Overview on processed synteny regions for C2_CDX4_ENSG00000131264_15e5.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=2934293410.342.530.99Danio_rerio7
2region2, score=119211922.530.471.92Danio_rerio14 37387100 37389654 3 95.4% 51.2% -1 254.3 ortholog_one2one: cdx4
3region3, score=9409400.87-1.670.08Danio_rerio6
4region4, score=7897892.7-0.350.27Danio_rerio14
5region5, score=7657651.85-0.150.19Danio_rerio11
6region6, score=6926920.03-3.50.01Danio_rerio8
7region7, score=6696690.97-0.020.49Danio_rerio1
8region8, score=6556550.85-0.150.11Danio_rerio21
9region9, score=6396390.58-0.530.04Danio_rerio7
10region10, score=5435430.47-0.750.04Danio_rerio14
11region11, score=5205202.550.470.22Danio_rerio5
12region12, score=4974970.84-0.160.12Danio_rerioZv7_NA817
13region13, score=4704700.02-3.90.01Danio_rerio19
14region14, score=4674670.09-2.40.01Danio_rerio23
15region15, score=4534530.02-3.90.01Danio_rerio16
16region16, score=4034030.15-1.890.03Danio_rerio5
17region17, score=3973970.7-0.350.09Danio_rerio20
18region18, score=3763761.23-1.120.47Danio_rerio7
19region19, score=3273270.63-0.450.09Danio_rerio11
20region20, score=3193190.62-0.470.09Danio_rerioZv7_NA1092
21region21, score=2952950.01-4.60Danio_rerio17
22region22, score=2892890.59-0.520.07Danio_rerioZv7_NA3324
23region23, score=2842841.51-0.650.15Danio_rerio12
24region24, score=2402400.56-0.570.07Danio_rerio5
25region25, score=2372370.66-0.410.07Danio_rerio24
26region26, score=2292290.91-0.080.46Danio_rerio4
27region27, score=2242241.45-0.730.14Danio_rerio7
28region28, score=2232231.44-0.740.14Danio_rerio8
29region29, score=2002000.53-0.620.07Danio_rerio12
30region30, score=1971970.53-0.620.07Danio_rerio17
31region31, score=1841841.42-0.770.14Danio_rerio7
32region32, score=1831830.86-0.140.86Danio_rerio21 43615612 43626238 2 63.4% 34.8% 1 102 between_species_paralog: CDX1
33region33, score=1741740.51-0.660.06Danio_rerio23
34region34, score=1731730.51-0.660.06Danio_rerio3
35region35, score=1661660.85-0.150.43Danio_rerio25
36region36, score=1621620.51-0.660.06Danio_rerio18
37region37, score=1441440.9900.08Danio_rerio16
38region38, score=1391390.49-0.70.06Danio_rerio5
39region39, score=1161160.95-0.040.08Danio_rerioZv7_NA1282
40region40, score=1151150.95-0.040.08Danio_rerio6
41region41, score=1141140.95-0.040.08Danio_rerio20
42region42, score=1081080.96-0.030.06Danio_rerio23
43region43, score=82820.92-0.070.08Danio_rerio22

Data table for reference protein loci

QueryProtein(s)=ENSP00000362613 (contained in p17)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 RPS26L1 ENSP00000349197 ENST00000356756 ENSG00000196933 RS26L_HUMAN X 71181120 71181467 71181288 1 1 115 222.3
p2 RGAG4 ENSP00000327693 ENST00000327971 ENSG00000183551 RGAG4_HUMAN X 71266406 71268115 71267255 -1 1 569 931
p3 NP_001013649.1 ENSP00000362781 ENST00000373677 ENSG00000204131 NP_001013649.1 X 71275222 71277351 71276281 1 1 709 1297.3
p4 TPT1L_HUMAN ENSP00000324208 ENST00000317148 ENSG00000198359 TPT1L_HUMAN X 71296408 71296827 71296612 1 1 139 256
p5 PIN4 ENSP00000218432 ENST00000218432 ENSG00000102309 PIN4_HUMAN X 71318286 71334101 71333399 1 4 156 314.8
p6 NP_001009954.1 ENSP00000334675 ENST00000334463 ENSG00000186871 NP_060139.2 X 71341589 71375486 71343461 -1 2 1250 2266.9
p7 RPS4X ENSP00000362744 ENST00000316084 ENSG00000198034 RS4X_HUMAN X 71409246 71413770 71410506 -1 7 263 518.2
p8 CITED1 ENSP00000362721 ENST00000373619 ENSG00000125931 CITE1_HUMAN X 71438298 71439444 71438583 -1 2 193 356.1
p9 HDAC8 ENSP00000362674 ENST00000373573 ENSG00000147099 - X 71466629 71709336 71627559 -1 12 378 765.6
p10 PHKA1 ENSP00000362640 ENST00000373539 ENSG00000067177 hCG_18635 X 71717577 71850453 71759778 -1 33 1240 2427.5
p11 CXorf50 ENSP00000348411 ENST00000356102 ENSG00000184911 Q8TAW5_HUMAN X 71914186 71914485 71914330 1 1 99 185.3
p12 CXorf50 ENSP00000334501 ENST00000334036 ENSG00000184911 DMRTC_HUMAN X 71981695 71984934 71983472 1 6 192 354.5
p13 - ENSP00000362624 ENST00000373524 ENSG00000204119 - X 72074828 72075398 72075119 1 3 79 166.5
p14 RBM32B ENSP00000362621 ENST00000373521 ENSG00000184388 NP_001035971.1 X 72140207 72140809 72140504 1 1 200 371.9
p15 NAP1L6 ENSP00000362617 ENST00000373518 ENSG00000204118 XR_017910.1 X 72264123 72264446 72264279 -1 1 107 196.2
p16 NAP1L2 ENSP00000362616 ENST00000373517 ENSG00000186462 NP1L2_HUMAN X 72349671 72351053 72350358 -1 1 460 844.6
p17 CDX4 ENSP00000362613 ENST00000373514 ENSG00000131264 CDX4_HUMAN X 72583815 72591146 72584238 1 3 284 557.3
p18 CHIC1 ENSP00000362603 ENST00000373504 ENSG00000204116 CHIC1_HUMAN X 72699867 72817565 72714014 1 6 217 375
p19 FXYD8 ENSP00000362594 ENST00000373495 ENSG00000182707 FXYD8_HUMAN X 73011628 73012195 73011766 1 2 94 181.2
p20 Q6ZNG4_HUMAN ENSP00000362593 ENST00000373494 ENSG00000204115 Q6ZNG4_HUMAN X 73261751 73263942 73261901 -1 2 102 64.5
p21 USMG5P1 ENSP00000362589 ENST00000373490 ENSG00000204114 - X 73310450 73310626 73310534 1 1 58 112.2
p22 BMP2KL ENSP00000362587 ENST00000373488 ENSG00000204113 Q5H9B9_HUMAN X 73322489 73323715 73323098 1 1 408 757
p23 ZCCHC13 ENSP00000362585 ENST00000373486 ENSG00000187969 ZCH13_HUMAN X 73440827 73441327 73441073 1 1 166 341.9
p24 SLC16A2 ENSP00000276033 ENST00000276033 ENSG00000147100 MOT8_HUMAN X 73557976 73668113 73661037 1 6 613 892
p25 Q9H3B5_HUMAN ENSP00000346698 ENST00000354671 ENSG00000197501 Q9H3B5_HUMAN X 73723418 73723591 73723499 1 1 57 80.8
p26 RNF12 ENSP00000328059 ENST00000332687 ENSG00000131263 RNF12_HUMAN X 73728000 73732537 73728933 -1 3 624 1095.2
p27 KIAA2022 ENSP00000362567 ENST00000373468 ENSG00000050030 K2022_HUMAN X 73875965 73882210 73878837 -1 3 1516 2755.9
total length of ref-loci (on slice) = 2701091 (27e5)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 1
region1, score=2934 region1, score=2934 region1, score=2934
syntenyRegion: Danio_rerio.glob03.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 49033751:51630791 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=10.34 log_scoreRatio_sum=2.53 focal_scoreRatio_sum=0.99
AlnScore=2934 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 q1 /+ ENSP00000362781 NP_001013649.1 q1 q1 300.6 7 50414076 50416133 1 2 81.2% 38.2% 1761 0.85 / 0.76 = 1.12 noComparaHits: 1
p4 --- gapq ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 q2 +/+ ENSP00000362744 RPS4X q2 q2 496.8 7 50250999 50256275 1 6 99.2% 92% 804 0.21 / 0.04 = 5.25 ortholog_one2many: rps4x 1
p8 q3 +/+ ENSP00000362721 CITED1 q3 q3 130.7 7 50245978 50246436 1 1 87% 51.8% 459 0.73 / 0.63 = 1.16 noComparaHits: 1
p9 q4 +/+ ENSP00000362674 HDAC8 q4 q4 529 7 50179948 50212664 1 8 84.4% 69.7% 1056 0.53 / 0.3 = 1.77 ortholog_one2one: hdac8 1
p10 q5 +/+ ENSP00000362640 PHKA1 q5 q5 1742.9 7 50140282 50176672 1 30 96.5% 67.9% 3810 0.29 / 0.28 = 1.04 ortholog_one2many: LOC793016 1
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 2
region2, score=1192 region2, score=1192 region2, score=1192
syntenyRegion: Danio_rerio.glob05.14.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 32236088:37617628 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=2.53 log_scoreRatio_sum=0.47 focal_scoreRatio_sum=1.92
AlnScore=1192 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 q1 +/+ ENSP00000362613 CDX4 q1 q1 254.3 14 37387100 37389654 -1 3 95.4% 51.2% 789 0.7 / 0.54 = 1.3 ortholog_one2one: cdx4 1
p18 q2 +/+ ENSP00000362603 CHIC1 q2 q2 276.3 14 37377724 37384466 -1 5 74.2% 68.4% 579 0.32 / 0.26 = 1.23 ortholog_one2one: Q2YDQ7_DANRE 1
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 3
region3, score=940 region3, score=940 region3, score=940
syntenyRegion: Danio_rerio.glob14.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 35771119:36609028 -f 63e4 some_geneID_to_be_selected
scoreRatio_sum=0.87 log_scoreRatio_sum=-1.67 focal_scoreRatio_sum=0.08
AlnScore=940 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000349197 RPS26L1 q1 q1 191.8 6 36608626 36609028 -1 2 92.2% 78.8% 387 0.05 / 0.13 = 0.38 ortholog_many2many: rps26l 1
p2 --- gapq ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 q2 /+ ENSP00000276033 SLC16A2 q2 q2 121.7 6 35790256 35807454 1 2 53.3% 23.1% 981 0.42 / 0.86 = 0.49 between_species_paralog: LOC556386 noData
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 4
region4, score=789 region4, score=789 region4, score=789
syntenyRegion: Danio_rerio.glob01.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 3937633:9217772 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=2.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.27
AlnScore=789 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 q4 --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 q1 +/+ ENSP00000362674 HDAC8 q1 q1 320.2 14 7732266 8195158 1 10 74.3% 43.1% 987 0.53 / 0.58 = 0.91 between_species_paralog: hdac3 3
p10 --- gapq ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gapq ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gapq ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 q2 +/+ ENSP00000328059 RNF12 q2 q2 320.3 14 7202567 7204408 1 2 91% 40.5% 1746 0.5 / 0.7 = 0.71 noComparaHits: 1
p27 q3 +/+ ENSP00000362567 KIAA2022 q3 q3 307.8 14 7164797 7166500 1 1 39.1% 36.1% 1704 0.95 / 0.88 = 1.08 ortholog_one2one: LOC796115 2
--- q4 gape - - - q4 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 5
region5, score=765 region5, score=765 region5, score=765
syntenyRegion: Danio_rerio.glob07.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 27051174:32227970 -f 39e5 some_geneID_to_be_selected
scoreRatio_sum=1.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=0.19
AlnScore=765 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 q2 --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 281.4 11 27051174 27104270 -1 9 35.2% 35% 1374 0.84 / 0.87 = 0.97 noComparaHits: Q6DGH4_DANRE 9
--- q2 gapp - - - q2 - - - - - - - - - - - -
p7 --- gapq ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 q3 +/+ ENSP00000362640 PHKA1 q3 q3 1621.1 11 31129087 31174477 -1 27 84.8% 69.3% 3504 0.29 / 0.33 = 0.88 between_species_paralog: LOC556199 2
--- q4 gapp - - - q4 - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 6
region6, score=692 region6, score=692 region6, score=692
syntenyRegion: Danio_rerio.glob37.8.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 41171046:41495407 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=0.03 log_scoreRatio_sum=-3.5 focal_scoreRatio_sum=0.01
AlnScore=692 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 q1 +/+ ENSP00000362621 RBM32B q1 q1 257.4 8 41236516 41237333 -1 3 80.5% 69.7% 543 0.01 / 0.3 = 0.03 between_species_paralog: zgc:55855 1
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 7
region7, score=669 region7, score=669 region7, score=669
syntenyRegion: Danio_rerio.glob40.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 9788741:10159355 -f 28e4 some_geneID_to_be_selected
scoreRatio_sum=0.97 log_scoreRatio_sum=-0.02 focal_scoreRatio_sum=0.49
AlnScore=669 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 q1 +/+ ENSP00000362603 CHIC1 q1 q1 251 1 10150483 10159355 1 5 65.4% 72.7% 477 0.32 / 0.33 = 0.97 between_species_paralog: chic2 2
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 8
region8, score=655 region8, score=655 region8, score=655
syntenyRegion: Danio_rerio.glob11.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 17815416:22308960 -f 34e5 some_geneID_to_be_selected
scoreRatio_sum=0.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=0.11
AlnScore=655 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 q1 +/+ ENSP00000362640 PHKA1 q1 q1 1591.3 21 19825622 19872919 -1 28 88.9% 62.5% 3771 0.29 / 0.34 = 0.85 ortholog_one2many: LOC562402 3
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 9
region9, score=639 region9, score=639 region9, score=639
syntenyRegion: Danio_rerio.glob43.7.minQN1.fac2.05.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 67428171:68002996 -f 43e4 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.04
AlnScore=639 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 q1 +/+ ENSP00000218432 PIN4 q1 q1 201.4 7 67428171 67432047 1 3 75% 83.3% 363 0.21 / 0.36 = 0.58 ortholog_one2many: zgc:110008 1
p6 --- gape ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 10
region10, score=543 region10, score=543 region10, score=543
syntenyRegion: Danio_rerio.glob09.14.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 21091270:26261216 -f 39e5 some_geneID_to_be_selected
scoreRatio_sum=0.47 log_scoreRatio_sum=-0.75 focal_scoreRatio_sum=0.04
AlnScore=543 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 q1 +/+ ENSP00000218432 PIN4 q1 q1 171 14 25361270 25363612 1 2 59% 91.5% 276 0.21 / 0.45 = 0.47 ortholog_one2many: PIN4 (2 of 2) 2
p6 --- gape ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4 p27 p27, q1 p27, q2 p27, q3 p27, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 11
region11, score=520 region11, score=520 region11, score=520
syntenyRegion: Danio_rerio.glob02.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 11243216:14865915 -f 27e5 some_geneID_to_be_selected
scoreRatio_sum=2.55 log_scoreRatio_sum=0.47 focal_scoreRatio_sum=0.22
AlnScore=520 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 922.3 5 13462690 13469302 1 3 73.7% 56.4% 2844 0.84 / 0.59 = 1.42 ortholog_one2one: A2BGR3_DANRE 1
p7 --- gapq ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gapq ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gapq ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 q2 +/+ ENSP00000362567 KIAA2022 q2 q2 426.2 5 12668184 12671447 1 4 52.7% 38.3% 2316 0.95 / 0.84 = 1.13 noComparaHits: 1
--- q3 gape - - - q3 - - - - - - - - - - - -
--- q4 gape - - - q4 - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 12
region12, score=497 region12, score=497 region12, score=497
syntenyRegion: Danio_rerio.glob34.Zv7_NA817.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA817 -i 4519:5448 -f 70e1 some_geneID_to_be_selected
scoreRatio_sum=0.84 log_scoreRatio_sum=-0.16 focal_scoreRatio_sum=0.12
AlnScore=497 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 q1 +/+ ENSP00000362585 ZCCHC13 q1 q1 170 Zv7_NA817 4519 5448 1 2 80.7% 49.4% 444 0.42 / 0.5 = 0.84 ortholog_many2many: LOC570180 1
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 13
region13, score=470 region13, score=470 region13, score=470
syntenyRegion: Danio_rerio.glob13.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 22267192:26132700 -f 29e5 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0.01
AlnScore=470 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 q1 +/+ ENSP00000362621 RBM32B q1 q1 174.9 19 25983508 25983939 1 2 52% 73.2% 363 0.01 / 0.52 = 0.02 between_species_paralog: pabpc1b 2
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 14
region14, score=467 region14, score=467 region14, score=467
syntenyRegion: Danio_rerio.glob38.23.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 26296300:27700770 -f 11e5 some_geneID_to_be_selected
scoreRatio_sum=0.09 log_scoreRatio_sum=-2.4 focal_scoreRatio_sum=0.01
AlnScore=467 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000349197 RPS26L1 q1 q1 104 23 27032281 27032457 -1 1 51.3% 91.7% 177 0.05 / 0.53 = 0.09 ortholog_many2many: rps26 2
p2 --- gape ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gape ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 15
region15, score=453 region15, score=453 region15, score=453
syntenyRegion: Danio_rerio.glob32.16.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 47822640:48367016 -f 41e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0.01
AlnScore=453 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p14 q2 +/+ ENSP00000362621 RBM32B q2 q2 172.4 16 48363311 48363703 -1 2 52% 78.4% 327 0.01 / 0.53 = 0.02 between_species_paralog: pabpc1a 3
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 16
region16, score=403 region16, score=403 region16, score=403
syntenyRegion: Danio_rerio.glob04.5.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 29259517:34636502 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=0.15 log_scoreRatio_sum=-1.89 focal_scoreRatio_sum=0.03
AlnScore=403 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 q1 +/+ ENSP00000362587 BMP2KL q1 q1 305.3 5 29259517 29260659 -1 1 100% 50% 1143 0.09 / 0.59 = 0.15 ortholog_one2one: BMP2KL 1
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 17
region17, score=397 region17, score=397 region17, score=397
syntenyRegion: Danio_rerio.glob17.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 297949:464916 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.09
AlnScore=397 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gaps ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 q1 +/+ ENSP00000276033 SLC16A2 q1 q1 354.8 20 297949 464916 1 5 52.7% 53% 996 0.42 / 0.6 = 0.7 between_species_paralog: si:ch211-241j12.1 1
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p27 p27, q1 p27, q2 p27, q3 p27, q4 p27, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 18
region18, score=376 region18, score=376 region18, score=376
syntenyRegion: Danio_rerio.glob16.7.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 30962946:35789353 -f 36e5 some_geneID_to_be_selected
scoreRatio_sum=1.23 log_scoreRatio_sum=-1.12 focal_scoreRatio_sum=0.47
AlnScore=376 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 q1 +/+ ENSP00000362640 PHKA1 q1 q1 558.2 7 35287672 35408180 1 15 46.8% 42.7% 1932 0.29 / 0.77 = 0.38 noComparaHits: 4
p11 --- gapq ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 q2 +/+ ENSP00000362616 NAP1L2 q3,q4 q2 151.4 7 31802393 31803579 1 3 25.4% 59.2% 351 0.7 / 0.82 = 0.85 between_species_paralog: zgc:101613 3
p17 --- gapq ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gapq ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gapq ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gapq ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
--- q3 gape - - - q3 - - - - - - - - - - - -
--- q4 gape - - - q4 - - - - - - - - - - - -
--- q5 gape - - - q5 - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 19
region19, score=327 region19, score=327 region19, score=327
syntenyRegion: Danio_rerio.glob15.11.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 417352:2772301 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=0.63 log_scoreRatio_sum=-0.45 focal_scoreRatio_sum=0.09
AlnScore=327 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 q1 +/+ ENSP00000362585 ZCCHC13 q1 q1 112.1 11 1840048 1840251 -1 1 41% 69.6% 204 0.42 / 0.67 = 0.63 ortholog_many2many: ENSDARG00000070922 2
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 20
region20, score=319 region20, score=319 region20, score=319
syntenyRegion: Danio_rerio.glob36.Zv7_NA1092.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1092 -i 19972:91051 -f 53e3 some_geneID_to_be_selected
scoreRatio_sum=0.62 log_scoreRatio_sum=-0.47 focal_scoreRatio_sum=0.09
AlnScore=319 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 q1 +/+ ENSP00000362585 ZCCHC13 q1 q1 109.3 Zv7_NA1092 21167 21379 1 1 42.8% 66.7% 213 0.42 / 0.68 = 0.62 ortholog_many2many: zff9 3
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2 p27 p27, q1 p27, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 21
region21, score=295 region21, score=295 region21, score=295
syntenyRegion: Danio_rerio.glob30.17.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 413347:2264566 -f 14e5 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=295 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p14 q2 +/+ ENSP00000362621 RBM32B q2 q2 113.8 17 1189254 1189466 1 1 35.5% 80.6% 213 0.01 / 0.69 = 0.01 between_species_paralog: pabpc4 4
p15 --- gape ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 --- gape ENSP00000276033 SLC16A2 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 22
region22, score=289 region22, score=289 region22, score=289
syntenyRegion: Danio_rerio.glob27.Zv7_NA3324.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3324 -i 98:7702 -f 57e2 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.07
AlnScore=289 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gaps ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gaps ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 q1 +/+ ENSP00000276033 SLC16A2 q1 q1 258 Zv7_NA3324 98 7702 1 3 32.1% 61.5% 660 0.42 / 0.71 = 0.59 noComparaHits: 2
p25 --- gape ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gape ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3 p27 p27, q1 p27, q2 p27, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3 p27 p27, q1 p27, q2 p27, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 23
region23, score=284 region23, score=284 region23, score=284
syntenyRegion: Danio_rerio.glob08.12.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 25956944:30953693 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=-0.65 focal_scoreRatio_sum=0.15
AlnScore=284 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000334675 NP_001009954.1 q1 q1 320.1 12 26508836 26525059 -1 9 35.8% 36.6% 1335 0.84 / 0.85 = 0.99 noComparaHits: ENSDARG00000005236 4
p7 --- gapq ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000362621 RBM32B noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000362617 NAP1L6 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000362616 NAP1L2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000362613 CDX4 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000362603 CHIC1 noMatch --- - - - - - - - - - - - -
p19 --- gapq ENSP00000362594 FXYD8 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000362593 Q6ZNG4_HUMAN noMatch --- - - - - - - - - - - - -
p21 --- gapq ENSP00000362589 USMG5P1 noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000362587 BMP2KL noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000362585 ZCCHC13 noMatch --- - - - - - - - - - - - -
p24 q2 +/+ ENSP00000276033 SLC16A2 q2 q2 164.1 12 27015685 27026167 1 3 67.9% 27.8% 1269 0.42 / 0.81 = 0.52 between_species_paralog: LOC565514 6
p25 --- gapq ENSP00000346698 Q9H3B5_HUMAN noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000328059 RNF12 noMatch --- - - - - - - - - - - - -
p27 --- gapq ENSP00000362567 KIAA2022 noMatch --- - - - - - - - - - - - -
--- q3 gape - - - q3 - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1 p16 p16, q1 p17 p17, q1 p18 p18, q1 p19 p19, q1 p20 p20, q1 p21 p21, q1 p22 p22, q1 p23 p23, q1 p24 p24, q1 p25 p25, q1 p26 p26, q1 p27 p27, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26 p27

region 24
region24, score=240 region24, score=240 region24, score=240
syntenyRegion: Danio_rerio.glob39.5.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 1565585:1602109 -f 27e3 some_geneID_to_be_selected
scoreRatio_sum=0.56 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.07
AlnScore=240 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio
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ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000349197 RPS26L1 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000327693 RGAG4 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000362781 NP_001013649.1 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000324208 TPT1L_HUMAN noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000218432 PIN4 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000334675 NP_001009954.1 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000362744 RPS4X noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000362721 CITED1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000362674 HDAC8 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000362640 PHKA1 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000348411 CXorf50 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000334501 CXorf50 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000362624 - noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000362621