Overview on processed synteny regions for C3_GSH2_HUMAN_ENSG00000180613_2e6.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=4756475613.563.233.98Danio_rerio20 20517784 20518810 2 65.8% 73.9% 1 278 ortholog_one2many: gsh2
2region2, score=188018804.150.910.99Danio_rerio1
3region3, score=159515951.82-2.520.44Danio_rerio14
4region4, score=147814782.04-1.470.42Danio_rerio24
5region5, score=142414241.69-0.330.19Danio_rerio7
6region6, score=124612468.432.220.76Danio_rerio20
7region7, score=5075072.72-1.561.47Danio_rerio5 60832994 60833656 1 68.1% 44.1% -1 134.6 between_species_paralog: gsh1
8region8, score=4884881.68-0.370.5Danio_rerio21
9region9, score=4694691.59-0.460.68Danio_rerio14
10region10, score=410410100.25Danio_rerio14
11region11, score=3143141.37-0.760.38Danio_rerio22
12region12, score=3043041.97-1.260.71Danio_rerio10
13region13, score=3033030.94-0.050.31Danio_rerioZv7_NA3207
14region14, score=2992991.97-1.260.7Danio_rerio25
15region15, score=2732730.81-2.730.25Danio_rerio1
16region16, score=2692691.38-0.740.57Danio_rerio8
17region17, score=2532531.95-1.290.7Danio_rerio2
18region18, score=2352351.36-0.770.55Danio_rerio23
19region19, score=2332330.67-2.940.3Danio_rerio9
20region20, score=2322321.39-0.730.34Danio_rerio18
21region21, score=2302301.47-0.610.77Danio_rerio19 10539137 10540084 2 24% 62.7% 1 102 noComparaHits: hoxa3a
22region22, score=2222221.33-0.820.54Danio_rerio7
23region23, score=2032031.91-1.360.68Danio_rerio7
24region24, score=2002001.32-0.830.54Danio_rerio5
25region25, score=1891891.24-0.950.46Danio_rerio17
26region26, score=1861860.65-0.420.33Danio_rerio13
27region27, score=1851851.31-0.840.54Danio_rerio8
28region28, score=1811811.32-0.840.54Danio_rerio6
29region29, score=1781781.31-0.850.53Danio_rerio2
30region30, score=1751752.08-1.10.45Danio_rerio15
31region31, score=1711710.79-0.230.26Danio_rerio10
32region32, score=1701701.31-0.840.54Danio_rerio6
33region33, score=1691691.51-0.550.31Danio_rerio19
34region34, score=1651651.39-0.730.37Danio_rerio13
35region35, score=1611610.78-0.240.26Danio_rerio13
36region36, score=1541540.63-0.450.32Danio_rerioZv7_NA1887
37region37, score=1451451.36-0.780.36Danio_rerio17
38region38, score=1441441.5-0.570.31Danio_rerio20
39region39, score=1341340.76-0.260.25Danio_rerio2
40region40, score=1191190.74-0.290.25Danio_rerio23
41region41, score=1181180.74-0.290.25Danio_rerio8
42region42, score=1181180.74-0.290.25Danio_rerioZv7_scaffold2547
43region43, score=1161160.6-0.50.3Danio_rerio23
44region44, score=1151150.74-0.290.25Danio_rerio20
45region45, score=1141140.6-0.50.3Danio_rerio20
46region46, score=1141140.6-0.50.3Danio_rerio2
47region47, score=1091090.73-0.30.24Danio_rerio8
48region48, score=1061060.73-0.30.24Danio_rerio18
49region49, score=1061060.73-0.30.24Danio_rerioZv7_NA1005
50region50, score=1031030.73-0.30.24Danio_rerioZv7_NA1361
51region51, score=96960.72-0.320.24Danio_rerio11
52region52, score=90900.59-0.520.3Danio_rerio16
53region53, score=89890.58-0.530.29Danio_rerio16
54region54, score=88880.71-0.330.24Danio_rerio2
55region55, score=82820.71-0.330.24Danio_rerio22
56region56, score=79790.58-0.530.29Danio_rerioZv7_NA3755
57region57, score=76760.77-0.250.06Danio_rerio18
58region58, score=73730.71-0.330.24Danio_rerioZv7_NA3308

Data table for reference protein loci

QueryProtein(s)=ENSP00000370771 (contained in p10)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 USP46 ENSP00000226440 ENST00000226440 ENSG00000109189 UBP46_HUMAN 4 53158563 53220041 53171529 -1 9 355 698.4
p2 NM_024534 ENSP00000355331 ENST00000295216 ENSG00000163074 NM_024534 4 53304753 53306444 53305593 -1 1 563 196.3
p3 RASL11B ENSP00000370824 ENST00000381416 ENSG00000128045 NP_076429.1 4 53423432 53426729 53426352 1 4 248 433.7
p4 SCFD2 ENSP00000373593 ENST00000388941 ENSG00000184178 SCFD2_HUMAN 4 53434893 53926865 53874663 -1 9 684 1299.3
p5 FIP1L1 ENSP00000336752 ENST00000337488 ENSG00000145216 FIP1_HUMAN 4 53938763 54020373 53975612 1 18 594 1003.4
p6 LNX1 ENSP00000370784 ENST00000381377 ENSG00000072201 LNX1_HUMAN 4 54021831 54134926 54057199 -1 10 728 1330.2
p7 LOC441016 ENSP00000370782 ENST00000312008 ENSG00000173966 LOC441016 4 54136637 54137311 54136970 1 1 224 414.1
p8 NP_001011538.1 ENSP00000353928 ENST00000334328 ENSG00000186244 NP_001011538.1 4 54547508 54547918 54547709 -1 1 136 263.8
p9 CHIC2 ENSP00000370773 ENST00000381368 ENSG00000109220 CHIC2_HUMAN 4 54571019 54625224 54609954 -1 6 165 311.1
p10 GSH2_HUMAN ENSP00000370771 ENST00000381366 ENSG00000180613 GSH2_HUMAN 4 54661269 54662846 54661722 1 2 304 522.6
p11 PDGFRA ENSP00000257290 ENST00000257290 ENSG00000134853 PGFRA_HUMAN 4 54819693 54856196 54835526 1 22 1089 1946.8
p12 KIT ENSP00000370749 ENST00000381345 ENSG00000157404 KIT_HUMAN 4 55218939 55299480 55286895 1 21 976 1842.8
p13 KDR ENSP00000370742 ENST00000381338 ENSG00000128052 VGFR2_HUMAN 4 55640865 55686217 55663380 -1 30 1356 2607.1
p14 NP_078868.1 ENSP00000318188 ENST00000324691 ENSG00000128039 NP_078868.1 4 55907261 55931015 55925108 1 5 318 636.8
p15 TMEM165 ENSP00000370736 ENST00000381334 ENSG00000134851 TM165_HUMAN 4 55957114 55986376 55978046 1 6 324 540.3
p16 CLOCK ENSP00000370726 ENST00000381325 ENSG00000134852 CLOCK_HUMAN 4 55996339 56043709 56011088 -1 20 846 1498.2
p17 PDCL2 ENSP00000295645 ENST00000295645 ENSG00000163440 PDCL2_HUMAN 4 56117453 56153033 56123518 -1 7 249 462.1
p18 NMU ENSP00000370717 ENST00000381316 ENSG00000109255 NMU_HUMAN 4 56160070 56197116 56170056 -1 9 174 339.7
p19 hCG_2040572 ENSP00000370715 ENST00000381314 ENSG00000205700 hCG_2040572 4 56398008 56398274 56398137 1 1 88 173
p20 EXOC1 ENSP00000370695 ENST00000381295 ENSG00000090989 EXOC1_HUMAN 4 56419247 56465418 56449819 1 18 894 1715.4
p21 CEP135 ENSP00000257287 ENST00000257287 ENSG00000174799 CP135_HUMAN 4 56513054 56585526 56542231 1 24 1140 2011.6
total length of ref-loci (on slice) = 3426964 (34e5)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p16, q10 p16, q11 p16, q12 p16, q13 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p17, q10 p17, q11 p17, q12 p17, q13 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p18, q9 p18, q10 p18, q11 p18, q12 p18, q13 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p19, q9 p19, q10 p19, q11 p19, q12 p19, q13 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p20, q9 p20, q10 p20, q11 p20, q12 p20, q13 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8 p21, q9 p21, q10 p21, q11 p21, q12 p21, q13
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p16, q10 p16, q11 p16, q12 p16, q13 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p17, q10 p17, q11 p17, q12 p17, q13 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p18, q9 p18, q10 p18, q11 p18, q12 p18, q13 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p19, q9 p19, q10 p19, q11 p19, q12 p19, q13 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p20, q9 p20, q10 p20, q11 p20, q12 p20, q13 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8 p21, q9 p21, q10 p21, q11 p21, q12 p21, q13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 1
region1, score=4756 region1, score=4756 region1, score=4756
syntenyRegion: Danio_rerio.glob01.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 20158523:26981491 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=13.56 log_scoreRatio_sum=3.23 focal_scoreRatio_sum=3.98
AlnScore=4756 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 q13 --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B q12 --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000373593 SCFD2 q1 q1 416.1 20 20158523 20202321 -1 3 59.1% 55.1% 1191 1 / 0.67 = 1.49 ortholog_one2one: zgc:110750 (1)
p5 --- gapq ENSP00000336752 FIP1L1 q2 --- - - - - - - - - - - - -
p6 q2 +/+ ENSP00000370784 LNX1 q2 q2 864.6 20 20262299 20328677 -1 10 95.7% 61.6% 2190 0.48 / 0.35 = 1.37 ortholog_one2one: lnx1 1
p7 --- gapq ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 q3 +/+ ENSP00000370771 GSH2_HUMAN q10 q3 278 20 20517784 20518810 1 2 65.8% 73.9% 594 0.57 / 0.46 = 1.24 ortholog_one2many: gsh2 2
p11 q4 +/+ ENSP00000257290 PDGFRA q10 q4 1076.9 20 20538242 20565418 1 17 90% 54.5% 2997 0.53 / 0.44 = 1.2 noComparaHits: pdgfra 2
p12 q5 +/+ ENSP00000370749 KIT q5 q5 810.9 20 20633111 20664343 1 16 75.3% 51% 2343 0.65 / 0.55 = 1.18 noComparaHits: kita 1
p13 q6 +/+ ENSP00000370742 KDR q6 q6 1227.2 20 20725934 20769941 -1 23 74.9% 56.4% 3219 0.58 / 0.52 = 1.12 ortholog_one2one: kdrb 1
p14 q7 +/+ ENSP00000318188 NP_078868.1 q7 q7 276.6 20 20803362 20807944 1 5 89.3% 46% 909 0.63 / 0.56 = 1.12 ortholog_one2one: srd5a2l 1
p15 q8 +/+ ENSP00000370736 TMEM165 q8 q8 357.2 20 20810790 20814789 1 4 71.9% 79.6% 708 0.95 / 0.33 = 2.88 ortholog_one2one: tmem165 1
p16 q9 +/+ ENSP00000370726 CLOCK q9 q9 1072.9 20 20828228 20857826 -1 17 84.3% 70.4% 2376 0.55 / 0.28 = 1.96 ortholog_one2many: clock 1
p17 --- gapq ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
--- q10 gape - - - q10 - - - - - - - - - - - -
--- q11 gape - - - q11 - - - - - - - - - - - -
--- q12 gape - - - q12 - - - - - - - - - - - -
--- q13 gape - - - q13 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 2
region2, score=1880 region2, score=1880 region2, score=1880
syntenyRegion: Danio_rerio.glob03.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 9705364:16540496 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=4.15 log_scoreRatio_sum=0.91 focal_scoreRatio_sum=0.99
AlnScore=1880 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 q1 +/+ ENSP00000336752 FIP1L1 q1 q1 404.5 1 10127196 10144672 1 9 45.5% 67.1% 831 0.9 / 0.59 = 1.53 ortholog_one2many: zgc:103421 1
p6 --- gapq ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 q2 /+ ENSP00000370773 CHIC2 q2 q2 315.9 1 10150420 10159355 1 6 100% 76.7% 612 0.01 / 0.01 = 1 ortholog_one2one: chic2 1
p10 --- gapq ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000257290 PDGFRA q4 --- - - - - - - - - - - - -
p12 --- gapq ENSP00000370749 KIT q4 --- - - - - - - - - - - - -
p13 --- gapq ENSP00000370742 KDR q4 --- - - - - - - - - - - - -
p14 --- gapq ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 q3 /+ ENSP00000370726 CLOCK q3 q3 985.9 1 15317226 15347569 1 17 80.3% 66.7% 2199 0.55 / 0.34 = 1.62 ortholog_one2many: clock3 2
p17 --- gapq ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
--- q4 gape - - - q4 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 3
region3, score=1595 region3, score=1595 region3, score=1595
syntenyRegion: Danio_rerio.glob06.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 35695257:39174722 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=1.82 log_scoreRatio_sum=-2.52 focal_scoreRatio_sum=0.44
AlnScore=1595 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000370784 LNX1 q1 q1 479.1 14 37352211 37369856 1 6 61% 50.9% 1383 0.48 / 0.63 = 0.76 between_species_paralog: zgc:85925 3
p7 --- gapq ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 q2 +/+ ENSP00000370773 CHIC2 q2 q2 280.4 14 37377724 37384490 -1 5 98.8% 63.4% 636 0.01 / 0.09 = 0.11 between_species_paralog: Q2YDQ7_DANRE 2
p10 --- gapq ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000257290 PDGFRA q3 --- - - - - - - - - - - - -
p12 --- gapq ENSP00000370749 KIT q3 --- - - - - - - - - - - - -
p13 q3 +/+ ENSP00000370742 KDR q3 q3 992.1 14 37417093 37461037 -1 22 63.4% 54.6% 2682 0.58 / 0.61 = 0.95 noComparaHits: kdr 3
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 4
region4, score=1478 region4, score=1478 region4, score=1478
syntenyRegion: Danio_rerio.glob02.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 19769891:26615121 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=2.04 log_scoreRatio_sum=-1.47 focal_scoreRatio_sum=0.42
AlnScore=1478 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000226440 USP46 q1 q1 531.3 24 20188764 20199808 -1 6 94.4% 78.9% 1038 0.07 / 0.23 = 0.3 noComparaHits: 3
--- q2 gapp - - - q2 - - - - - - - - - - - -
p2 --- gapq ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 q3 +/+ ENSP00000370784 LNX1 q3 q3 585.9 24 20234496 20259200 -1 7 75.3% 54% 1650 0.48 / 0.55 = 0.87 between_species_paralog: lnx2 2
p7 --- gapq ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000353928 NP_001011538.1 q2 --- - - - - - - - - - - - -
p9 --- gapq ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000257290 PDGFRA q4 --- - - - - - - - - - - - -
p12 --- gapq ENSP00000370749 KIT q4 --- - - - - - - - - - - - -
p13 q4 +/+ ENSP00000370742 KDR q4 q4 844.8 24 20340485 20391286 -1 20 66.4% 47.1% 2802 0.58 / 0.67 = 0.87 noComparaHits: flt1 4
p14 --- gapq ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
--- q5 gape - - - q5 - - - - - - - - - - - -
--- q6 gape - - - q6 - - - - - - - - - - - -
--- q7 gape - - - q7 - - - - - - - - - - - -
--- q8 gape - - - q8 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 5
region5, score=1424 region5, score=1424 region5, score=1424
syntenyRegion: Danio_rerio.glob19.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 49460010:51736510 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=1.69 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.19
AlnScore=1424 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000226440 USP46 q1 q1 628.9 7 50537443 50560015 -1 8 99.7% 81.1% 1212 0.07 / 0.09 = 0.78 noComparaHits: 1
p2 --- gapq ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 q2 +/+ ENSP00000370824 RASL11B q2 q2 228.3 7 50569492 50574512 1 4 85.9% 52.4% 663 0.43 / 0.47 = 0.91 between_species_paralog: zgc:110179 2
p4 --- gape ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000257290 PDGFRA noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000370749 KIT noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000370742 KDR noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 6
region6, score=1246 region6, score=1246 region6, score=1246
syntenyRegion: Danio_rerio.glob08.20.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 27015328:33693642 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=8.43 log_scoreRatio_sum=2.22 focal_scoreRatio_sum=0.76
AlnScore=1246 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000257290 PDGFRA noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000370749 KIT q4 --- - - - - - - - - - - - -
p13 --- gaps ENSP00000370742 KDR q4 --- - - - - - - - - - - - -
p14 --- gaps ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p20 q2 +/+ ENSP00000370695 EXOC1 q2 q2 1465.1 20 27691457 27715842 1 17 96.5% 83.2% 2763 1 / 0.14 = 7.14 ortholog_one2one: exoc1 1
p21 q3 /+ ENSP00000257287 CEP135 q3 q3 898.6 20 27834566 27856937 -1 15 85.5% 47.9% 3123 0.71 / 0.55 = 1.29 ortholog_one2one: Q5RG45_DANRE 1
--- q4 gape - - - q4 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 7
region7, score=507 region7, score=507 region7, score=507
syntenyRegion: Danio_rerio.glob10.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 60832994:67600533 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=2.72 log_scoreRatio_sum=-1.56 focal_scoreRatio_sum=1.47
AlnScore=507 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 q1 /+ ENSP00000370771 GSH2_HUMAN q1 q1 134.6 5 60832994 60833656 -1 1 68.1% 44.1% 663 0.57 / 0.74 = 0.77 between_species_paralog: gsh1 3
p11 q2 +/+ ENSP00000257290 PDGFRA q3 q2 194.4 5 61336667 61351164 1 5 24.5% 35.3% 792 0.53 / 0.9 = 0.59 noComparaHits: ephb4a noData
p12 q3 +/+ ENSP00000370749 KIT q4 q3 197 5 63394460 63417933 1 5 23.2% 41.8% 675 0.65 / 0.89 = 0.73 noComparaHits: ddr2 noData
p13 q4 +/+ ENSP00000370742 KDR q4 q4 186.1 5 67238410 67246094 -1 5 17.5% 40.7% 684 0.58 / 0.92 = 0.63 noComparaHits: LOC100000720 noData
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 8
region8, score=488 region8, score=488 region8, score=488
syntenyRegion: Danio_rerio.glob31.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 29311590:36016531 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.68 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=0.5
AlnScore=488 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000257290 PDGFRA q1 --- - - - - - - - - - - - -
p12 q1 +/+ ENSP00000370749 KIT q1 q1 626.3 21 33964082 33983894 -1 14 68% 45.9% 2040 0.65 / 0.66 = 0.98 noComparaHits: ENSDARG00000053624 3
p13 q2 /+ ENSP00000370742 KDR q1 q2 434.5 21 29826634 29852027 -1 12 32.4% 43.7% 1446 0.58 / 0.83 = 0.7 noComparaHits: fgfr4 noData
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 9
region9, score=469 region9, score=469 region9, score=469
syntenyRegion: Danio_rerio.glob30.14.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 24338288:31084130 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.59 log_scoreRatio_sum=-0.46 focal_scoreRatio_sum=0.68
AlnScore=469 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000257290 PDGFRA q1 q1 747.2 14 25776469 25810659 1 16 70.3% 47.7% 2340 0.53 / 0.61 = 0.87 noComparaHits: pdgfrb2 3
p12 q2 /+ ENSP00000370749 KIT q1 q2 176.2 14 30545879 30570176 -1 4 26.1% 35.2% 777 0.65 / 0.9 = 0.72 noComparaHits: LOC572503 noData
p13 --- gape ENSP00000370742 KDR q1 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 10
region10, score=410 region10, score=410 region10, score=410
syntenyRegion: Danio_rerio.glob07.14.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 6279526:13064240 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=410 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000257290 PDGFRA q1 --- - - - - - - - - - - - -
p12 --- gaps ENSP00000370749 KIT q1 --- - - - - - - - - - - - -
p13 q1 +/+ ENSP00000370742 KDR q1 q1 1069.3 14 11701198 11807647 -1 22 70.6% 50.4% 3141 0.58 / 0.58 = 1 noComparaHits: flt4 2
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 11
region11, score=314 region11, score=314 region11, score=314
syntenyRegion: Danio_rerio.glob34.22.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 8533748:15296151 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.37 log_scoreRatio_sum=-0.76 focal_scoreRatio_sum=0.38
AlnScore=314 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000370784 LNX1 q1 q1 277.2 22 14177023 14573193 -1 9 50.4% 35.8% 1122 0.48 / 0.79 = 0.61 noComparaHits: inadl ;
LOC556075 ;
si:ch211-155o21.1 ;
nfia ;
LOC100003398 ;
LOC797542
4
p7 --- gapq ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000257290 PDGFRA q2 --- - - - - - - - - - - - -
p12 q2 +/+ ENSP00000370749 KIT q2 q2 253.6 22 8533817 8578386 -1 7 33% 35.3% 1005 0.65 / 0.86 = 0.76 noComparaHits: insrb noData
p13 --- gape ENSP00000370742 KDR q2 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 12
region12, score=304 region12, score=304 region12, score=304
syntenyRegion: Danio_rerio.glob05.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 10 -i 307776:4431722 -f 31e5 some_geneID_to_be_selected
scoreRatio_sum=1.97 log_scoreRatio_sum=-1.26 focal_scoreRatio_sum=0.71
AlnScore=304 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000257290 PDGFRA q1 q1 299.9 10 3100574 3166283 -1 7 35.8% 39.3% 1173 0.53 / 0.84 = 0.63 noComparaHits: musk noData
p12 q2 +/+ ENSP00000370749 KIT q1 q2 141.2 10 2982334 2985364 -1 3 13.5% 45.9% 396 0.65 / 0.92 = 0.71 noComparaHits: syk noData
p13 q3 +/+ ENSP00000370742 KDR q1 q3 194.3 10 2825762 2849393 1 3 28% 34.2% 1125 0.58 / 0.92 = 0.63 noComparaHits: noData
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 13
region13, score=303 region13, score=303 region13, score=303
syntenyRegion: Danio_rerio.glob29.Zv7_NA3207.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3207 -i 41053:84661 -f 33e3 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.31
AlnScore=303 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000257290 PDGFRA q1 --- - - - - - - - - - - - -
p12 q1 +/+ ENSP00000370749 KIT q1 q1 558.7 Zv7_NA3207 41059 66922 -1 12 47.6% 54.5% 1518 0.65 / 0.69 = 0.94 noComparaHits: LOC100008185 5
p13 --- gape ENSP00000370742 KDR q1 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 14
region14, score=299 region14, score=299 region14, score=299
syntenyRegion: Danio_rerio.glob48.25.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 25 -i 6631109:13463853 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.97 log_scoreRatio_sum=-1.26 focal_scoreRatio_sum=0.7
AlnScore=299 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000257290 PDGFRA q1 q1 210.7 25 7373432 7411300 1 5 22.7% 42.7% 735 0.53 / 0.89 = 0.6 noComparaHits: si:dkey-18e5.1 noData
p12 q2 +/+ ENSP00000370749 KIT q2 q2 207.4 25 9273161 9321900 1 6 26.2% 39.2% 810 0.65 / 0.88 = 0.74 noComparaHits: met noData
p13 q3 +/+ ENSP00000370742 KDR q2 q3 208.5 25 11610476 11639736 -1 6 18.8% 36.1% 774 0.58 / 0.92 = 0.63 noComparaHits: LOC563480 noData
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 15
region15, score=273 region15, score=273 region15, score=273
syntenyRegion: Danio_rerio.glob35.1.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 27699808:34472485 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.81 log_scoreRatio_sum=-2.73 focal_scoreRatio_sum=0.25
AlnScore=273 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000226440 USP46 q1 q1 145.5 1 34402715 34406180 1 4 63.9% 37.2% 669 0.07 / 0.79 = 0.09 noComparaHits: 5
p2 --- gapq ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000257290 PDGFRA q2 --- - - - - - - - - - - - -
p12 q2 /+ ENSP00000370749 KIT q2 q2 174.6 1 27996694 28011007 1 5 18.8% 38.8% 549 0.65 / 0.9 = 0.72 noComparaHits: LOC100005538 noData
p13 --- gape ENSP00000370742 KDR q2 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 16
region16, score=269 region16, score=269 region16, score=269
syntenyRegion: Danio_rerio.glob39.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 46063094:48952374 -f 22e5 some_geneID_to_be_selected
scoreRatio_sum=1.38 log_scoreRatio_sum=-0.74 focal_scoreRatio_sum=0.57
AlnScore=269 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 /+ ENSP00000257290 PDGFRA q1 q1 327.8 8 46063115 46108517 -1 9 25.3% 52.1% 846 0.53 / 0.83 = 0.64 noComparaHits: fgfr1 noData
p12 q2 +/+ ENSP00000370749 KIT q1 q2 217.6 8 48243137 48391827 1 6 27.3% 38.8% 771 0.65 / 0.88 = 0.74 noComparaHits: CACNA1E ;
ENSDARG00000068034 ;
LOC570636
noData
p13 --- gape ENSP00000370742 KDR q1 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 17
region17, score=253 region17, score=253 region17, score=253
syntenyRegion: Danio_rerio.glob12.2.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 801138:6482396 -f 43e5 some_geneID_to_be_selected
scoreRatio_sum=1.95 log_scoreRatio_sum=-1.29 focal_scoreRatio_sum=0.7
AlnScore=253 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p11 q2 /+ ENSP00000257290 PDGFRA q3 q2 176 2 1409533 1420885 -1 5 18.3% 46.4% 591 0.53 / 0.9 = 0.59 noComparaHits: egfr noData
p12 q3 +/+ ENSP00000370749 KIT q4 q3 195.8 2 3920226 3927018 1 5 24.7% 39.7% 720 0.65 / 0.89 = 0.73 noComparaHits: LOC559428 noData
p13 q4 +/+ ENSP00000370742 KDR q4 q4 198.2 2 4686670 4768803 -1 5 20.6% 36% 837 0.58 / 0.92 = 0.63 noComparaHits: ek3 ;
PCOLCE2 (2 of 2)
noData
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 q1 --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 18
region18, score=235 region18, score=235 region18, score=235
syntenyRegion: Danio_rerio.glob44.23.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 14254254:21047677 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.36 log_scoreRatio_sum=-0.77 focal_scoreRatio_sum=0.55
AlnScore=235 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000257290 PDGFRA q1 q1 246.1 23 15139084 15183524 1 6 34% 35.1% 1125 0.53 / 0.87 = 0.61 noComparaHits: zgc:158791 noData
p12 q2 /+ ENSP00000370749 KIT q1 q2 224.1 23 20208151 20376703 -1 6 29.9% 36.2% 975 0.65 / 0.87 = 0.75 noComparaHits: ENSDARG00000070738 ;
LOC566249 ;
LOC100005960
noData
p13 --- gape ENSP00000370742 KDR q1 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 19
region19, score=233 region19, score=233 region19, score=233
syntenyRegion: Danio_rerio.glob27.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 36282684:43107228 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-2.94 focal_scoreRatio_sum=0.3
AlnScore=233 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 /+ ENSP00000226440 USP46 q1 q1 128.6 9 43106983 43107228 -1 1 23.1% 78.3% 246 0.07 / 0.81 = 0.09 noComparaHits: egfl6 6
p2 --- gapq ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q2 +/+ ENSP00000257290 PDGFRA q2 q2 168.2 9 36857965 36976443 -1 5 31.6% 30.5% 1110 0.53 / 0.91 = 0.58 noComparaHits: ttna noData
p12 --- gape ENSP00000370749 KIT noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000370742 KDR q2 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 20
region20, score=232 region20, score=232 region20, score=232
syntenyRegion: Danio_rerio.glob32.18.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 12410173:18720316 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=1.39 log_scoreRatio_sum=-0.73 focal_scoreRatio_sum=0.34
AlnScore=232 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000257290 PDGFRA q1 --- - - - - - - - - - - - -
p12 q1 +/+ ENSP00000370749 KIT q1 q1 247.3 18 13263223 13293608 1 7 40.3% 31.8% 1206 0.65 / 0.86 = 0.76 noComparaHits: igf1ra noData
p13 --- gapq ENSP00000370742 KDR q1 --- - - - - - - - - - - - -
p14 --- gapq ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 q2 /+ ENSP00000370726 CLOCK q2 q2 174 18 18705597 18720316 1 5 24.8% 39.3% 684 0.55 / 0.88 = 0.63 noComparaHits: arntl2 4
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 21
region21, score=230 region21, score=230 region21, score=230
syntenyRegion: Danio_rerio.glob17.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 9398850:15106665 -f 43e5 some_geneID_to_be_selected
scoreRatio_sum=1.47 log_scoreRatio_sum=-0.61 focal_scoreRatio_sum=0.77
AlnScore=230 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 q1 +/+ ENSP00000370771 GSH2_HUMAN q1 q1 102 19 10539137 10540084 1 2 24% 62.7% 219 0.57 / 0.8 = 0.71 noComparaHits: hoxa3a 4
p11 --- gapq ENSP00000257290 PDGFRA noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000370749 KIT noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000370742 KDR noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 q2 /+ ENSP00000257287 CEP135 q2 q2 125.1 19 13248297 13250963 -1 1 78.9% 20% 2667 0.71 / 0.93 = 0.76 noComparaHits: Q503P9_DANRE noData
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 22
region22, score=222 region22, score=222 region22, score=222
syntenyRegion: Danio_rerio.glob20.7.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 3706937:10149675 -f 48e5 some_geneID_to_be_selected
scoreRatio_sum=1.33 log_scoreRatio_sum=-0.82 focal_scoreRatio_sum=0.54
AlnScore=222 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000257290 PDGFRA q1 q1 221.8 7 7739874 7759904 1 6 25.8% 39.3% 846 0.53 / 0.88 = 0.6 noComparaHits: igf1rb noData
p12 q2 +/+ ENSP00000370749 KIT q1 q2 201.8 7 10071591 10149648 1 6 19.5% 45% 579 0.65 / 0.89 = 0.73 noComparaHits: LOC566739 ;
furina
noData
p13 --- gape ENSP00000370742 KDR q1 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 23
region23, score=203 region23, score=203 region23, score=203
syntenyRegion: Danio_rerio.glob46.7.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 11125263:17651152 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.91 log_scoreRatio_sum=-1.36 focal_scoreRatio_sum=0.68
AlnScore=203 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 /+ ENSP00000257290 PDGFRA q1 q1 156.5 7 15792145 15820485 -1 4 17.2% 35.9% 558 0.53 / 0.91 = 0.58 noComparaHits: ENSDARG00000069493 noData
p12 q2 +/+ ENSP00000370749 KIT q1 q2 160.1 7 17531401 17536268 1 4 19.4% 39.8% 573 0.65 / 0.91 = 0.71 noComparaHits: zgc:154019 noData
p13 q3 /+ ENSP00000370742 KDR q1 q3 132.3 7 17648717 17651077 1 3 10.6% 43.5% 432 0.58 / 0.94 = 0.62 noComparaHits: zgc:113403 ;
zgc:154019
noData
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 24
region24, score=200 region24, score=200 region24, score=200
syntenyRegion: Danio_rerio.glob11.5.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 45286179:52002663 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.83 focal_scoreRatio_sum=0.54
AlnScore=200 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000257290 PDGFRA q1 q1 241.3 5 49177222 49218672 1 6 30.3% 39.6% 963 0.53 / 0.87 = 0.61 noComparaHits: A3KPS2_DANRE noData
p12 q2 /+ ENSP00000370749 KIT q1 q2 159.6 5 50766296 50779181 -1 4 15.9% 46.3% 456 0.65 / 0.91 = 0.71 noComparaHits: A2CES6_DANRE noData
p13 --- gape ENSP00000370742 KDR q1 --- - - - - - - - - - - - -
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21

region 25
region25, score=189 region25, score=189 region25, score=189
syntenyRegion: Danio_rerio.glob22.17.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 7572691:14128345 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.24 log_scoreRatio_sum=-0.95 focal_scoreRatio_sum=0.46
AlnScore=189 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000226440 USP46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000355331 NM_024534 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370824 RASL11B noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000373593 SCFD2 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000336752 FIP1L1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000370784 LNX1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000370782 LOC441016 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000353928 NP_001011538.1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370773 CHIC2 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370771 GSH2_HUMAN noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000257290 PDGFRA q1 q1 198.1 17 13689703 13697721 -1 5 21.1% 41.9% 723 0.53 / 0.89 = 0.6 noComparaHits: ros1 noData
p12 --- gapq ENSP00000370749 KIT q2 --- - - - - - - - - - - - -
p13 q2 +/+ ENSP00000370742 KDR q2 q2 236.2 17 8445712 8522713 1 7 19% 41.7% 777 0.58 / 0.9 = 0.64 noComparaHits: dtk noData
p14 --- gape ENSP00000318188 NP_078868.1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370736 TMEM165 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370726 CLOCK noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000295645 PDCL2 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370717 NMU noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370715 hCG_2040572 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000370695 EXOC1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000257287 CEP135 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1