Overview on processed synteny regions for C1_CDX2_ENSG00000165556_2e6.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=8343834320.752.494.25Danio_rerio24
2region2, score=229122915.550.250.86Danio_rerio5
3region3, score=192219224.54-0.650.92Danio_rerio20
4region4, score=175717576.761.31.51Danio_rerio14 25691233 25695169 2 23.3% 84.7% -1 134.4 noComparaHits: cdx1a
5region5, score=160516053.730.520.39Danio_rerio7
6region6, score=153715374.120.051.74Danio_rerio14 37387121 37389654 3 68.1% 56.1% -1 217.2 noComparaHits: cdx4
7region7, score=140414044.09-0.060.62Danio_rerio7
8region8, score=111211122.130.130.17Danio_rerio21
9region9, score=110611062.890.730.36Danio_rerio10
10region10, score=108410841.86-1.870.15Danio_rerio19
11region11, score=108310832.67-0.410.29Danio_rerio20
12region12, score=1066106628.443.062.92Danio_rerio10
13region13, score=105510553.02-0.370.49Danio_rerio21
14region14, score=101410142.41-0.650.44Danio_rerio20
15region15, score=8378372.490.380.5Danio_rerio14
16region16, score=7447441.85-0.160.22Danio_rerio22
17region17, score=6716711.93-0.10.23Danio_rerio21
18region18, score=6606602.19-2.910.41Danio_rerio8
19region19, score=5845841.58-0.460.19Danio_rerio2
20region20, score=4794791.84-1.930.45Danio_rerio8
21region21, score=4364362.62-0.50.57Danio_rerio1
22region22, score=4154152.15-1.070.43Danio_rerio2
23region23, score=4134131.41-0.750.34Danio_rerio3
24region24, score=4104101.02-1.70.12Danio_rerio24
25region25, score=4064061.87-0.150.25Danio_rerio15
26region26, score=4024022.54-0.510.57Danio_rerio10
27region27, score=3653651.64-0.390.39Danio_rerio9
28region28, score=3483482.32-0.770.52Danio_rerio2
29region29, score=3473471.13-1.140.15Danio_rerio22
30region30, score=3363361.64-0.390.39Danio_rerio23
31region31, score=3263261.77-0.250.24Danio_rerio11
32region32, score=3183182.31-0.780.51Danio_rerio2
33region33, score=3183180.98-1.850.11Danio_rerio18
34region34, score=3103101.04-1.810.12Danio_rerio19
35region35, score=2952951.68-2.250.43Danio_rerio1
36region36, score=2672671.48-0.60.24Danio_rerio25
37region37, score=2512510.89-1.90.15Danio_rerio17
38region38, score=2372371.62-0.410.38Danio_rerio17
39region39, score=2362361.45-0.640.23Danio_rerio20
40region40, score=2342341.63-0.40.38Danio_rerio6
41region41, score=2182181.07-1.740.3Danio_rerio18
42region42, score=2152150.82-0.190.1Danio_rerio7
43region43, score=2112110.84-2.080.15Danio_rerio9
44region44, score=1991990.8-0.210.1Danio_rerio12
45region45, score=1871870.79-0.230.1Danio_rerio16
46region46, score=1781780.21-1.550.02Danio_rerio11
47region47, score=1781781.53-0.540.42Danio_rerio8
48region48, score=1501500.76-0.260.1Danio_rerio18
49region49, score=1421420.85-2.070.15Danio_rerio11
50region50, score=1411410.72-0.320.14Danio_rerio13
51region51, score=1131130.69-0.360.14Danio_rerio13
52region52, score=1111110.86-0.140.29Danio_rerio16
53region53, score=1041040.69-0.360.14Danio_rerio6
54region54, score=99990.84-0.160.28Danio_rerio24
55region55, score=91910.68-0.380.14Danio_rerio17
56region56, score=89890.67-0.390.13Danio_rerio23
57region57, score=71710.83-0.180.28Danio_rerio1
58region58, score=69690.66-0.410.13Danio_rerio14

Data table for reference protein loci

QueryProtein(s)=ENSP00000370408 (contained in p16)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 TMEM46 ENSP00000313079 ENST00000319420 ENSG00000180730 TMM46_HUMAN 13 25518651 25523113 25519089 -1 2 295 569.8
p2 RNF6 ENSP00000371000 ENST00000381588 ENSG00000127870 RNF6_HUMAN 13 25685961 25691786 25686984 -1 3 685 1268
p3 CDK8 ENSP00000370938 ENST00000381527 ENSG00000132964 CDK8_HUMAN 13 25726779 25876218 25865551 1 13 464 954.9
p4 WASF3 ENSP00000370877 ENST00000381468 ENSG00000132970 WASF3_HUMAN 13 26114408 26157982 26153225 1 8 502 964.3
p5 GPR12 ENSP00000370844 ENST00000381436 ENSG00000132975 GPR12_HUMAN 13 26230960 26231964 26231458 -1 1 334 606
p6 USP12 ENSP00000258451 ENST00000258451 ENSG00000152484 UBP12_HUMAN 13 26541420 26643776 26567750 -1 9 370 749.6
p7 RPL21 ENSP00000346027 ENST00000311549 ENSG00000122026 RL21_HUMAN 13 26725914 26728662 26727487 1 5 160 327.3
p8 RASL11A ENSP00000241463 ENST00000241463 ENSG00000122035 NP_996563.1 13 26743082 26745631 26745263 1 4 242 463.8
p9 GTF3A ENSP00000370532 ENST00000381140 ENSG00000122034 TF3A_HUMAN 13 26896700 26907734 26902730 1 10 422 677.9
p10 MTIF3 ENSP00000370512 ENST00000381120 ENSG00000122033 IF3M_HUMAN 13 26907812 26912585 26912163 -1 3 278 500.3
p11 LNX2 ENSP00000370491 ENST00000381101 ENSG00000139517 LNX2_HUMAN 13 27020472 27053840 27034733 -1 9 690 1337.3
p12 POLR1D ENSP00000302478 ENST00000302979 ENSG00000186184 RPO1D_HUMAN 13 27094121 27095387 27095181 1 2 133 255.5
p13 GSH1 ENSP00000304331 ENST00000302945 ENSG00000169840 GSHI_HUMAN 13 27264828 27266085 27265221 1 2 264 506.1
p14 PDX1 ENSP00000370421 ENST00000381033 ENSG00000139515 PDX1_HUMAN 13 27392276 27396838 27396407 1 2 283 517.3
p15 NR_002162.1 ENSP00000370414 ENST00000381026 ENSG00000180389 NR_002162.1 13 27417397 27417552 27417469 1 1 51 95.2
p16 CDX2 ENSP00000370408 ENST00000381020 ENSG00000165556 CDX2_HUMAN 13 27435252 27441143 27440667 -1 3 313 421.7
p17 LOC646625 ENSP00000333490 ENST00000332715 ENSG00000183463 LOC646625 13 27450252 27460774 27450504 -1 2 171 316.7
p18 FLT3 ENSP00000370369 ENST00000380982 ENSG00000122025 Q05BN8_HUMAN 13 27476189 27572647 27507726 -1 25 998 2000.2
p19 PAN3 ENSP00000370345 ENST00000380958 ENSG00000152520 PAN3_HUMAN 13 27646417 27764659 27738986 1 18 741 1365.2
p20 FLT1 ENSP00000282397 ENST00000282397 ENSG00000102755 VGFR1_HUMAN 13 27775304 27966980 27857125 -1 30 1338 2296
p21 POMP ENSP00000370205 ENST00000380826 ENSG00000132963 - 13 28131322 28150300 28140685 1 7 160 322.8
p22 SLC46A3 ENSP00000370192 ENST00000380814 ENSG00000139508 NP_861450.1 13 28173084 28190135 28185175 -1 6 463 864.5
p23 KIAA0774 ENSP00000255289 ENST00000255289 ENSG00000132938 K0774_HUMAN 13 28496800 28975343 28498867 1 14 1381 2298.8
Q8N642_HUMAN ENSP00000321504 ENST00000323380 ENSG00000179141 Q8N642_HUMAN 13 28957360 28959723 28957441 -1 2 56 118.9
p24 SLC7A1 ENSP00000370128 ENST00000380752 ENSG00000139514 CTR1_HUMAN 13 28986617 29008325 28995501 -1 11 629 1214.1
p25 UBL3 ENSP00000370055 ENST00000380680 ENSG00000122042 UBL3_HUMAN 13 29239392 29321675 29244289 -1 5 117 247
p26 Q5TAE0_HUMAN ENSP00000370014 ENST00000380640 ENSG00000122043 Q5TAE0_HUMAN 13 29410085 29422495 29419810 1 3 90 197.5
total length of ref-loci (on slice) = 3903845 (39e5)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p1, q15 p1, q16 p1, q17 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p2, q15 p2, q16 p2, q17 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p3, q15 p3, q16 p3, q17 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p4, q15 p4, q16 p4, q17 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p5, q15 p5, q16 p5, q17 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p6, q15 p6, q16 p6, q17 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p7, q15 p7, q16 p7, q17 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p8, q15 p8, q16 p8, q17 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p9, q15 p9, q16 p9, q17 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p10, q15 p10, q16 p10, q17 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p11, q15 p11, q16 p11, q17 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p12, q15 p12, q16 p12, q17 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p13, q15 p13, q16 p13, q17 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p14, q15 p14, q16 p14, q17 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14 p15, q15 p15, q16 p15, q17 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p16, q10 p16, q11 p16, q12 p16, q13 p16, q14 p16, q15 p16, q16 p16, q17 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p17, q10 p17, q11 p17, q12 p17, q13 p17, q14 p17, q15 p17, q16 p17, q17 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p18, q9 p18, q10 p18, q11 p18, q12 p18, q13 p18, q14 p18, q15 p18, q16 p18, q17 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p19, q9 p19, q10 p19, q11 p19, q12 p19, q13 p19, q14 p19, q15 p19, q16 p19, q17 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p20, q9 p20, q10 p20, q11 p20, q12 p20, q13 p20, q14 p20, q15 p20, q16 p20, q17 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8 p21, q9 p21, q10 p21, q11 p21, q12 p21, q13 p21, q14 p21, q15 p21, q16 p21, q17 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p22, q8 p22, q9 p22, q10 p22, q11 p22, q12 p22, q13 p22, q14 p22, q15 p22, q16 p22, q17 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p23, q8 p23, q9 p23, q10 p23, q11 p23, q12 p23, q13 p23, q14 p23, q15 p23, q16 p23, q17 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p24, q8 p24, q9 p24, q10 p24, q11 p24, q12 p24, q13 p24, q14 p24, q15 p24, q16 p24, q17 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p25, q8 p25, q9 p25, q10 p25, q11 p25, q12 p25, q13 p25, q14 p25, q15 p25, q16 p25, q17 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7 p26, q8 p26, q9 p26, q10 p26, q11 p26, q12 p26, q13 p26, q14 p26, q15 p26, q16 p26, q17
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p1, q15 p1, q16 p1, q17 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p2, q15 p2, q16 p2, q17 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p3, q15 p3, q16 p3, q17 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p4, q15 p4, q16 p4, q17 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p5, q15 p5, q16 p5, q17 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p6, q15 p6, q16 p6, q17 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p7, q15 p7, q16 p7, q17 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p8, q15 p8, q16 p8, q17 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p9, q15 p9, q16 p9, q17 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p10, q15 p10, q16 p10, q17 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p11, q15 p11, q16 p11, q17 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p12, q15 p12, q16 p12, q17 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p13, q15 p13, q16 p13, q17 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p14, q15 p14, q16 p14, q17 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14 p15, q15 p15, q16 p15, q17 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p16, q10 p16, q11 p16, q12 p16, q13 p16, q14 p16, q15 p16, q16 p16, q17 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p17, q10 p17, q11 p17, q12 p17, q13 p17, q14 p17, q15 p17, q16 p17, q17 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p18, q9 p18, q10 p18, q11 p18, q12 p18, q13 p18, q14 p18, q15 p18, q16 p18, q17 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p19, q9 p19, q10 p19, q11 p19, q12 p19, q13 p19, q14 p19, q15 p19, q16 p19, q17 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p20, q9 p20, q10 p20, q11 p20, q12 p20, q13 p20, q14 p20, q15 p20, q16 p20, q17 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8 p21, q9 p21, q10 p21, q11 p21, q12 p21, q13 p21, q14 p21, q15 p21, q16 p21, q17 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p22, q8 p22, q9 p22, q10 p22, q11 p22, q12 p22, q13 p22, q14 p22, q15 p22, q16 p22, q17 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p23, q8 p23, q9 p23, q10 p23, q11 p23, q12 p23, q13 p23, q14 p23, q15 p23, q16 p23, q17 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p24, q8 p24, q9 p24, q10 p24, q11 p24, q12 p24, q13 p24, q14 p24, q15 p24, q16 p24, q17 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p25, q8 p25, q9 p25, q10 p25, q11 p25, q12 p25, q13 p25, q14 p25, q15 p25, q16 p25, q17 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7 p26, q8 p26, q9 p26, q10 p26, q11 p26, q12 p26, q13 p26, q14 p26, q15 p26, q16 p26, q17
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 1
region1, score=8343 region1, score=8343 region1, score=8343
syntenyRegion: Danio_rerio.glob01.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 18876433:26644414 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=20.75 log_scoreRatio_sum=2.49 focal_scoreRatio_sum=4.25
AlnScore=8343 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 /+ ENSP00000313079 TMEM46 q1 q1 115.6 24 19934916 19935185 1 1 30.2% 61.5% 270 0.64 / 0.79 = 0.81 noComparaHits: 2
p2 q2 +/+ ENSP00000371000 RNF6 q2 q2 533.1 24 20091987 20095369 -1 4 74.6% 58.9% 1491 0.38 / 0.57 = 0.67 noComparaHits: 1
p3 q3 +/+ ENSP00000370938 CDK8 q3 q3 661.2 24 20102374 20123030 1 9 84.5% 84.4% 1170 0.17 / 0.3 = 0.57 ortholog_one2one: cdk8 2
p4 q4 +/+ ENSP00000370877 WASF3 q4 q4 616.9 24 20143972 20165146 1 8 98.6% 65.1% 1524 0.52 / 0.36 = 1.44 ortholog_one2many: zgc:158236 1
p5 q5 +/+ ENSP00000370844 GPR12 q5 q5 459.9 24 20174076 20175098 -1 1 100% 73% 1023 0.41 / 0.24 = 1.71 ortholog_one2one: LOC565609 1
p6 q6 +/+ ENSP00000258451 USP12 q6 q6 657.3 24 20188764 20208020 -1 8 95.7% 86.7% 1137 0.15 / 0.12 = 1.25 noComparaHits: 2
p7 q7 +/+ ENSP00000346027 RPL21 q7 q7 297 24 20210148 20213249 1 5 100% 80.1% 522 0.07 / 0.09 = 0.78 ortholog_one2many: rpl21 1
p8 --- gapq ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 q8 +/+ ENSP00000370532 GTF3A q8 q8 174.8 24 20228554 20230301 1 4 36.5% 45% 468 0.64 / 0.74 = 0.86 ortholog_one2many: zgc:162349 2
p10 --- gapq ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 q9 +/+ ENSP00000370491 LNX2 q9 q9 884.4 24 20234496 20259254 -1 9 99% 67.9% 2043 0.5 / 0.33 = 1.52 ortholog_one2one: lnx2 1
p12 --- gapq ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 q10 +/+ ENSP00000370421 PDX1 q10 q10 230.8 24 20272048 20274096 1 2 82.3% 56.3% 660 0.68 / 0.55 = 1.24 ortholog_one2one: pdx1 1
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 q11 +/+ ENSP00000333490 LOC646625 q11 q11 170.2 24 20275237 20276855 -1 2 98.8% 51.7% 510 0.93 / 0.46 = 2.02 ortholog_one2one: zgc:158663 1
p18 q12 +/+ ENSP00000370369 FLT3 q12 q12 523 24 20280843 20300073 -1 11 41.4% 58.5% 1257 0.76 / 0.73 = 1.04 noComparaHits: ENSDARG00000058503 1
p19 q13 +/+ ENSP00000370345 PAN3 q13 q13 1080.5 24 20311768 20334747 1 15 84.8% 81.3% 2001 0.96 / 0.2 = 4.8 ortholog_one2one: LOC564629 1
p20 q14 +/+ ENSP00000282397 FLT1 q14 q14 1160.5 24 20340494 20392483 -1 23 79.1% 51.4% 3345 0.61 / 0.49 = 1.24 ortholog_one2one: flt1 1
--- q15 gapp - - - q15 - - - - - - - - - - - -
p21 --- gapq ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 q16 +/+ ENSP00000370128 SLC7A1 q16 q16 538.7 24 25110810 25124997 -1 9 82% 48.9% 1692 0.44 / 0.55 = 0.8 noComparaHits: 8
p25 --- gapq ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
--- q17 gape - - - q17 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p22, q8 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p23, q8 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p24, q8 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p25, q8 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7 p26, q8
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p22, q8 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p23, q8 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p24, q8 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p25, q8 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7 p26, q8
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 2
region2, score=2291 region2, score=2291 region2, score=2291
syntenyRegion: Danio_rerio.glob02.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 59863213:67538061 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=5.55 log_scoreRatio_sum=0.25 focal_scoreRatio_sum=0.86
AlnScore=2291 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
--- q2 gaps - - - q2 - - - - - - - - - - - -
--- q3 gaps - - - q3 - - - - - - - - - - - -
p1 --- gapq ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gapq ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 q4 +/+ ENSP00000370877 WASF3 q4 q4 537 5 60929699 60945155 -1 7 75.5% 68.5% 1245 0.52 / 0.44 = 1.18 ortholog_one2many: A2BEV5_DANRE 3
p5 --- gapq ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 q5 +/+ ENSP00000370532 GTF3A q5 q5 204.6 5 60903257 60913761 -1 4 35.1% 60.1% 447 0.64 / 0.69 = 0.93 ortholog_one2many: gtf3aa 1
p10 q6 +/+ ENSP00000370512 MTIF3 q6 q6 155 5 60896739 60901246 1 3 81.7% 37.8% 735 0.48 / 0.69 = 0.7 ortholog_one2one: A2BEV1_DANRE 1
p11 --- gapq ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 q7 +/+ ENSP00000304331 GSH1 q7 q7 330.1 5 60832985 60833802 -1 2 100% 68.8% 741 0.62 / 0.34 = 1.82 ortholog_one2one: gsh1 1
p14 --- gapq ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370369 FLT3 q3 --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000282397 FLT1 q1 --- - - - - - - - - - - - -
p21 --- gapq ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 q8 +/+ ENSP00000370128 SLC7A1 q8 q8 621.2 5 60723263 60738510 1 8 80.4% 56.8% 1677 0.44 / 0.48 = 0.92 noComparaHits: ENSDARG00000067575 6
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p18, q9 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p19, q9 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p20, q9 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8 p21, q9 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p22, q8 p22, q9 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p23, q8 p23, q9 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p24, q8 p24, q9 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p25, q8 p25, q9 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7 p26, q8 p26, q9
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p16, q8 p16, q9 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p17, q8 p17, q9 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p18, q8 p18, q9 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p19, q8 p19, q9 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p20, q8 p20, q9 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p21, q8 p21, q9 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p22, q8 p22, q9 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p23, q8 p23, q9 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p24, q8 p24, q9 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p25, q8 p25, q9 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7 p26, q8 p26, q9
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 3
region3, score=1922 region3, score=1922 region3, score=1922
syntenyRegion: Danio_rerio.glob03.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 18310747:26044316 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=4.54 log_scoreRatio_sum=-0.65 focal_scoreRatio_sum=0.92
AlnScore=1922 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000258451 USP12 q1 q1 536.8 20 24856579 24867393 1 6 92.4% 74.3% 1146 0.15 / 0.28 = 0.54 between_species_paralog: USP46 3
p7 --- gapq ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 q2 +/+ ENSP00000241463 RASL11A q2 q2 218.8 20 24778902 24781117 -1 4 90.9% 47.1% 705 0.63 / 0.52 = 1.21 between_species_paralog: rasl11b 2
--- q3 gapp - - - q3 - - - - - - - - - - - -
p9 --- gapq ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000370491 LNX2 q8 --- - - - - - - - - - - - -
p12 --- gapq ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 q4 /+ ENSP00000304331 GSH1 q4,q7 q4 196.3 20 23237523 23238531 1 2 96.6% 46.5% 702 0.62 / 0.61 = 1.02 between_species_paralog: GSH2_HUMAN (2 of 2) 2
p14 --- gapq ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 q5 /+ ENSP00000370369 FLT3 q6 q5 436.3 20 20730018 20793302 -1 12 37.4% 51.6% 1167 0.76 / 0.78 = 0.97 noComparaHits: kdrb 5
p19 --- gapq ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 q6 +/+ ENSP00000282397 FLT1 q5 q6 533.8 20 20538344 20664346 1 15 44.7% 40.6% 1869 0.61 / 0.76 = 0.8 noComparaHits: kita ;
pdgfra
6
p21 --- gapq ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gapq ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gapq ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gapq ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
--- q7 gape - - - q7 - - - - - - - - - - - -
--- q8 gape - - - q8 - - - - - - - - - - - -
--- q9 gape - - - q9 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 4
region4, score=1757 region4, score=1757 region4, score=1757
syntenyRegion: Danio_rerio.glob08.14.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 21053281:28641906 -f 57e5 some_geneID_to_be_selected
scoreRatio_sum=6.76 log_scoreRatio_sum=1.3 focal_scoreRatio_sum=1.51
AlnScore=1757 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 q1 +/+ ENSP00000370408 CDX2 q1 q1 134.4 14 25691233 25695169 -1 2 23.3% 84.7% 249 0.6 / 0.68 = 0.88 noComparaHits: cdx1a 3
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370369 FLT3 q1 --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 --- gapq ENSP00000282397 FLT1 q1 --- - - - - - - - - - - - -
p21 --- gapq ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 q2 +/+ ENSP00000255289 KIAA0774 q2 q2 177.7 14 26677258 27280282 1 5 17.6% 39.8% 762 0.9 / 0.92 = 0.98 between_species_paralog: zgc:154168 4
ENSP00000321504 Q8N642_HUMAN noMatch NoData NoData NoData NoData NoData NoData NoData NoData NoData noData - noData
--- q3 gapp - - - q3 - - - - - - - - - - - -
p24 q4 +/+ ENSP00000370128 SLC7A1 q6 q4 738.7 14 27324179 27342411 -1 10 82% 63.2% 1821 0.44 / 0.39 = 1.13 between_species_paralog: zgc:103686 4
p25 q5 +/+ ENSP00000370055 UBL3 q5 q5 192.4 14 27819116 27828617 -1 4 90.6% 83% 324 0.83 / 0.22 = 3.77 between_species_paralog: ubl3 2
p26 --- gapq ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
--- q6 gape - - - q6 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 5
region5, score=1605 region5, score=1605 region5, score=1605
syntenyRegion: Danio_rerio.glob23.7.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 49999238:57730010 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=3.73 log_scoreRatio_sum=0.52 focal_scoreRatio_sum=0.39
AlnScore=1605 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000258451 USP12 q1 q1 671.7 7 50537443 50565222 -1 9 100% 80.2% 1302 0.15 / 0.1 = 1.5 noComparaHits: 1
p7 --- gapq ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 q2 +/+ ENSP00000241463 RASL11A q2 q2 262.8 7 50569420 50574512 1 4 97.9% 53.3% 765 0.63 / 0.43 = 1.47 between_species_paralog: zgc:110179 1
--- q3 gapp - - - q3 - - - - - - - - - - - -
p9 q4 +/+ ENSP00000370532 GTF3A q3 q4 105.2 7 57727376 57730010 1 2 48.6% 29.5% 627 0.64 / 0.84 = 0.76 noComparaHits: plag1 noData
p10 --- gape ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370369 FLT3 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000282397 FLT1 noMatch --- - - - - - - - - - - - -
p21 --- gape ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 6
region6, score=1537 region6, score=1537 region6, score=1537
syntenyRegion: Danio_rerio.glob12.14.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 30545891:38314201 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=4.12 log_scoreRatio_sum=0.05 focal_scoreRatio_sum=1.74
AlnScore=1537 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p9 q2 +/+ ENSP00000370532 GTF3A q2 q2 104.1 14 36259188 36261060 1 2 34.8% 33.8% 462 0.64 / 0.84 = 0.76 noComparaHits: zic6 noData
p10 --- gapq ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 q3 /+ ENSP00000370491 LNX2 q3 q3 639.5 14 37352211 37369856 1 8 84.8% 54.4% 1803 0.5 / 0.52 = 0.96 between_species_paralog: zgc:85925 2
p12 --- gapq ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 q4 +/+ ENSP00000370408 CDX2 q4 q4 217.2 14 37387121 37389654 -1 3 68.1% 56.1% 630 0.6 / 0.48 = 1.25 noComparaHits: cdx4 1
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370369 FLT3 q5 --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 q5 +/+ ENSP00000282397 FLT1 q5 q5 1068.2 14 37409941 37463729 -1 23 79% 47.9% 3309 0.61 / 0.53 = 1.15 between_species_paralog: kdr 2
p21 --- gape ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p16, q6 p16, q7 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p17, q6 p17, q7 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p18, q6 p18, q7 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p19, q6 p19, q7 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p20, q6 p20, q7 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p21, q6 p21, q7 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p22, q6 p22, q7 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p23, q6 p23, q7 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p24, q6 p24, q7 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p25, q6 p25, q7 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5 p26, q6 p26, q7
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 7
region7, score=1404 region7, score=1404 region7, score=1404
syntenyRegion: Danio_rerio.glob06.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 9977429:17720197 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=4.09 log_scoreRatio_sum=-0.06 focal_scoreRatio_sum=0.62
AlnScore=1404 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
--- q2 gaps - - - q2 - - - - - - - - - - - -
p1 --- gapq ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gapq ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 q3 +/+ ENSP00000370877 WASF3 q3 q3 605 7 14186572 14210149 1 8 91.6% 61.3% 1602 0.52 / 0.37 = 1.41 between_species_paralog: zgc:109889 2
p5 q4 +/+ ENSP00000370844 GPR12 q4 q4 388.8 7 14231489 14232388 -1 1 91.3% 65% 900 0.41 / 0.35 = 1.17 between_species_paralog: LOC565203 2
p6 --- gapq ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 q5 +/+ ENSP00000370369 FLT3 q5 q5 199.4 7 15792157 16042136 -1 6 32.4% 32.9% 969 0.76 / 0.9 = 0.84 noComparaHits: zgc:103658 ;
si:busm1-194e12.10 ;
SNORD31 ;
zgc:101765 ;
ENSDARG00000069493 ;
SNORD30 ;
SNORD31 ;
LOC562282 ;
SNORD22
noData
--- q6 gapp - - - q6 - - - - - - - - - - - -
p19 --- gapq ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 q7 /+ ENSP00000282397 FLT1 q7 q7 202.1 7 17327736 17605434 1 6 15.5% 42.3% 621 0.61 / 0.91 = 0.67 noComparaHits: zgc:77051 ;
sox19b ;
mpdu1b ;
eif4a1a ;
ENSDARG00000056781 ;
phf23b ;
NP_001077311.1 ;
zgc:154019 ;
her8a ;
LOC563398 ;
ENSDARG00000062294
noData
p21 --- gape ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 8
region8, score=1112 region8, score=1112 region8, score=1112
syntenyRegion: Danio_rerio.glob05.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 33549451:41200638 -f 57e5 some_geneID_to_be_selected
scoreRatio_sum=2.13 log_scoreRatio_sum=0.13 focal_scoreRatio_sum=0.17
AlnScore=1112 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 --- gapq ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gapq ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 q2 +/+ ENSP00000370877 WASF3 q2 q2 500 21 34230837 34244617 1 6 62.7% 75.8% 1002 0.52 / 0.48 = 1.08 between_species_paralog: ENSDARG00000023940 4
p5 q3 +/+ ENSP00000370844 GPR12 q3 q3 363.8 21 34252339 34253316 -1 1 100% 59.1% 978 0.41 / 0.39 = 1.05 between_species_paralog: LOC798654 4
p6 --- gape ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370369 FLT3 q1 --- - - - - - - - - - - - -
p19 --- gape ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000282397 FLT1 q1 --- - - - - - - - - - - - -
p21 --- gape ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 9
region9, score=1106 region9, score=1106 region9, score=1106
syntenyRegion: Danio_rerio.glob07.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 10 -i 14099932:21817155 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=2.89 log_scoreRatio_sum=0.73 focal_scoreRatio_sum=0.36
AlnScore=1106 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000370369 FLT3 noMatch --- - - - - - - - - - - - -
p19 --- gaps ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 --- gaps ENSP00000282397 FLT1 noMatch --- - - - - - - - - - - - -
p21 --- gaps ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
--- q1 gapp - - - q1 - - - - - - - - - - - -
p22 q2 +/+ ENSP00000370192 SLC46A3 q1 q2 349.5 10 15274849 15284977 1 5 90.7% 40.3% 1362 0.78 / 0.59 = 1.32 noComparaHits: 2
p23 --- gapq ENSP00000255289 KIAA0774 q3 --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 q3 +/+ ENSP00000370128 SLC7A1 q3 q3 867 10 15114481 15138694 1 11 95.1% 69.4% 1941 0.44 / 0.28 = 1.57 ortholog_one2many: SLC7A1 (3 of 3) 1
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4 p16 p16, q1 p16, q2 p16, q3 p16, q4 p17 p17, q1 p17, q2 p17, q3 p17, q4 p18 p18, q1 p18, q2 p18, q3 p18, q4 p19 p19, q1 p19, q2 p19, q3 p19, q4 p20 p20, q1 p20, q2 p20, q3 p20, q4 p21 p21, q1 p21, q2 p21, q3 p21, q4 p22 p22, q1 p22, q2 p22, q3 p22, q4 p23 p23, q1 p23, q2 p23, q3 p23, q4 p24 p24, q1 p24, q2 p24, q3 p24, q4 p25 p25, q1 p25, q2 p25, q3 p25, q4 p26 p26, q1 p26, q2 p26, q3 p26, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 10
region10, score=1084 region10, score=1084 region10, score=1084
syntenyRegion: Danio_rerio.glob13.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 40437291:45993585 -f 42e5 some_geneID_to_be_selected
scoreRatio_sum=1.86 log_scoreRatio_sum=-1.87 focal_scoreRatio_sum=0.15
AlnScore=1084 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000370938 CDK8 q1 q1 241.1 19 45249801 45276638 -1 8 57.3% 43.2% 792 0.17 / 0.74 = 0.23 noComparaHits: A1L1X0_DANRE 4
--- q2 gapp - - - q2 - - - - - - - - - - - -
p4 q3 +/+ ENSP00000370877 WASF3 q3 q3 348.6 19 40847653 40860893 -1 6 72.5% 52.5% 1083 0.52 / 0.63 = 0.83 between_species_paralog: zgc:56010 6
p5 q4 +/+ ENSP00000370844 GPR12 q4 q4 292 19 40839240 40840145 1 1 91% 53.1% 906 0.41 / 0.51 = 0.8 between_species_paralog: si:ch211-199g17.3 5
p6 --- gape ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gape ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gape ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gape ENSP00000370369 FLT3 noMatch --- - - - - - - - - - - - -
p19 --- gape ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000282397 FLT1 q2 --- - - - - - - - - - - - -
p21 --- gape ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 11
region11, score=1083 region11, score=1083 region11, score=1083
syntenyRegion: Danio_rerio.glob09.20.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 44773921:51504203 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=2.67 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=0.29
AlnScore=1083 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000370877 WASF3 q1 q1 401.2 20 50442893 50474167 1 7 65.9% 62.4% 981 0.52 / 0.58 = 0.9 between_species_paralog: LOC100001221 5
p5 q2 +/+ ENSP00000370844 GPR12 q2 q2 381.7 20 50493210 50494208 -1 1 100% 60.9% 999 0.41 / 0.37 = 1.11 between_species_paralog: GPR6 3
p6 --- gapq ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370369 FLT3 q3 --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 q3 /+ ENSP00000282397 FLT1 q3 q3 170.6 20 51501254 51504203 1 4 15.8% 38.7% 657 0.61 / 0.92 = 0.66 noComparaHits: si:ch211-122l14.1 noData
p21 --- gape ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2 p16 p16, q1 p16, q2 p17 p17, q1 p17, q2 p18 p18, q1 p18, q2 p19 p19, q1 p19, q2 p20 p20, q1 p20, q2 p21 p21, q1 p21, q2 p22 p22, q1 p22, q2 p23 p23, q1 p23, q2 p24 p24, q1 p24, q2 p25 p25, q1 p25, q2 p26 p26, q1 p26, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 12
region12, score=1066 region12, score=1066 region12, score=1066
syntenyRegion: Danio_rerio.glob37.10.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 10 -i 33214579:36836760 -f 27e5 some_geneID_to_be_selected
scoreRatio_sum=28.44 log_scoreRatio_sum=3.06 focal_scoreRatio_sum=2.92
AlnScore=1066 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gaps ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gaps ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gaps ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gaps ENSP00000370369 FLT3 q1 --- - - - - - - - - - - - -
p19 --- gaps ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 q1 +/+ ENSP00000282397 FLT1 q1 q1 472.2 10 34422513 34588573 1 14 39.4% 43.7% 1626 0.61 / 0.79 = 0.77 noComparaHits: A4JYF3_DANRE ;
zgc:56317 ;
kctd9 ;
march5l
9
p21 --- gapq ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gapq ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gapq ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gapq ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 q2 /+ ENSP00000370055 UBL3 q2 q2 238.6 10 33861633 33902560 -1 5 100% 88% 384 0.83 / 0.03 = 27.67 ortholog_one2one: zgc:77101 1
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 13
region13, score=1055 region13, score=1055 region13, score=1055
syntenyRegion: Danio_rerio.glob45.21.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 25537684:33092075 -f 57e5 some_geneID_to_be_selected
scoreRatio_sum=3.02 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=0.49
AlnScore=1055 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 q1 /+ ENSP00000370844 GPR12 q1 q1 100.6 21 25537684 25538760 1 2 76.6% 29.5% 789 0.41 / 0.83 = 0.49 noComparaHits: adra2db noData
p6 --- gapq ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000370532 GTF3A noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370369 FLT3 q2 --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 q2 +/+ ENSP00000282397 FLT1 q2 q2 584 21 29732826 30753469 -1 19 46.6% 39.6% 2070 0.61 / 0.74 = 0.82 noComparaHits: LOC563734 ;
zgc:158291 ;
zgc:110031 ;
pgk1 ;
zgc:136851 ;
5S_rRNA ;
zgc:158750 ;
SCARNA14 ;
ripply1 ;
zgc:92260 ;
NP_001073472.1 ;
fgfr4 ;
zgc:101754 ;
pgrmc1
5
p21 q3 +/+ ENSP00000370205 POMP q3 q3 219.6 21 33011764 33014662 1 5 96.9% 64% 516 0.53 / 0.31 = 1.71 ortholog_one2one: zgc:92775 1
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3 p16 p16, q1 p16, q2 p16, q3 p17 p17, q1 p17, q2 p17, q3 p18 p18, q1 p18, q2 p18, q3 p19 p19, q1 p19, q2 p19, q3 p20 p20, q1 p20, q2 p20, q3 p21 p21, q1 p21, q2 p21, q3 p22 p22, q1 p22, q2 p22, q3 p23 p23, q1 p23, q2 p23, q3 p24 p24, q1 p24, q2 p24, q3 p25 p25, q1 p25, q2 p25, q3 p26 p26, q1 p26, q2 p26, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 14
region14, score=1014 region14, score=1014 region14, score=1014
syntenyRegion: Danio_rerio.glob24.20.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 16043:3436070 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=2.41 log_scoreRatio_sum=-0.65 focal_scoreRatio_sum=0.44
AlnScore=1014 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000370938 CDK8 q1 q1 739 20 1643968 1754909 -1 12 95% 74.9% 1440 0.17 / 0.22 = 0.77 between_species_paralog: LOC100007294 1
p4 --- gapq ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 q2 /+ ENSP00000370532 GTF3A q2 q2 125.7 20 242461 245985 1 3 48.6% 32.9% 636 0.64 / 0.81 = 0.79 noComparaHits: si:busm1-189a20.4 noData
p10 --- gapq ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000302478 POLR1D noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 q3 +/+ ENSP00000370369 FLT3 q3 q3 203.1 20 16064 23345 1 5 25.5% 42.6% 753 0.76 / 0.89 = 0.85 noComparaHits: LOC567549 noData
p19 --- gape ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 --- gape ENSP00000282397 FLT1 q3 --- - - - - - - - - - - - -
p21 --- gape ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p16 p16, q1 p16, q2 p16, q3 p16, q4 p16, q5 p17 p17, q1 p17, q2 p17, q3 p17, q4 p17, q5 p18 p18, q1 p18, q2 p18, q3 p18, q4 p18, q5 p19 p19, q1 p19, q2 p19, q3 p19, q4 p19, q5 p20 p20, q1 p20, q2 p20, q3 p20, q4 p20, q5 p21 p21, q1 p21, q2 p21, q3 p21, q4 p21, q5 p22 p22, q1 p22, q2 p22, q3 p22, q4 p22, q5 p23 p23, q1 p23, q2 p23, q3 p23, q4 p23, q5 p24 p24, q1 p24, q2 p24, q3 p24, q4 p24, q5 p25 p25, q1 p25, q2 p25, q3 p25, q4 p25, q5 p26 p26, q1 p26, q2 p26, q3 p26, q4 p26, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15 p16 p17 p18 p19 p20 p21 p22 p23 p24 p25 p26

region 15
region15, score=837 region15, score=837 region15, score=837
syntenyRegion: Danio_rerio.glob04.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 5228967:12759861 -f 56e5 some_geneID_to_be_selected
scoreRatio_sum=2.49 log_scoreRatio_sum=0.38 focal_scoreRatio_sum=0.5
AlnScore=837 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370408 (contained in p16)
TargetGenome=Danio_rerio
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000313079 TMEM46 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000371000 RNF6 q2 --- - - - - - - - - - - - -
p3 --- gaps ENSP00000370938 CDK8 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000370877 WASF3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000370844 GPR12 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000258451 USP12 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000346027 RPL21 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000241463 RASL11A noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000370532 GTF3A q3,q4 --- - - - - - - - - - - - -
p10 --- gaps ENSP00000370512 MTIF3 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000370491 LNX2 noMatch --- - - - - - - - - - - - -
p12 q1 +/+ ENSP00000302478 POLR1D q1 q1 135.5 14 5230978 5231921 1 3 78.2% 61.1% 315 0.71 / 0.46 = 1.54 ortholog_one2one: zgc:136449 1
--- q2 gapp - - - q2 - - - - - - - - - - - -
--- q3 gapp - - - q3 - - - - - - - - - - - -
--- q4 gapp - - - q4 - - - - - - - - - - - -
p13 --- gapq ENSP00000304331 GSH1 noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000370421 PDX1 noMatch --- - - - - - - - - - - - -
p15 --- gapq ENSP00000370414 NR_002162.1 noMatch --- - - - - - - - - - - - -
p16 --- gapq ENSP00000370408 CDX2 noMatch --- - - - - - - - - - - - -
p17 --- gapq ENSP00000333490 LOC646625 noMatch --- - - - - - - - - - - - -
p18 --- gapq ENSP00000370369 FLT3 q5 --- - - - - - - - - - - - -
p19 --- gapq ENSP00000370345 PAN3 noMatch --- - - - - - - - - - - - -
p20 q5 +/+ ENSP00000282397 FLT1 q5 q5 806.2 14 11489101 11807686 -1 18 63.2% 44.7% 2796 0.61 / 0.64 = 0.95 noComparaHits: zgc:110426 ;
flt4 ;
dusp1 ;
zgc:114085
4
p21 --- gape ENSP00000370205 POMP noMatch --- - - - - - - - - - - - -
p22 --- gape ENSP00000370192 SLC46A3 noMatch --- - - - - - - - - - - - -
p23 --- gape ENSP00000255289 KIAA0774 noMatch --- - - - - - - - - - - - -
ENSP00000321504 Q8N642_HUMAN noMatch - - - - - - - - - - - -
p24 --- gape ENSP00000370128 SLC7A1 noMatch --- - - - - - - - - - - - -
p25 --- gape ENSP00000370055 UBL3 noMatch --- - - - - - - - - - - - -
p26 --- gape ENSP00000370014 Q5TAE0_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5