Overview on processed synteny regions for C2_CDX4_ENSG00000131264_15e5.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=2934293410.342.530.99Danio_rerio7
2region2, score=5205202.550.470.22Danio_rerio5
3region3, score=119211922.530.471.92Danio_rerio14 37387100 37389654 3 95.4% 51.2% -1 254.3 ortholog_one2one: cdx4
4region4, score=1441440.9900.08Danio_rerio16
5region5, score=6696690.97-0.020.49Danio_rerio1
6region6, score=1081080.96-0.030.06Danio_rerio23
7region7, score=1141140.95-0.040.08Danio_rerio20
8region8, score=1151150.95-0.040.08Danio_rerio6
9region9, score=1161160.95-0.040.08Danio_rerioZv7_NA1282
10region10, score=82820.92-0.070.08Danio_rerio22
11region11, score=2292290.91-0.080.46Danio_rerio4
12region12, score=1831830.86-0.140.86Danio_rerio21 43615612 43626238 2 63.4% 34.8% 1 102 between_species_paralog: CDX1
13region13, score=7657651.85-0.150.19Danio_rerio11
14region14, score=6556550.85-0.150.11Danio_rerio21
15region15, score=1661660.85-0.150.43Danio_rerio25
16region16, score=4974970.84-0.160.12Danio_rerioZv7_NA817
17region17, score=7897892.7-0.350.27Danio_rerio14
18region18, score=3973970.7-0.350.09Danio_rerio20
19region19, score=2372370.66-0.410.07Danio_rerio24
20region20, score=3273270.63-0.450.09Danio_rerio11
21region21, score=3193190.62-0.470.09Danio_rerioZv7_NA1092
22region22, score=2892890.59-0.520.07Danio_rerioZv7_NA3324
23region23, score=6396390.58-0.530.04Danio_rerio7
24region24, score=2402400.56-0.570.07Danio_rerio5
25region25, score=1971970.53-0.620.07Danio_rerio17
26region26, score=2002000.53-0.620.07Danio_rerio12
27region27, score=2842841.51-0.650.15Danio_rerio12
28region28, score=1621620.51-0.660.06Danio_rerio18
29region29, score=1731730.51-0.660.06Danio_rerio3
30region30, score=1741740.51-0.660.06Danio_rerio23
31region31, score=1391390.49-0.70.06Danio_rerio5
32region32, score=2242241.45-0.730.14Danio_rerio7
33region33, score=2232231.44-0.740.14Danio_rerio8
34region34, score=5435430.47-0.750.04Danio_rerio14
35region35, score=1841841.42-0.770.14Danio_rerio7
36region36, score=3763761.23-1.120.47Danio_rerio7
37region37, score=9409400.87-1.670.08Danio_rerio6
38region38, score=4034030.15-1.890.03Danio_rerio5
39region39, score=4674670.09-2.40.01Danio_rerio23
40region40, score=6926920.03-3.50.01Danio_rerio8
41region41, score=4704700.02-3.90.01Danio_rerio19
42region42, score=4534530.02-3.90.01Danio_rerio16
43region43, score=2952950.01-4.60Danio_rerio17

Data table for reference protein loci

QueryProtein(s)=ENSP00000362613 (contained in p17)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 RPS26L1 ENSP00000349197 ENST00000356756 ENSG00000196933 RS26L_HUMAN X 71181120 71181467 71181288 1 1 115 222.3
p2 RGAG4 ENSP00000327693 ENST00000327971 ENSG00000183551 RGAG4_HUMAN X 71266406 71268115 71267255 -1 1 569 931
p3 NP_001013649.1 ENSP00000362781 ENST00000373677 ENSG00000204131 NP_001013649.1 X 71275222 71277351 71276281 1 1 709 1297.3
p4 TPT1L_HUMAN ENSP00000324208 ENST00000317148 ENSG00000198359 TPT1L_HUMAN X 71296408 71296827 71296612 1 1 139 256
p5 PIN4 ENSP00000218432 ENST00000218432 ENSG00000102309 PIN4_HUMAN X 71318286 71334101 71333399 1 4 156 314.8
p6 NP_001009954.1 ENSP00000334675 ENST00000334463 ENSG00000186871 NP_060139.2 X 71341589 71375486 71343461 -1 2 1250 2266.9
p7 RPS4X ENSP00000362744 ENST00000316084 ENSG00000198034 RS4X_HUMAN X 71409246 71413770 71410506 -1 7 263 518.2
p8 CITED1 ENSP00000362721 ENST00000373619 ENSG00000125931 CITE1_HUMAN X 71438298 71439444 71438583 -1 2 193 356.1
p9 HDAC8 ENSP00000362674 ENST00000373573 ENSG00000147099 - X 71466629 71709336 71627559 -1 12 378 765.6
p10 PHKA1 ENSP00000362640 ENST00000373539 ENSG00000067177 hCG_18635 X 71717577 71850453 71759778 -1 33 1240 2427.5
p11 CXorf50 ENSP00000348411 ENST00000356102 ENSG00000184911 Q8TAW5_HUMAN X 71914186 71914485 71914330 1 1 99 185.3
p12 CXorf50 ENSP00000334501 ENST00000334036 ENSG00000184911 DMRTC_HUMAN X 71981695 71984934 71983472 1 6 192 354.5
p13 - ENSP00000362624 ENST00000373524 ENSG00000204119 - X 72074828 72075398 72075119 1 3 79 166.5
p14 RBM32B ENSP00000362621 ENST00000373521 ENSG00000184388 NP_001035971.1 X 72140207 72140809 72140504 1 1 200 371.9
p15 NAP1L6 ENSP00000362617 ENST00000373518 ENSG00000204118 XR_017910.1 X 72264123 72264446 72264279 -1 1 107 196.2
p16 NAP1L2 ENSP00000362616 ENST00000373517 ENSG00000186462 NP1L2_HUMAN X 72349671 72351053 72350358 -1 1 460 844.6
p17 CDX4 ENSP00000362613 ENST00000373514 ENSG00000131264 CDX4_HUMAN X 72583815 72591146 72584238 1 3 284 557.3
p18 CHIC1 ENSP00000362603 ENST00000373504 ENSG00000204116 CHIC1_HUMAN X 72699867 72817565 72714014 1 6 217 375
p19 FXYD8 ENSP00000362594 ENST00000373495 ENSG00000182707 FXYD8_HUMAN X 73011628 73012195 73011766 1 2 94 181.2
p20 Q6ZNG4_HUMAN ENSP00000362593 ENST00000373494 ENSG00000204115 Q6ZNG4_HUMAN X 73261751 73263942 73261901 -1 2 102 64.5
p21 USMG5P1 ENSP00000362589 ENST00000373490 ENSG00000204114 - X 73310450 73310626 73310534 1 1 58 112.2
p22 BMP2KL ENSP00000362587 ENST00000373488 ENSG00000204113 Q5H9B9_HUMAN X 73322489 73323715 73323098 1 1 408 757
p23 ZCCHC13 ENSP00000362585 ENST00000373486 ENSG00000187969 ZCH13_HUMAN X 73440827 73441327 73441073 1 1 166 341.9
p24 SLC16A2 ENSP00000276033 ENST00000276033 ENSG00000147100 MOT8_HUMAN X 73557976 73668113 73661037 1 6 613 892
p25 Q9H3B5_HUMAN ENSP00000346698 ENST00000354671 ENSG00000197501 Q9H3B5_HUMAN X 73723418 73723591 73723499 1 1 57 80.8
p26 RNF12 ENSP00000328059 ENST00000332687 ENSG00000131263 RNF12_HUMAN X 73728000 73732537 73728933 -1 3 624 1095.2
p27 KIAA2022 ENSP00000362567 ENST00000373468 ENSG00000050030 K2022_HUMAN X 73875965 73882210 73878837 -1 3 1516 2755.9
total length of ref-loci (on slice) = 2701091 (27e5)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 1
region1, score=2934 region1, score=2934 region1, score=2934
syntenyRegion: Danio_rerio.glob03.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 49033751:51630791 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=10.34 log_scoreRatio_sum=2.53 focal_scoreRatio_sum=0.99
AlnScore=2934 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 q1 /+ ENSP00000362781 NP_001013649.1 q1 q1 300.6 7 50414076 50416133 1 2 81.2% 38.2% 1761 0.85 / 0.76 = 1.12 noComparaHits: 1
p4 --- gapq ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 q2 +/+ ENSP00000362744 RPS4X q2 q2 496.8 7 50250999 50256275 1 6 99.2% 92% 804 0.21 / 0.04 = 5.25 ortholog_one2many: rps4x 1
p8 q3 +/+ ENSP00000362721 CITED1 q3 q3 130.7 7 50245978 50246436 1 1 87% 51.8% 459 0.73 / 0.63 = 1.16 noComparaHits: 1
p9 q4 +/+ ENSP00000362674 HDAC8 q4 q4 529 7 50179948 50212664 1 8 84.4% 69.7% 1056 0.53 / 0.3 = 1.77 ortholog_one2one: hdac8 1
p10 q5 +/+ ENSP00000362640 PHKA1 q5 q5 1742.9 7 50140282 50176672 1 30 96.5% 67.9% 3810 0.29 / 0.28 = 1.04 ortholog_one2many: LOC793016 1
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 2
region2, score=520 region2, score=520 region2, score=520
syntenyRegion: Danio_rerio.glob02.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 11243216:14865915 -f 27e5 some_geneID_to_be_selected
scoreRatio_sum=2.55 log_scoreRatio_sum=0.47 focal_scoreRatio_sum=0.22
AlnScore=520 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 922.3 5 13462690 13469302 1 3 73.7% 56.4% 2844 0.84 / 0.59 = 1.42 ortholog_one2one: A2BGR3_DANRE 1
p7 --- gapq ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gapq ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gapq ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 q2 +/+ ENSP00000362567 KIAA2022 q2 q2 426.2 5 12668184 12671447 1 4 52.7% 38.3% 2316 0.95 / 0.84 = 1.13 noComparaHits: 1
--- q3 gape - - - q3 - - - - - - - - - - - -
--- q4 gape - - - q4 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 3
region3, score=1192 region3, score=1192 region3, score=1192
syntenyRegion: Danio_rerio.glob05.14.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 32236088:37617628 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=2.53 log_scoreRatio_sum=0.47 focal_scoreRatio_sum=1.92
AlnScore=1192 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 q1 +/+ ENSP00000362613 CDX4 q1 q1 254.3 14 37387100 37389654 -1 3 95.4% 51.2% 789 0.7 / 0.54 = 1.3 ortholog_one2one: cdx4 1
p18 q2 +/+ ENSP00000362603 CHIC1 q2 q2 276.3 14 37377724 37384466 -1 5 74.2% 68.4% 579 0.32 / 0.26 = 1.23 ortholog_one2one: Q2YDQ7_DANRE 1
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 4
region4, score=144 region4, score=144 region4, score=144
syntenyRegion: Danio_rerio.glob28.16.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 15879376:20948851 -f 38e5 some_geneID_to_be_selected
scoreRatio_sum=0.99 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.08
AlnScore=144 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 327.4 16 19672360 19686210 1 9 34.3% 38.3% 1398 0.84 / 0.85 = 0.99 noComparaHits: 3
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 5
region5, score=669 region5, score=669 region5, score=669
syntenyRegion: Danio_rerio.glob40.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 9788741:10159355 -f 28e4 some_geneID_to_be_selected
scoreRatio_sum=0.97 log_scoreRatio_sum=-0.02 focal_scoreRatio_sum=0.49
AlnScore=669 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 q1 +/+ ENSP00000362603 CHIC1 q1 q1 251 1 10150483 10159355 1 5 65.4% 72.7% 477 0.32 / 0.33 = 0.97 between_species_paralog: chic2 2
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 6
region6, score=108 region6, score=108 region6, score=108
syntenyRegion: Danio_rerio.glob10.23.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 32891628:37801962 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=0.96 log_scoreRatio_sum=-0.03 focal_scoreRatio_sum=0.06
AlnScore=108 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000362781 NP_001013649.1 q1 q1 141.3 23 37503993 37505159 1 1 52.3% 35% 1167 0.85 / 0.89 = 0.96 between_species_paralog: NHS 2
p4 --- gape ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 7
region7, score=114 region7, score=114 region7, score=114
syntenyRegion: Danio_rerio.glob23.20.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 25234486:30344887 -f 38e5 some_geneID_to_be_selected
scoreRatio_sum=0.95 log_scoreRatio_sum=-0.04 focal_scoreRatio_sum=0.08
AlnScore=114 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 260.2 20 25234486 25324430 1 8 20.8% 44.4% 810 0.84 / 0.88 = 0.95 noComparaHits: dll4 ;
chac1 ;
si:ch211-244p18.3
noData
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 8
region8, score=115 region8, score=115 region8, score=115
syntenyRegion: Danio_rerio.glob26.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 52139145:54664270 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=0.95 log_scoreRatio_sum=-0.04 focal_scoreRatio_sum=0.08
AlnScore=115 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 262.1 6 52697391 52711108 -1 7 26.6% 40.1% 1059 0.84 / 0.88 = 0.95 noComparaHits: noData
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 9
region9, score=116 region9, score=116 region9, score=116
syntenyRegion: Danio_rerio.glob60.Zv7_NA1282.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1282 -i 2848:56196 -f 40e3 some_geneID_to_be_selected
scoreRatio_sum=0.95 log_scoreRatio_sum=-0.04 focal_scoreRatio_sum=0.08
AlnScore=116 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 264.7 Zv7_NA1282 2848 27641 -1 7 31.4% 36.5% 1299 0.84 / 0.88 = 0.95 noComparaHits: rad54l noData
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 10
region10, score=82 region10, score=82 region10, score=82
syntenyRegion: Danio_rerio.glob24.22.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 7676924:13013635 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.08
AlnScore=82 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 186 22 8227653 8238938 1 4 21% 40.6% 813 0.84 / 0.91 = 0.92 noComparaHits: si:dkey-42i9.10 noData
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 11
region11, score=229 region11, score=229 region11, score=229
syntenyRegion: Danio_rerio.glob12.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 4 -i 2467076:7855002 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.46
AlnScore=229 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 q1 +/+ ENSP00000362616 NAP1L2 q1 q1 194.1 4 2477292 2479313 1 4 35.2% 56.1% 501 0.7 / 0.77 = 0.91 ortholog_one2many: nap1l1 1
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 12
region12, score=183 region12, score=183 region12, score=183
syntenyRegion: Danio_rerio.glob47.21.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 41200423:44730509 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=0.86 log_scoreRatio_sum=-0.14 focal_scoreRatio_sum=0.86
AlnScore=183 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 q1 +/+ ENSP00000362613 CDX4 q1 q1 102 21 43615612 43626238 1 2 63.4% 34.8% 510 0.7 / 0.81 = 0.86 between_species_paralog: CDX1 2
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 13
region13, score=765 region13, score=765 region13, score=765
syntenyRegion: Danio_rerio.glob07.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 27051174:32227970 -f 39e5 some_geneID_to_be_selected
scoreRatio_sum=1.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=0.19
AlnScore=765 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 q2 --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 281.4 11 27051174 27104270 -1 9 35.2% 35% 1374 0.84 / 0.87 = 0.97 noComparaHits: Q6DGH4_DANRE 9
--- q2 gapp - - - q2 - - - - - - - - - - - -
p7 --- gapq ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 q3 +/+ ENSP00000362640 PHKA1 q3 q3 1621.1 11 31129087 31174477 -1 27 84.8% 69.3% 3504 0.29 / 0.33 = 0.88 between_species_paralog: LOC556199 2
--- q4 gapp - - - q4 - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 14
region14, score=655 region14, score=655 region14, score=655
syntenyRegion: Danio_rerio.glob11.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 17815416:22308960 -f 34e5 some_geneID_to_be_selected
scoreRatio_sum=0.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=0.11
AlnScore=655 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 q1 +/+ ENSP00000362640 PHKA1 q1 q1 1591.3 21 19825622 19872919 -1 28 88.9% 62.5% 3771 0.29 / 0.34 = 0.85 ortholog_one2many: LOC562402 3
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 15
region15, score=166 region15, score=166 region15, score=166
syntenyRegion: Danio_rerio.glob29.25.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 25 -i 18968435:20662289 -f 13e5 some_geneID_to_be_selected
scoreRatio_sum=0.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=0.43
AlnScore=166 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p16 q2 +/+ ENSP00000362616 NAP1L2 q1,q2 q2 149.4 25 19862063 19862988 -1 3 24.3% 60% 336 0.7 / 0.82 = 0.85 noComparaHits: 4
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 16
region16, score=497 region16, score=497 region16, score=497
syntenyRegion: Danio_rerio.glob34.Zv7_NA817.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA817 -i 4519:5448 -f 70e1 some_geneID_to_be_selected
scoreRatio_sum=0.84 log_scoreRatio_sum=-0.16 focal_scoreRatio_sum=0.12
AlnScore=497 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 q1 +/+ ENSP00000362585 ZCCHC13 q1 q1 170 Zv7_NA817 4519 5448 1 2 80.7% 49.4% 444 0.42 / 0.5 = 0.84 ortholog_many2many: LOC570180 1
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 17
region17, score=789 region17, score=789 region17, score=789
syntenyRegion: Danio_rerio.glob01.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 3937633:9217772 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=2.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.27
AlnScore=789 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 q4 --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 q1 +/+ ENSP00000362674 HDAC8 q1 q1 320.2 14 7732266 8195158 1 10 74.3% 43.1% 987 0.53 / 0.58 = 0.91 between_species_paralog: hdac3 3
p10 --- gapq ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gapq ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gapq ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 q2 +/+ ENSP00000328059 RNF12 q2 q2 320.3 14 7202567 7204408 1 2 91% 40.5% 1746 0.5 / 0.7 = 0.71 noComparaHits: 1
p27 q3 +/+ ENSP00000362567 KIAA2022 q3 q3 307.8 14 7164797 7166500 1 1 39.1% 36.1% 1704 0.95 / 0.88 = 1.08 ortholog_one2one: LOC796115 2
--- q4 gape - - - q4 - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 18
region18, score=397 region18, score=397 region18, score=397
syntenyRegion: Danio_rerio.glob17.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 297949:464916 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.09
AlnScore=397 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gaps ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 q1 +/+ ENSP00000276033 SLC16A2 q1 q1 354.8 20 297949 464916 1 5 52.7% 53% 996 0.42 / 0.6 = 0.7 between_species_paralog: si:ch211-241j12.1 1
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 19
region19, score=237 region19, score=237 region19, score=237
syntenyRegion: Danio_rerio.glob06.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 19316543:20478391 -f 87e4 some_geneID_to_be_selected
scoreRatio_sum=0.66 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=0.07
AlnScore=237 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gaps ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gaps ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gaps ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 q1 +/+ ENSP00000328059 RNF12 q1 q1 260.1 24 20092290 20095366 -1 3 62.5% 42% 1194 0.5 / 0.76 = 0.66 noComparaHits: 2
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 20
region20, score=327 region20, score=327 region20, score=327
syntenyRegion: Danio_rerio.glob15.11.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 417352:2772301 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=0.63 log_scoreRatio_sum=-0.45 focal_scoreRatio_sum=0.09
AlnScore=327 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 q1 +/+ ENSP00000362585 ZCCHC13 q1 q1 112.1 11 1840048 1840251 -1 1 41% 69.6% 204 0.42 / 0.67 = 0.63 ortholog_many2many: ENSDARG00000070922 2
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 21
region21, score=319 region21, score=319 region21, score=319
syntenyRegion: Danio_rerio.glob36.Zv7_NA1092.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1092 -i 19972:91051 -f 53e3 some_geneID_to_be_selected
scoreRatio_sum=0.62 log_scoreRatio_sum=-0.47 focal_scoreRatio_sum=0.09
AlnScore=319 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 q1 +/+ ENSP00000362585 ZCCHC13 q1 q1 109.3 Zv7_NA1092 21167 21379 1 1 42.8% 66.7% 213 0.42 / 0.68 = 0.62 ortholog_many2many: zff9 3
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 22
region22, score=289 region22, score=289 region22, score=289
syntenyRegion: Danio_rerio.glob27.Zv7_NA3324.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3324 -i 98:7702 -f 57e2 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.07
AlnScore=289 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gaps ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 q1 +/+ ENSP00000276033 SLC16A2 q1 q1 258 Zv7_NA3324 98 7702 1 3 32.1% 61.5% 660 0.42 / 0.71 = 0.59 noComparaHits: 2
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 23
region23, score=639 region23, score=639 region23, score=639
syntenyRegion: Danio_rerio.glob43.7.minQN1.fac2.05.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 67428171:68002996 -f 43e4 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.04
AlnScore=639 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 q1 +/+ ENSP00000218432 PIN4 q1 q1 201.4 7 67428171 67432047 1 3 75% 83.3% 363 0.21 / 0.36 = 0.58 ortholog_one2many: zgc:110008 1
p6 --- gape ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 24
region24, score=240 region24, score=240 region24, score=240
syntenyRegion: Danio_rerio.glob39.5.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 1565585:1602109 -f 27e3 some_geneID_to_be_selected
scoreRatio_sum=0.56 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.07
AlnScore=240 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gaps ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 q1 +/+ ENSP00000276033 SLC16A2 q1 q1 214.8 5 1565585 1602109 1 4 35.6% 49.8% 663 0.42 / 0.75 = 0.56 between_species_paralog: SLC16A10 (2 of 2) 3
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 25
region25, score=197 region25, score=197 region25, score=197
syntenyRegion: Danio_rerio.glob31.17.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 19318876:20710334 -f 10e5 some_geneID_to_be_selected
scoreRatio_sum=0.53 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.07
AlnScore=197 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gaps ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 q1 +/+ ENSP00000276033 SLC16A2 q1 q1 176 17 19318876 19329865 -1 5 56.8% 29.6% 1089 0.42 / 0.8 = 0.53 between_species_paralog: slc16a9a 5
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22