 | 3 | 28% | 34.2% | 1125 | 0.58 / 0.92 = 0.63 | noComparaHits: | noData |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 51
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 25 -i 6631109:13463853 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.97 log_scoreRatio_sum=-1.26 focal_scoreRatio_sum=0.7
AlnScore=299 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000257290 | PDGFRA | q1 | q1 | 210.7 | 25 | 7373432 | 7411300 | 1 | 5 | 22.7% | 42.7% | 735 | 0.53 / 0.89 = 0.6 | noComparaHits: si:dkey-18e5.1 | noData |
p12 | q2 | +/+ | ENSP00000370749 | KIT | q2 | q2 | 207.4 | 25 | 9273161 | 9321900 | 1 | 6 | 26.2% | 39.2% | 810 | 0.65 / 0.88 = 0.74 | noComparaHits: met | noData |
p13 | q3 | +/+ | ENSP00000370742 | KDR | q2 | q3 | 208.5 | 25 | 11610476 | 11639736 | -1 | 6 | 18.8% | 36.1% | 774 | 0.58 / 0.92 = 0.63 | noComparaHits: LOC563480 | noData |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 52
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 801138:6482396 -f 43e5 some_geneID_to_be_selected
scoreRatio_sum=1.95 log_scoreRatio_sum=-1.29 focal_scoreRatio_sum=0.7
AlnScore=253 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q1 | gapp | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q2 | /+ | ENSP00000257290 | PDGFRA | q3 | q2 | 176 | 2 | 1409533 | 1420885 | -1 | 5 | 18.3% | 46.4% | 591 | 0.53 / 0.9 = 0.59 | noComparaHits: egfr | noData |
p12 | q3 | +/+ | ENSP00000370749 | KIT | q4 | q3 | 195.8 | 2 | 3920226 | 3927018 | 1 | 5 | 24.7% | 39.7% | 720 | 0.65 / 0.89 = 0.73 | noComparaHits: LOC559428 | noData |
p13 | q4 | +/+ | ENSP00000370742 | KDR | q4 | q4 | 198.2 | 2 | 4686670 | 4768803 | -1 | 5 | 20.6% | 36% | 837 | 0.58 / 0.92 = 0.63 | noComparaHits: ek3
; PCOLCE2 (2 of 2) |
noData |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 53
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 11125263:17651152 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.91 log_scoreRatio_sum=-1.36 focal_scoreRatio_sum=0.68
AlnScore=203 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | /+ | ENSP00000257290 | PDGFRA | q1 | q1 | 156.5 | 7 | 15792145 | 15820485 | -1 | 4 | 17.2% | 35.9% | 558 | 0.53 / 0.91 = 0.58 | noComparaHits: ENSDARG00000069493 | noData |
p12 | q2 | +/+ | ENSP00000370749 | KIT | q1 | q2 | 160.1 | 7 | 17531401 | 17536268 | 1 | 4 | 19.4% | 39.8% | 573 | 0.65 / 0.91 = 0.71 | noComparaHits: zgc:154019 | noData |
p13 | q3 | /+ | ENSP00000370742 | KDR | q1 | q3 | 132.3 | 7 | 17648717 | 17651077 | 1 | 3 | 10.6% | 43.5% | 432 | 0.58 / 0.94 = 0.62 | noComparaHits: zgc:113403
; zgc:154019 |
noData |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 54
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 19769891:26615121 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=2.04 log_scoreRatio_sum=-1.47 focal_scoreRatio_sum=0.42
AlnScore=1478 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000226440 | USP46 | q1 | q1 | 531.3 | 24 | 20188764 | 20199808 | -1 | 6 | 94.4% | 78.9% | 1038 | 0.07 / 0.23 = 0.3 | noComparaHits: | 3 |
--- | q2 | gapp | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gapq | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q3 | +/+ | ENSP00000370784 | LNX1 | q3 | q3 | 585.9 | 24 | 20234496 | 20259200 | -1 | 7 | 75.3% | 54% | 1650 | 0.48 / 0.55 = 0.87 | between_species_paralog: lnx2 | 2 |
p7 | --- | gapq | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000353928 | NP_001011538.1 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000257290 | PDGFRA | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000370749 | KIT | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q4 | +/+ | ENSP00000370742 | KDR | q4 | q4 | 844.8 | 24 | 20340485 | 20391286 | -1 | 20 | 66.4% | 47.1% | 2802 | 0.58 / 0.67 = 0.87 | noComparaHits: flt1 | 4 |
p14 | --- | gapq | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gapq | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gapq | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gapq | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gapq | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gapq | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q5 | gape | - | - | - | q5 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q6 | gape | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q7 | gape | - | - | - | q7 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q8 | gape | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
region 55
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 60832994:67600533 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=2.72 log_scoreRatio_sum=-1.56 focal_scoreRatio_sum=1.47
AlnScore=507 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | /+ | ENSP00000370771 | GSH2_HUMAN | q1 | q1 | 134.6 | 5 | 60832994 | 60833656 | -1 | 1 | 68.1% | 44.1% | 663 | 0.57 / 0.74 = 0.77 | between_species_paralog: gsh1 | 3 |
p11 | q2 | +/+ | ENSP00000257290 | PDGFRA | q3 | q2 | 194.4 | 5 | 61336667 | 61351164 | 1 | 5 | 24.5% | 35.3% | 792 | 0.53 / 0.9 = 0.59 | noComparaHits: ephb4a | noData |
p12 | q3 | +/+ | ENSP00000370749 | KIT | q4 | q3 | 197 | 5 | 63394460 | 63417933 | 1 | 5 | 23.2% | 41.8% | 675 | 0.65 / 0.89 = 0.73 | noComparaHits: ddr2 | noData |
p13 | q4 | +/+ | ENSP00000370742 | KDR | q4 | q4 | 186.1 | 5 | 67238410 | 67246094 | -1 | 5 | 17.5% | 40.7% | 684 | 0.58 / 0.92 = 0.63 | noComparaHits: LOC100000720 | noData |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 56
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 35695257:39174722 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=1.82 log_scoreRatio_sum=-2.52 focal_scoreRatio_sum=0.44
AlnScore=1595 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000226440 | USP46 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | /+ | ENSP00000370784 | LNX1 | q1 | q1 | 479.1 | 14 | 37352211 | 37369856 | 1 | 6 | 61% | 50.9% | 1383 | 0.48 / 0.63 = 0.76 | between_species_paralog: zgc:85925 | 3 |
p7 | --- | gapq | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q2 | +/+ | ENSP00000370773 | CHIC2 | q2 | q2 | 280.4 | 14 | 37377724 | 37384490 | -1 | 5 | 98.8% | 63.4% | 636 | 0.01 / 0.09 = 0.11 | between_species_paralog: Q2YDQ7_DANRE | 2 |
p10 | --- | gapq | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000257290 | PDGFRA | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000370749 | KIT | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q3 | +/+ | ENSP00000370742 | KDR | q3 | q3 | 992.1 | 14 | 37417093 | 37461037 | -1 | 22 | 63.4% | 54.6% | 2682 | 0.58 / 0.61 = 0.95 | noComparaHits: kdr | 3 |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 57
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 27699808:34472485 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.81 log_scoreRatio_sum=-2.73 focal_scoreRatio_sum=0.25
AlnScore=273 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000226440 | USP46 | q1 | q1 | 145.5 | 1 | 34402715 | 34406180 | 1 | 4 | 63.9% | 37.2% | 669 | 0.07 / 0.79 = 0.09 | noComparaHits: | 5 |
p2 | --- | gapq | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000257290 | PDGFRA | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q2 | /+ | ENSP00000370749 | KIT | q2 | q2 | 174.6 | 1 | 27996694 | 28011007 | 1 | 5 | 18.8% | 38.8% | 549 | 0.65 / 0.9 = 0.72 | noComparaHits: LOC100005538 | noData |
p13 | --- | gape | ENSP00000370742 | KDR | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 58
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 36282684:43107228 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-2.94 focal_scoreRatio_sum=0.3
AlnScore=233 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | /+ | ENSP00000226440 | USP46 | q1 | q1 | 128.6 | 9 | 43106983 | 43107228 | -1 | 1 | 23.1% | 78.3% | 246 | 0.07 / 0.81 = 0.09 | noComparaHits: egfl6 | 6 |
p2 | --- | gapq | ENSP00000355331 | NM_024534 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000370824 | RASL11B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000373593 | SCFD2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000336752 | FIP1L1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000370784 | LNX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000370782 | LOC441016 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000353928 | NP_001011538.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000370773 | CHIC2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000370771 | GSH2_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q2 | +/+ | ENSP00000257290 | PDGFRA | q2 | q2 | 168.2 | 9 | 36857965 | 36976443 | -1 | 5 | 31.6% | 30.5% | 1110 | 0.53 / 0.91 = 0.58 | noComparaHits: ttna | noData |
p12 | --- | gape | ENSP00000370749 | KIT | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000370742 | KDR | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000318188 | NP_078868.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000370736 | TMEM165 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000370726 | CLOCK | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000295645 | PDCL2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p18 | --- | gape | ENSP00000370717 | NMU | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p19 | --- | gape | ENSP00000370715 | hCG_2040572 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p20 | --- | gape | ENSP00000370695 | EXOC1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p21 | --- | gape | ENSP00000257287 | CEP135 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |