Overview on processed synteny regions for HOXB9_ENSG00000170689_2e5.protein.info
Rank | AlnOverview | AlnScore | RatioSum | logRatioSum | focalRatioSum | TargetGenome | chr | startPos | endPos | hitsCount | queryCov | meanIdentity | ori | score | compara |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 12998 | 774 | 52.47 | 212.6 | Homo_sapiens | 17 | 44055264 | 44058630 | 2 | 100% | 99.6% | -1 | 520 | within_species_paralog: HOXB9 | |
2 | 11658 | 292.55 | 32.53 | 120.1 | Macaca_mulatta | 16 | 32852655 | 32856017 | 2 | 100% | 98.8% | -1 | 517 | ortholog_one2one: HOXB9 | |
3 | 10240 | 202.05 | 26.34 | 94.75 | Canis_familiaris | 9 | 28212641 | 28216111 | 2 | 100% | 98.8% | -1 | 518 | ortholog_one2one: 608958 | |
4 | 9660 | 187.2 | 24.67 | 51.52 | Mus_musculus | 11 | 96087632 | 96090946 | 2 | 100% | 81.9% | 1 | 468 | ortholog_one2one: Hoxb9 | |
5 | 7560 | 34.83 | 10.78 | 12.35 | Monodelphis_domestica | 2 | 201204822 | 201208661 | 2 | 100% | 90.4% | -1 | 474 | ortholog_one2one: HOXB9 | |
6 | 5955 | 13.86 | 2.8 | 4.66 | Danio_rerio | 3 | 23019694 | 23022949 | 2 | 100% | 72.7% | -1 | 366 | ortholog_one2many: hoxb9a | |
7 | 5242 | 12.59 | 2.2 | 4.21 | Xenopus_tropicalis | scaffold_334 | 584781 | 589462 | 2 | 98.8% | 64.4% | -1 | 308 | ortholog_one2one: HOXB9 | |
8 | 4398 | 9.29 | -0.97 | 2.55 | Takifugu_rubripes | scaffold_41 | 540967 | 541197 | 1 | 30.8% | 89.6% | 1 | 148 | noComparaHits: NEWSINFRUG00000160069 | |
9 | 4318 | 8.86 | -0.14 | 2.45 | Homo_sapiens | 7 | 27169753 | 27171601 | 2 | 93.2% | 48.4% | -1 | 228.6 | within_species_paralog: HOXA9 | |
10 | 4290 | 9.05 | -0.11 | 2.9 | Tetraodon_nigroviridis | Un_random | 38140058 | 38146583 | 2 | 99.6% | 62.4% | -1 | 312 | noComparaHits: GSTENG00020456001 | |
11 | 4237 | 8.71 | -0.31 | 2.43 | Mus_musculus | 6 | 52153833 | 52155687 | 2 | 94.8% | 49.4% | -1 | 231.8 | between_species_paralog: Hoxa9 | |
12 | 4150 | 8.6 | -0.44 | 2.48 | Xenopus_tropicalis | scaffold_56 | 1415310 | 1416632 | 2 | 81.6% | 56.7% | 1 | 248 | noComparaHits: ENSXETG00000000724 | |
13 | 4053 | 8.41 | -0.67 | 2.38 | Canis_familiaris | 14 | 43293510 | 43295428 | 2 | 93.2% | 49.6% | -1 | 229.4 | between_species_paralog: 482372 | |
14 | 4007 | 9.37 | 1.39 | 3.53 | Bos_taurus | 19 | 31239435 | 31242559 | 2 | 65.2% | 99.4% | -1 | 340 | ortholog_one2one: HOXB9 | |
15 | 3940 | 11.93 | 2.52 | 5.74 | Gallus_gallus | 27 | 3563906 | 3568219 | 2 | 100% | 81.2% | 1 | 429 | ortholog_one2one: HOXB9 | |
16 | 3853 | 8.25 | -0.9 | 2.14 | Monodelphis_domestica | 8 | 293268693 | 293268905 | 1 | 28.4% | 77.5% | 1 | 122 | noComparaHits: HOXA10 | |
17 | 3779 | 8.01 | -1.11 | 2.26 | Oryzias_latipes | 8 | 24308256 | 24308879 | 1 | 70.4% | 48.1% | 1 | 153 | ortholog_one2one: Q3V615_ORYLA | |
18 | 3714 | 8.13 | -1.1 | 2.14 | Gasterosteus_aculeatus | groupXI | 1617567 | 1618178 | 1 | 69.2% | 51.5% | 1 | 169 | noComparaHits: | |
19 | 3648 | 7.72 | -0.29 | 2.25 | Macaca_mulatta | 3 | 99059984 | 99061844 | 2 | 93.2% | 49.6% | 1 | 229.8 | between_species_paralog: HOXA9 | |
20 | 3331 | 7.49 | -1.81 | 2.24 | Gallus_gallus | 2 | 32579722 | 32581455 | 2 | 89.2% | 54.6% | -1 | 248 | between_species_paralog: HXA9_CHICK | |
21 | 3318 | 7.09 | -1.05 | 2.03 | Gasterosteus_aculeatus | groupX | 9901374 | 9902621 | 2 | 66% | 64.1% | -1 | 211 | between_species_paralog: ENSGACG00000007123 | |
22 | 3230 | 6.5 | -0.58 | 1.09 | Bos_taurus | 4 | |||||||||
23 | 3032 | 6.08 | -1.07 | 2.31 | Xenopus_tropicalis | scaffold_226 | 388156 | 390480 | 2 | 75.2% | 62.8% | 1 | 241.1 | noComparaHits: hoxc9 | |
24 | 3010 | 6.46 | -0.58 | 1.81 | Oryzias_latipes | 11 | 10539594 | 10540702 | 2 | 98.4% | 47.9% | -1 | 206.9 | noComparaHits: Q9PTV6_ORYLA | |
25 | 2910 | 6.31 | -0.77 | 1.79 | Takifugu_rubripes | scaffold_12 | 2360033 | 2361166 | 2 | 69.6% | 59.4% | -1 | 203.9 | between_species_paralog: HXA9_FUGRU | |
26 | 2879 | 6.34 | -0.75 | 1.8 | Tetraodon_nigroviridis | 21 | 3012226 | 3013360 | 2 | 69.6% | 58.9% | 1 | 201.9 | between_species_paralog: HOXA9
; GSTENG00017478001 |
|
27 | 2758 | 6.48 | -1.87 | 2.43 | Danio_rerio | 23 | 35676857 | 35678677 | 2 | 98.8% | 49.5% | 1 | 240.1 | between_species_paralog: hoxc9a | |
28 | 2732 | 5.86 | -1.32 | 1.5 | Gasterosteus_aculeatus | contig_2344 | 65926 | 66144 | 1 | 29.2% | 84.9% | -1 | 134 | noComparaHits: | |
29 | 2684 | 5.9 | -1.33 | 2.22 | Gasterosteus_aculeatus | groupXII | 11616265 | 11618032 | 2 | 98.8% | 51% | 1 | 233.7 | between_species_paralog: ENSGACG00000009396 | |
30 | 2542 | 5.14 | -1.02 | 2.13 | Homo_sapiens | 12 | 52680240 | 52682704 | 2 | 80.8% | 55.3% | 1 | 238.6 | within_species_paralog: HOXC9 | |
31 | 2538 | 5.13 | -1.08 | 2.19 | Oryzias_latipes | 7 | 12875582 | 12877173 | 2 | 99.2% | 51.2% | 1 | 240.8 | between_species_paralog: HXC9_ORYLA | |
32 | 2532 | 11.72 | 4.02 | 1.29 | Bos_taurus | 19 | |||||||||
33 | 2530 | 5.52 | -0.5 | 2.09 | Bos_taurus | 2 | 16998559 | 16999927 | 2 | 70.8% | 62.2% | -1 | 239.7 | between_species_paralog: HOXD9 | |
34 | 2529 | 5.12 | -1.08 | 2.15 | Takifugu_rubripes | scaffold_66 | 154997 | 156667 | 2 | 74.8% | 61.6% | -1 | 230.7 | between_species_paralog: HXC9_FUGRU | |
35 | 2496 | 5.48 | -0.55 | 2.07 | Homo_sapiens | 2 | 176695773 | 176697131 | 2 | 74.4% | 60.4% | 1 | 240.1 | within_species_paralog: HOXD9 | |
36 | 2491 | 5.44 | -0.6 | 2.05 | Mus_musculus | 2 | 74498895 | 74500242 | 2 | 70.8% | 62.9% | 1 | 240.1 | between_species_paralog: Hoxd9 | |
37 | 2468 | 5.4 | -0.65 | 2.08 | Monodelphis_domestica | 4 | 187464529 | 187465943 | 2 | 72% | 64.8% | 1 | 252 | between_species_paralog: HOXD9 | |
38 | 2468 | 5.19 | -2.23 | 2.1 | Mus_musculus | 15 | 102809687 | 102812152 | 2 | 80.8% | 55.3% | 1 | 237.8 | between_species_paralog: Hoxc9 | |
39 | 2441 | 5.04 | -1.16 | 2.24 | Tetraodon_nigroviridis | 9 | 4222544 | 4224247 | 2 | 98.8% | 50.6% | 1 | 229.1 | between_species_paralog: HOXC9
; GSTENG00028039001 |
|
40 | 2440 | 5.59 | 0.54 | 1.36 | Danio_rerio | 12 | |||||||||
41 | 2432 | 4.91 | -1.28 | 2.02 | Bos_taurus | 5 | 16811884 | 16814511 | 2 | 80.8% | 55.3% | -1 | 237.8 | between_species_paralog: HOXC9 | |
42 | 2416 | 5.31 | -0.74 | 2.03 | Xenopus_tropicalis | scaffold_163 | 619625 | 620793 | 2 | 77.6% | 58% | -1 | 240.4 | between_species_paralog: HOXD9 | |
43 | 2326 | 5.14 | -0.93 | 1.63 | Danio_rerio | 19 | 13916949 | 13917988 | 2 | 70.4% | 57.5% | 1 | 200.2 | between_species_paralog: hoxa9a | |
44 | 2314 | 4.84 | -1.38 | 1.85 | Canis_familiaris | 27 | 4274772 | 4274990 | 1 | 29.2% | 75.3% | -1 | 124 | noComparaHits: HOXC10 | |
45 | 2194 | 5.03 | -1.09 | 1.71 | Macaca_mulatta | 12 | 39760168 | 39760383 | 1 | 28.8% | 75% | 1 | 122 | noComparaHits: HOXD10 | |
46 | 2146 | 4.13 | -1.07 | 1.82 | Gasterosteus_aculeatus | contig_2643 | 45188 | 46955 | 2 | 98.8% | 51% | -1 | 233.7 | noComparaHits: ENSGACG00000009396 | |
47 | 1984 | 4.75 | -1.42 | 1.67 | Canis_familiaris | 36 | 22958879 | 22959100 | 1 | 29.6% | 89.2% | 1 | 145 | noComparaHits: ENSCAFG00000023404 | |
48 | 1925 | 4.92 | -0.2 | 0.86 | Oryzias_latipes | 19 | |||||||||
49 | 1921 | 4.31 | -2.09 | 1.96 | Macaca_mulatta | 11 | 51098616 | 51101071 | 2 | 98.8% | 45.6% | 1 | 239 | between_species_paralog: HOXC9 | |
50 | 1921 | 4.97 | -0.17 | 0.87 | Takifugu_rubripes | scaffold_130 | |||||||||
51 | 1819 | 4.73 | -0.41 | 0.82 | Tetraodon_nigroviridis | 2 | |||||||||
52 | 1763 | 4.49 | -1.77 | 1.57 | Gallus_gallus | 7 | 17409431 | 17409745 | 1 | 41.2% | 45.7% | -1 | 100 | noComparaHits: NP_997060.1 | |
53 | 1396 | 2.79 | -0.22 | 1.26 | Danio_rerio | 9 | 1580195 | 1581290 | 2 | 100% | 45.3% | -1 | 245 | between_species_paralog: hoxd9a | |
54 | 1343 | 2.67 | -0.34 | 1.14 | Oryzias_latipes | 21 | 24614922 | 24616096 | 2 | 70.4% | 57.4% | 1 | 217.2 | between_species_paralog: HXD9_ORYLA | |
55 | 1332 | 2.65 | -0.36 | 1.12 | Tetraodon_nigroviridis | 2 | 11097829 | 11098947 | 2 | 70% | 54.1% | -1 | 207.5 | between_species_paralog: GSTENG00031462001 | |
56 | 1325 | 2.65 | -0.37 | 1.16 | Gasterosteus_aculeatus | contig_5303 | 254049 | 255336 | 3 | 67.6% | 57.2% | 1 | 219.7 | noComparaHits: Q4VQD4_GASAC | |
57 | 1325 | 2.65 | -0.37 | 1.16 | Gasterosteus_aculeatus | groupXVI | 9814144 | 9815431 | 3 | 67.6% | 57.2% | -1 | 219.7 | between_species_paralog: Q4VQD4_GASAC | |
58 | 1322 | 3.28 | -0.25 | 1.35 | Danio_rerio | 3 | |||||||||
59 | 1316 | 2.65 | -0.36 | 1.14 | Takifugu_rubripes | scaffold_100 | 358383 | 359535 | 2 | 100% | 45.2% | -1 | 214 | between_species_paralog: NEWSINFRUG00000124776 | |
60 | 1270 | 2.94 | -0.06 | 1.37 | Danio_rerio | 16 | 21188212 | 21189738 | 2 | 100% | 48.6% | 1 | 212.5 | between_species_paralog: hoxa9b | |
61 | 1232 | 3.05 | 0.03 | 0.35 | Gasterosteus_aculeatus | contig_9872 | |||||||||
62 | 1145 | 3.35 | -0.78 | 0.55 | Gasterosteus_aculeatus | groupV | |||||||||
63 | 1030 | 2.62 | -0.44 | 1.17 | Gasterosteus_aculeatus | contig_1095 | 43338 | 43568 | 1 | 30.8% | 79.2% | 1 | 133 | noComparaHits: ENSGACG00000008310 | |
64 | 1030 | 2.62 | -0.44 | 1.17 | Gasterosteus_aculeatus | groupXX | 9727578 | 9727808 | 1 | 30.8% | 79.2% | 1 | 133 | between_species_paralog: ENSGACG00000008310 | |
65 | 995 | 2.56 | -0.49 | 1.14 | Takifugu_rubripes | scaffold_48 | 1063099 | 1063329 | 1 | 30.8% | 79.2% | -1 | 134 | between_species_paralog: NEWSINFRUG00000138062 | |
66 | 983 | 2.56 | -0.51 | 1.16 | Oryzias_latipes | 16 | 13131574 | 13131804 | 1 | 30.8% | 77.9% | 1 | 131 | between_species_paralog: Q3V626_ORYLA | |
67 | 938 | 2.34 | -0.79 | 0.3 | Gasterosteus_aculeatus | contig_6417 | |||||||||
68 | 836 | 1.69 | -0.33 | 0.43 | Takifugu_rubripes | scaffold_346 | |||||||||
69 | 823 | 2.01 | -0.08 | 1.14 | Gallus_gallus | Un_random | 27778827 | 27779045 | 1 | 29.2% | 75.3% | -1 | 124 | noComparaHits: 430550 | |
70 | 811 | 1.51 | -0.56 | 0.27 | Gasterosteus_aculeatus | contig_9874 | |||||||||
71 | 780 | 2.3 | -0.8 | 1.06 | Tetraodon_nigroviridis | 8 | 6620995 | 6621225 | 1 | 30.8% | 80.5% | 1 | 135 | between_species_paralog: HOXAb9 | |
72 | 760 | 1.84 | -0.16 | 1.25 | Bos_taurus | 4 | 40177480 | 40179373 | 2 | 94.8% | 49.2% | 1 | 229.6 | between_species_paralog: HOXA9 | |
73 | 703 | 1.83 | 0.6 | 1.83 | Danio_rerio | 24 | 25215421 | 25218683 | 2 | 100% | 72.7% | 1 | 366 | ortholog_one2many: hoxb9a | |
74 | 663 | 1.74 | -0.31 | 1.04 | Gasterosteus_aculeatus | contig_2345 | 4584 | 4796 | 1 | 28.4% | 73.2% | -1 | 117 | noComparaHits: ENSGACG00000007128 | |
75 | 617 | 1.4 | -0.72 | 0.99 | Gasterosteus_aculeatus | contig_9877 | 25719 | 26330 | 1 | 69.2% | 51.5% | -1 | 169 | noComparaHits: | |
76 | 586 | 1.05 | 0.05 | 0.15 | Gasterosteus_aculeatus | contig_9873 | |||||||||
77 | 547 | 1.04 | 0.04 | 0.21 | Takifugu_rubripes | scaffold_3809 | |||||||||
78 | 533 | 1.32 | -0.83 | 0.8 | Oryzias_latipes | 15 | 4374398 | 4374607 | 1 | 28% | 85.7% | -1 | 130 | noComparaHits: Q9PVR1_ORYLA | |
79 | 521 | 1.32 | -0.83 | 0.8 | Gasterosteus_aculeatus | groupVI | 16162361 | 16162570 | 1 | 28% | 84.3% | 1 | 129 | noComparaHits: ENSGACG00000011902 | |
80 | 517 | 1.31 | -0.84 | 0.8 | Takifugu_rubripes | scaffold_39 | 584702 | 584911 | 1 | 28% | 84.3% | 1 | 129 | noComparaHits: Q4VN43_FUGRU | |
81 | 486 | 1.29 | -0.87 | 0.77 | Tetraodon_nigroviridis | 17 | 9576378 | 9576557 | 1 | 24% | 83.3% | 1 | 110 | noComparaHits: GSTENG00018723001
; HOXDb9 |
|
82 | 481 | 1.14 | 0.13 | 0.38 | Takifugu_rubripes | scaffold_3110 | |||||||||
83 | 471 | 1.02 | 0.02 | 1.02 | Danio_rerio | 2 | 12067419 | 12068514 | 2 | 100% | 45.3% | -1 | 245 | between_species_paralog: hoxd9a | |
84 | 454 | 0.98 | -0.01 | 0.98 | Gallus_gallus | Un_random | 20045138 | 20048409 | 2 | 98.8% | 51.5% | -1 | 236.2 | between_species_paralog: HXD9_CHICK | |
85 | 400 | 0.8 | -0.21 | 0.16 | Danio_rerio | 11 | |||||||||
86 | 395 | 0.78 | -0.24 | 0.16 | Monodelphis_domestica | Un | |||||||||
87 | 394 | 0.97 | -0.02 | 0.32 | Gallus_gallus | Un_random | |||||||||
88 | 362 | 0.92 | -0.07 | 0.31 | Danio_rerio | 6 | |||||||||
89 | 345 | 0.77 | -0.25 | 0.1 | Tetraodon_nigroviridis | Un_random | |||||||||
90 | 333 | 0.65 | -0.42 | 0.09 | Gallus_gallus | Un_random | |||||||||
91 | 284 | 0.75 | -0.28 | 0.75 | Takifugu_rubripes | scaffold_4108 | 5966 | 6196 | 1 | 30.8% | 89.6% | 1 | 148 | noComparaHits: NEWSINFRUG00000159744 | |
92 | 283 | 0.61 | -0.48 | 0.09 | Gasterosteus_aculeatus | contig_4903 | |||||||||
93 | 278 | 0.74 | -0.29 | 0.74 | Macaca_mulatta | 1099214175475 | 342 | 563 | 1 | 29.6% | 89.2% | 1 | 145 | noComparaHits: | |
94 | 266 | 0.64 | -0.44 | 0.13 | Gallus_gallus | Un_random | |||||||||
95 | 224 | 0.7 | -0.35 | 0.7 | Tetraodon_nigroviridis | 3 | 679926 | 680150 | 1 | 30% | 72% | -1 | 121 | noComparaHits: GSTENG00031864001 | |
96 | 221 | 0.53 | -0.62 | 0.27 | Tetraodon_nigroviridis | Un_random | |||||||||
97 | 152 | 0.65 | -0.42 | 0.07 | Bos_taurus | 12 | |||||||||
98 | 149 | 0.65 | -0.42 | 0.07 | Mus_musculus | 5 | |||||||||
99 | 146 | 0.65 | -0.42 | 0.07 | Canis_familiaris | 25 | |||||||||
100 | 144 | 0.65 | -0.42 | 0.07 | Gallus_gallus | 1 | |||||||||
101 | 128 | 0.57 | -0.55 | 0.07 | Homo_sapiens | 13 | |||||||||
102 | 125 | 0.57 | -0.55 | 0.07 | Macaca_mulatta | 17 | |||||||||
103 | 122 | 0.57 | -0.55 | 0.07 | Monodelphis_domestica | 4 | |||||||||
104 | 118 | 0.57 | -0.55 | 0.07 | Oryzias_latipes | 2 | |||||||||
105 | 118 | 0.57 | -0.55 | 0.07 | Tetraodon_nigroviridis | 6 |
Data table for reference protein loci
QueryProtein(s)=ENSP00000309439 (contained in p10)QueryGenome=Homo_sapiens
ref-loci | geneName | protID | transID | geneID | protName | chr | startPos | endPos | meanPos | ori | numExons | protLength | selfscore |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | HOXB1 | ENSP00000355140 | ENST00000239174 | ENSG00000120094 | HXB1_HUMAN | 17 | 43961908 | 43963265 | 43962807 | -1 | 2 | 301 | 639 |
p2 | HOXB2 | ENSP00000331741 | ENST00000330070 | ENSG00000173917 | HXB2_HUMAN | 17 | 43975429 | 43977272 | 43975960 | -1 | 2 | 356 | 701 |
p3 | HOXB3 | ENSP00000308252 | ENST00000311626 | ENSG00000120093 | HXB3_HUMAN | 17 | 43982695 | 43984835 | 43983337 | -1 | 2 | 431 | 842 |
p4 | HOXB4 | ENSP00000328928 | ENST00000332503 | ENSG00000182742 | HXB4_HUMAN | 17 | 44009083 | 44010680 | 44010297 | -1 | 2 | 251 | 501 |
p5 | HOXB5 | ENSP00000239151 | ENST00000239151 | ENSG00000120075 | HXB5_HUMAN | 17 | 44024570 | 44026043 | 44025633 | -1 | 2 | 269 | 548 |
p6 | HOXB6 | ENSP00000225648 | ENST00000225648 | ENSG00000108511 | HXB6_HUMAN | 17 | 44028774 | 44030511 | 44030170 | -1 | 2 | 224 | 477 |
p7 | - | ENSP00000365889 | ENST00000376699 | ENSG00000204609 | - | 17 | 44034852 | 44038674 | 44038504 | 1 | 3 | 109 | 215 |
p8 | HOXB7 | ENSP00000239165 | ENST00000239165 | ENSG00000120087 | HXB7_HUMAN | 17 | 44040203 | 44043279 | 44042947 | -1 | 2 | 217 | 440 |
p9 | HOXB8 | ENSP00000239144 | ENST00000239144 | ENSG00000120068 | HXB8_HUMAN | 17 | 44045563 | 44047065 | 44046694 | -1 | 2 | 243 | 514 |
p10 | HOXB9 | ENSP00000309439 | ENST00000311177 | ENSG00000170689 | HXB9_HUMAN | 17 | 44055261 | 44058630 | 44058250 | -1 | 2 | 250 | 520 |
p11 | NP_115767.1 | ENSP00000290294 | ENST00000290294 | ENSG00000159182 | NP_115767.1 | 17 | 44154162 | 44154753 | 44154243 | -1 | 2 | 57 | 55.5 |
p12 | HOXB13 | ENSP00000290295 | ENST00000290295 | ENSG00000159184 | HXB13_HUMAN | 17 | 44159151 | 44160954 | 44160523 | -1 | 2 | 284 | 609 |
p13 | TTLL6 | ENSP00000302547 | ENST00000305326 | ENSG00000170703 | NP_775894.1 | 17 | 44201350 | 44226596 | 44217497 | -1 | 8 | 569 | 1149 |
p14 | Q658K6_HUMAN | ENSP00000365871 | ENST00000376681 | ENSG00000204606 | Q658K6_HUMAN | 17 | 44236656 | 44249439 | 44237177 | -1 | 3 | 185 | 321 |
Parameter used for the loci-alignments
qLoci-Score_CutOff: 100 bitsqLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
region 1 (region 1 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 43961824:44249439 -f 22e4 some_geneID_to_be_selected
scoreRatio_sum=774 log_scoreRatio_sum=52.47 focal_scoreRatio_sum=212.6
AlnScore=12998 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 639 | 17 | 43961911 | 43963265 | -1 | 2 | 100% | 95.9% | 960 | 0.67 / 0.01 = 67 | noComparaHits: HOXB1 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 701 | 17 | 43975432 | 43977272 | -1 | 2 | 100% | 95.8% | 1074 | 0.55 / 0.01 = 55 | within_species_paralog: HOXB2 | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 842 | 17 | 43982698 | 43984835 | -1 | 2 | 100% | 93% | 1293 | 0.5 / 0.01 = 50 | within_species_paralog: HOXB3 | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 501 | 17 | 44009086 | 44010680 | -1 | 2 | 100% | 92.2% | 768 | 0.43 / 0.01 = 43 | within_species_paralog: HOXB4 | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 548 | 17 | 44024573 | 44026043 | -1 | 2 | 100% | 100% | 807 | 0.4 / 0.01 = 40 | within_species_paralog: HOXB5 | 1 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 477 | 17 | 44028777 | 44030511 | -1 | 2 | 100% | 98.3% | 690 | 0.47 / 0.01 = 47 | within_species_paralog: HOXB6 | 1 |
p7 | q7 | +/+ | ENSP00000365889 | - | q7 | q7 | 215 | 17 | 44036275 | 44038671 | 1 | 2 | 95.4% | 78.4% | 411 | 1 / 0.01 = 100 | noComparaHits: HOXB6
; ENSG00000204609 |
1 |
p8 | q8 | +/+ | ENSP00000239165 | HOXB7 | q8 | q8 | 440 | 17 | 44040218 | 44043279 | -1 | 2 | 98.2% | 96.4% | 660 | 0.42 / 0.01 = 42 | within_species_paralog: HOXB7 | 1 |
p9 | q9 | +/+ | ENSP00000239144 | HOXB8 | q9 | q9 | 514 | 17 | 44045566 | 44047065 | -1 | 2 | 100% | 89.4% | 849 | 0.41 / 0.01 = 41 | within_species_paralog: HOXB8 | 1 |
p10 | q10 | +/+ | ENSP00000309439 | HOXB9 | q10 | q10 | 520 | 17 | 44055264 | 44058630 | -1 | 2 | 100% | 99.6% | 750 | 0.53 / 0.01 = 53 | within_species_paralog: HOXB9 | 1 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q11 | +/+ | ENSP00000290295 | HOXB13 | q11 | q11 | 609 | 17 | 44159154 | 44160954 | -1 | 2 | 100% | 93.3% | 936 | 0.58 / 0.01 = 58 | within_species_paralog: HOXB13 | 1 |
p13 | q12 | +/+ | ENSP00000302547 | TTLL6 | q12 | q12 | 1149 | 17 | 44201353 | 44223966 | -1 | 7 | 97.5% | 98.2% | 1713 | 0.78 / 0.01 = 78 | within_species_paralog: TTLL6 | 1 |
p14 | q13 | +/+ | ENSP00000365871 | Q658K6_HUMAN | q13 | q13 | 321 | 17 | 44236659 | 44237431 | -1 | 2 | 96.2% | 87.4% | 540 | 1 / 0.01 = 100 | noComparaHits: Q658K6_HUMAN | 1 |
region 2 (region 1 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 16 -i 32758343:33041955 -f 21e4 some_geneID_to_be_selected
scoreRatio_sum=292.55 log_scoreRatio_sum=32.53 focal_scoreRatio_sum=120.1
AlnScore=11658 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 601 | 16 | 32758430 | 32759792 | -1 | 2 | 100% | 92.9% | 927 | 0.67 / 0.05 = 13.4 | ortholog_one2one: HOXB1 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 397 | 16 | 32771906 | 32772592 | -1 | 1 | 64% | 86.5% | 687 | 0.55 / 0.43 = 1.28 | noComparaHits: ENSMMUG00000022211 | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 731 | 16 | 32779070 | 32781189 | -1 | 2 | 81.2% | 97.1% | 1050 | 0.5 / 0.13 = 3.85 | noComparaHits: | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 432 | 16 | 32806478 | 32807983 | -1 | 2 | 88.4% | 89.4% | 681 | 0.43 / 0.13 = 3.31 | ortholog_one2one: HOXB4 | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 546 | 16 | 32821961 | 32823429 | -1 | 2 | 100% | 99.6% | 807 | 0.4 / 0.01 = 40 | ortholog_one2one: HOXB5 | 1 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 472 | 16 | 32826127 | 32827850 | -1 | 2 | 100% | 97% | 690 | 0.47 / 0.01 = 47 | ortholog_one2one: HOXB6 | 1 |
p7 | q7 | +/+ | ENSP00000365889 | - | q7 | q7 | 183.2 | 16 | 32833634 | 32836028 | 1 | 2 | 95.4% | 69.6% | 399 | 1 / 0.14 = 7.14 | noComparaHits: HOXB6 | 1 |
p8 | q8 | +/+ | ENSP00000239165 | HOXB7 | q8 | q8 | 426 | 16 | 32837563 | 32840308 | -1 | 2 | 96.8% | 84.2% | 759 | 0.42 / 0.03 = 14 | ortholog_one2one: HOXB7 | 1 |
p9 | q9 | +/+ | ENSP00000239144 | HOXB8 | q9 | q9 | 513 | 16 | 32842608 | 32844111 | -1 | 2 | 100% | 100% | 729 | 0.41 / 0.01 = 41 | ortholog_one2one: HOXB8 | 1 |
p10 | q10 | +/+ | ENSP00000309439 | HOXB9 | q10 | q10 | 517 | 16 | 32852655 | 32856017 | -1 | 2 | 100% | 98.8% | 750 | 0.53 / 0.01 = 53 | ortholog_one2one: HOXB9 | 1 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q11 | +/+ | ENSP00000290295 | HOXB13 | q11 | q11 | 606 | 16 | 32951569 | 32953359 | -1 | 2 | 100% | 95% | 909 | 0.58 / 0.01 = 58 | ortholog_one2one: HOXB13 | 1 |
p13 | q12 | +/+ | ENSP00000302547 | TTLL6 | q12 | q12 | 909 | 16 | 32995240 | 33016834 | -1 | 6 | 86.6% | 86.8% | 1521 | 0.78 / 0.2 = 3.9 | ortholog_one2one: Q24KA4_MACMU | 1 |
p14 | q13 | +/+ | ENSP00000365871 | Q658K6_HUMAN | q13 | q13 | 270 | 16 | 33028950 | 33029720 | -1 | 2 | 95.7% | 75.7% | 525 | 1 / 0.15 = 6.67 | ortholog_one2one: Q658K6_HUMAN | 1 |
region 3 (region 1 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 9 -i 28119456:28360233 -f 18e4 some_geneID_to_be_selected
scoreRatio_sum=202.05 log_scoreRatio_sum=26.34 focal_scoreRatio_sum=94.75
AlnScore=10240 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 563 | 9 | 28119786 | 28121196 | -1 | 2 | 100% | 83% | 987 | 0.67 / 0.11 = 6.09 | ortholog_one2one: 491052 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 515 | 9 | 28131323 | 28133190 | -1 | 2 | 100% | 73.9% | 1071 | 0.55 / 0.26 = 2.12 | ortholog_one2one: HOXB2 | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 755 | 9 | 28138727 | 28140950 | -1 | 2 | 93.5% | 89.3% | 1209 | 0.5 / 0.1 = 5 | noComparaHits: ENSCAFG00000016845 | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 475 | 9 | 28165646 | 28167383 | -1 | 3 | 88% | 97.3% | 672 | 0.43 / 0.05 = 8.6 | ortholog_one2one: HOXB4 | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 546 | 9 | 28181544 | 28183107 | -1 | 2 | 100% | 99.6% | 807 | 0.4 / 0.01 = 40 | ortholog_one2one: 491056 | 1 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 464 | 9 | 28185792 | 28187509 | -1 | 2 | 100% | 97.3% | 672 | 0.47 / 0.02 = 23.5 | ortholog_one2one: 491056 | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 423 | 9 | 28197371 | 28200188 | -1 | 2 | 96.8% | 93.1% | 651 | 0.42 / 0.03 = 14 | ortholog_one2one: 608962 | 1 |
p9 | q8 | +/+ | ENSP00000239144 | HOXB8 | q8 | q8 | 512 | 9 | 28202523 | 28204191 | -1 | 2 | 100% | 96.5% | 765 | 0.41 / 0.01 = 41 | ortholog_one2one: 491059 | 1 |
p10 | q9 | +/+ | ENSP00000309439 | HOXB9 | q9 | q9 | 518 | 9 | 28212641 | 28216111 | -1 | 2 | 100% | 98.8% | 750 | 0.53 / 0.01 = 53 | ortholog_one2one: 608958 | 1 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 533 | 9 | 28285962 | 28287966 | -1 | 2 | 98.2% | 88.7% | 852 | 0.58 / 0.12 = 4.83 | ortholog_one2one: 491060 | 1 |
p13 | q11 | +/+ | ENSP00000302547 | TTLL6 | q11 | q11 | 779.3 | 9 | 28326304 | 28348175 | -1 | 7 | 97.9% | 68.6% | 1758 | 0.78 / 0.32 = 2.44 | ortholog_one2one: TTLL6 | 1 |
p14 | q12 | +/+ | ENSP00000365871 | Q658K6_HUMAN | q12 | q12 | 100 | 9 | 28360009 | 28360233 | -1 | 1 | 40.5% | 66.7% | 225 | 1 / 0.68 = 1.47 | noComparaHits: TTLL6 | 1 |
region 4 (region 1 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 11 -i 95949846:96183226 -f 18e4 some_geneID_to_be_selected
scoreRatio_sum=187.2 log_scoreRatio_sum=24.67 focal_scoreRatio_sum=51.52
AlnScore=9660 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 537 | 11 | 96181917 | 96183226 | 1 | 2 | 100% | 84.6% | 906 | 0.67 / 0.15 = 4.47 | ortholog_one2one: Hoxb1 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 550 | 11 | 96167901 | 96169716 | 1 | 2 | 100% | 78.2% | 1077 | 0.55 / 0.21 = 2.62 | ortholog_one2one: HXB2_MOUSE | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 823 | 11 | 96160339 | 96162486 | 1 | 2 | 93.5% | 95.8% | 1206 | 0.5 / 0.02 = 25 | ortholog_one2one: Hoxb3 | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 466 | 11 | 96134860 | 96136415 | 1 | 2 | 100% | 87.8% | 759 | 0.43 / 0.06 = 7.17 | ortholog_one2one: Hoxb4 | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 541 | 11 | 96119704 | 96121224 | 1 | 2 | 100% | 98.9% | 807 | 0.4 / 0.01 = 40 | ortholog_one2one: Hoxb5 | 1 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 468 | 11 | 96115267 | 96117015 | 1 | 2 | 100% | 97.8% | 672 | 0.47 / 0.01 = 47 | ortholog_one2one: Hoxb6 | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 409 | 11 | 96102818 | 96105681 | 1 | 2 | 94.5% | 94.2% | 618 | 0.42 / 0.07 = 6 | ortholog_one2one: Hoxb7 | 1 |
p9 | q8 | +/+ | ENSP00000239144 | HOXB8 | q8 | q8 | 507 | 11 | 96099053 | 96100557 | 1 | 2 | 100% | 98.4% | 729 | 0.41 / 0.01 = 41 | ortholog_one2one: Hoxb8 | 1 |
p10 | q9 | +/+ | ENSP00000309439 | HOXB9 | q9 | q9 | 468 | 11 | 96087632 | 96090946 | 1 | 2 | 100% | 81.9% | 843 | 0.53 / 0.1 = 5.3 | ortholog_one2one: Hoxb9 | 1 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 560 | 11 | 96010533 | 96012316 | 1 | 2 | 100% | 93% | 858 | 0.58 / 0.08 = 7.25 | ortholog_one2one: Hoxb13 | 1 |
p13 | q11 | +/+ | ENSP00000302547 | TTLL6 | q11 | q11 | 495.7 | 11 | 95961474 | 95972886 | 1 | 5 | 70.1% | 60.1% | 1218 | 0.78 / 0.56 = 1.39 | ortholog_one2one: Ttll6 | 1 |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 5 (region 1 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 2 -i 201105049:201431522 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=34.83 log_scoreRatio_sum=10.78 focal_scoreRatio_sum=12.35
AlnScore=7560 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 466 | 2 | 201105049 | 201106545 | -1 | 2 | 100% | 72.6% | 930 | 0.67 / 0.27 = 2.48 | ortholog_one2one: HOXB1 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 520 | 2 | 201116099 | 201118103 | -1 | 2 | 99.4% | 73.5% | 1122 | 0.55 / 0.25 = 2.2 | ortholog_one2one: HOXB2 | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 765 | 2 | 201123983 | 201126209 | -1 | 2 | 100% | 85% | 1293 | 0.5 / 0.09 = 5.56 | ortholog_one2one: HOXB3 | 1 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q5 | +/+ | ENSP00000328928 | HOXB4 | q5 | q5 | 259 | 2 | 201154627 | 201155052 | -1 | 1 | 60.6% | 80.3% | 426 | 0.43 / 0.48 = 0.9 | ortholog_one2one: HOXB4 | 1 |
p5 | q6 | +/+ | ENSP00000239151 | HOXB5 | q6 | q6 | 491 | 2 | 201170725 | 201172260 | -1 | 2 | 100% | 90% | 801 | 0.4 / 0.1 = 4 | ortholog_one2one: HOXB5 | 1 |
p6 | q7 | +/+ | ENSP00000225648 | HOXB6 | q7 | q7 | 415 | 2 | 201175565 | 201177388 | -1 | 2 | 100% | 86.6% | 669 | 0.47 / 0.12 = 3.92 | ortholog_one2one: HOXB6 | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q8 | +/+ | ENSP00000239165 | HOXB7 | q8 | q8 | 381 | 2 | 201188149 | 201191355 | -1 | 2 | 98.6% | 82.4% | 663 | 0.42 / 0.13 = 3.23 | ortholog_one2one: HOXB7 | 1 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q7,q8 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q9 | +/+ | ENSP00000309439 | HOXB9 | q9 | q9 | 474 | 2 | 201204822 | 201208661 | -1 | 2 | 100% | 90.4% | 744 | 0.53 / 0.08 = 6.63 | ortholog_one2one: HOXB9 | 1 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 531 | 2 | 201363757 | 201365724 | -1 | 2 | 100% | 81.8% | 906 | 0.58 / 0.12 = 4.83 | ortholog_one2one: HOXB13 | 1 |
p13 | q11 | +/+ | ENSP00000302547 | TTLL6 | q11 | q11 | 311 | 2 | 201427539 | 201431522 | -1 | 3 | 34.8% | 68.2% | 642 | 0.78 / 0.72 = 1.08 | ortholog_one2one: TTLL6 | 1 |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 6 (region 1 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 22929828:23046057 -f 87e3 some_geneID_to_be_selected
scoreRatio_sum=13.86 log_scoreRatio_sum=2.8 focal_scoreRatio_sum=4.66
AlnScore=5955 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 244 | 3 | 22929837 | 22931513 | -1 | 2 | 98.3% | 48.1% | 936 | 0.67 / 0.61 = 1.1 | noComparaHits: hoxb1a | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 356 | 3 | 22946170 | 22948177 | -1 | 2 | 96.1% | 57% | 1125 | 0.55 / 0.49 = 1.12 | ortholog_one2one: hoxb2a | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 576 | 3 | 22952393 | 22954315 | -1 | 2 | 94.9% | 68.4% | 1242 | 0.5 / 0.31 = 1.61 | ortholog_one2one: hoxb3a | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 314 | 3 | 22976965 | 22978642 | -1 | 2 | 100% | 61.8% | 744 | 0.43 / 0.37 = 1.16 | ortholog_one2one: hoxb4a | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 406 | 3 | 22991224 | 22992663 | -1 | 2 | 100% | 73.8% | 858 | 0.4 / 0.25 = 1.6 | ortholog_one2one: hoxb5a | 1 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 318 | 3 | 22995009 | 22996746 | -1 | 2 | 100% | 69.3% | 687 | 0.47 / 0.33 = 1.42 | ortholog_one2many: hoxb6a | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 139 | 3 | 23004698 | 23004952 | -1 | 1 | 39.2% | 75.3% | 255 | 0.42 / 0.68 = 0.62 | ortholog_one2many: hoxb7a | 1 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q9 | +/+ | ENSP00000239144 | HOXB8 | q9 | q9 | 408 | 3 | 23010684 | 23012162 | -1 | 2 | 99.2% | 78.9% | 723 | 0.41 / 0.2 = 2.05 | ortholog_one2many: hoxb8a | 1 |
p10 | q10 | +/+ | ENSP00000309439 | HOXB9 | q10 | q10 | 366 | 3 | 23019694 | 23022949 | -1 | 2 | 100% | 72.7% | 759 | 0.53 / 0.29 = 1.83 | ortholog_one2many: hoxb9a | 1 |
--- | q11 | gapp | - | - | - | q11 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q12 | +/+ | ENSP00000290295 | HOXB13 | q12 | q12 | 344 | 3 | 23044786 | 23046057 | -1 | 2 | 94.7% | 63.2% | 828 | 0.58 / 0.43 = 1.35 | between_species_paralog: hoxb13a | 1 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 7 (region 1 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_334 -i 486967:589462 -f 77e3 some_geneID_to_be_selected
scoreRatio_sum=12.59 log_scoreRatio_sum=2.2 focal_scoreRatio_sum=4.21
AlnScore=5242 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 273 | scaffold_334 | 486967 | 489038 | -1 | 2 | 99.3% | 51.9% | 933 | 0.67 / 0.57 = 1.18 | noComparaHits: ENSXETG00000021964 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 352 | scaffold_334 | 505842 | 508165 | -1 | 2 | 99.4% | 57.3% | 1014 | 0.55 / 0.49 = 1.12 | noComparaHits: ENSXETG00000027353 | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 506 | scaffold_334 | 512901 | 514755 | -1 | 2 | 93.3% | 64.7% | 1137 | 0.5 / 0.39 = 1.28 | ortholog_one2one: hoxb3 | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 268 | scaffold_334 | 533018 | 534165 | -1 | 2 | 96.8% | 58.4% | 678 | 0.43 / 0.46 = 0.93 | ortholog_one2one: hoxb4 | 2 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 363 | scaffold_334 | 546778 | 548144 | -1 | 2 | 100% | 71% | 774 | 0.4 / 0.33 = 1.21 | ortholog_one2one: HOXB5 | 1 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 344 | scaffold_334 | 550361 | 552753 | -1 | 2 | 100% | 73.7% | 669 | 0.47 / 0.27 = 1.74 | noComparaHits: ENSXETG00000021987 | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 153 | scaffold_334 | 560611 | 560865 | -1 | 1 | 39.2% | 82.4% | 255 | 0.42 / 0.65 = 0.65 | noComparaHits: ENSXETG00000027351 | 2 |
p9 | q8 | +/+ | ENSP00000239144 | HOXB8 | q8 | q8 | 447 | scaffold_334 | 572876 | 573865 | -1 | 2 | 99.6% | 82.9% | 768 | 0.41 / 0.13 = 3.15 | noComparaHits: ENSXETG00000021993 | 1 |
--- | q9 | gapp | - | - | - | q9 | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q10 | +/+ | ENSP00000309439 | HOXB9 | q10 | q10 | 308 | scaffold_334 | 584781 | 589462 | -1 | 2 | 98.8% | 64.4% | 705 | 0.53 / 0.4 = 1.33 | ortholog_one2one: HOXB9 | 1 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 8 (region 1 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_41 -i 501893:661547 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=9.29 log_scoreRatio_sum=-0.97 focal_scoreRatio_sum=2.55
AlnScore=4398 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 139 | scaffold_41 | 661200 | 661535 | 1 | 1 | 35.9% | 70.8% | 336 | 0.67 / 0.78 = 0.86 | noComparaHits: Q6IEI1_FUGRU | 3 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 340 | scaffold_41 | 642967 | 645472 | 1 | 2 | 99.4% | 50.6% | 1260 | 0.55 / 0.51 = 1.08 | ortholog_one2one: Q6IEI0_FUGRU | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 480 | scaffold_41 | 633502 | 637089 | 1 | 2 | 97% | 58.1% | 1434 | 0.5 / 0.42 = 1.19 | ortholog_one2one: Q6IEH9_FUGRU | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 296 | scaffold_41 | 601559 | 603710 | 1 | 2 | 92% | 62.9% | 687 | 0.43 / 0.4 = 1.08 | ortholog_one2one: HXB4_FUGRU | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 283 | scaffold_41 | 584309 | 586617 | 1 | 2 | 82.2% | 66.3% | 714 | 0.4 / 0.48 = 0.83 | ortholog_one2one: NEWSINFRUG00000136624 | 2 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 261 | scaffold_41 | 578118 | 580641 | 1 | 2 | 100% | 55.4% | 825 | 0.47 / 0.45 = 1.04 | ortholog_one2many: NEWSINFRUG00000165134 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q6 | q7 | 110 | scaffold_41 | 555309 | 555488 | 1 | 1 | 27.6% | 81.7% | 180 | 0.42 / 0.75 = 0.56 | noComparaHits: NEWSINFRUG00000136620 | 9 |
p9 | q8 | +/+ | ENSP00000239144 | HOXB8 | q8 | q8 | 236 | scaffold_41 | 550793 | 551224 | 1 | 1 | 58% | 77.8% | 432 | 0.41 / 0.54 = 0.76 | ortholog_one2one: NEWSINFRUG00000136620 | 2 |
p10 | q9 | +/+ | ENSP00000309439 | HOXB9 | q9 | q9 | 148 | scaffold_41 | 540967 | 541197 | 1 | 1 | 30.8% | 89.6% | 231 | 0.53 / 0.71 = 0.75 | noComparaHits: NEWSINFRUG00000160069 | 5 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 295 | scaffold_41 | 501893 | 503547 | 1 | 2 | 93.3% | 56.7% | 861 | 0.58 / 0.51 = 1.14 | ortholog_one2many: NEWSINFRUG00000163355 | 1 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 9 (region 2 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 7 -i 27100587:27251451 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=8.86 log_scoreRatio_sum=-0.14 focal_scoreRatio_sum=2.45
AlnScore=4318 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 210.3 | 7 | 27100608 | 27102056 | -1 | 2 | 100% | 42.3% | 987 | 0.67 / 0.67 = 1 | noComparaHits: HOXA1 | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 311 | 7 | 27106885 | 27108644 | -1 | 2 | 94.1% | 52.2% | 1059 | 0.55 / 0.55 = 1 | within_species_paralog: HOXA2 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 418 | 7 | 27114062 | 27116784 | -1 | 2 | 100% | 49.6% | 1443 | 0.5 / 0.5 = 1 | within_species_paralog: HOXA3 | 2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 264.4 | 7 | 27135444 | 27136877 | -1 | 2 | 96.8% | 47.9% | 915 | 0.43 / 0.47 = 0.91 | within_species_paralog: HOXA4 | 3 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 325 | 7 | 27147982 | 27149751 | -1 | 2 | 100% | 60.3% | 816 | 0.4 / 0.4 = 1 | within_species_paralog: HOXA5 | 2 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 249 | 7 | 27151805 | 27153893 | -1 | 2 | 100% | 53.5% | 756 | 0.47 / 0.47 = 1 | within_species_paralog: HOXA6 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 253 | 7 | 27161074 | 27162689 | -1 | 2 | 100% | 57.4% | 678 | 0.42 / 0.42 = 1 | within_species_paralog: HOXA7 | 2 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q8 | +/+ | ENSP00000309439 | HOXB9 | q8 | q8 | 228.6 | 7 | 27169753 | 27171601 | -1 | 2 | 93.2% | 48.4% | 750 | 0.53 / 0.56 = 0.95 | within_species_paralog: HOXA9 | 4 |
--- | q9 | gapp | - | - | - | q9 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 250 | 7 | 27204345 | 27205792 | -1 | 2 | 77.8% | 55.9% | 714 | 0.58 / 0.58 = 1 | within_species_paralog: HOXA13 | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 10 (region 1 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 38028407:38178153 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=9.05 log_scoreRatio_sum=-0.11 focal_scoreRatio_sum=2.9
AlnScore=4290 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 124 | Un_random | 38028407 | 38028751 | -1 | 1 | 35.9% | 62.6% | 345 | 0.67 / 0.8 = 0.84 | noComparaHits: GSTENG00005035001
; HOXB1 |
2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 325 | Un_random | 38041366 | 38043918 | -1 | 2 | 97.5% | 50% | 1212 | 0.55 / 0.53 = 1.04 | ortholog_one2many: HOXBa2
; GSTENG00020451001 |
1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 471.6 | Un_random | 38049854 | 38053272 | -1 | 3 | 97.7% | 56.7% | 1458 | 0.5 / 0.43 = 1.16 | between_species_paralog: HOXB3 | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 303 | Un_random | 38083032 | 38085184 | -1 | 2 | 92% | 65.1% | 705 | 0.43 / 0.39 = 1.1 | ortholog_one2one: HOXB4 | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 316 | Un_random | 38101271 | 38103594 | -1 | 2 | 100% | 58% | 951 | 0.4 / 0.42 = 0.95 | ortholog_one2many: HOXB5
; GSTENG00020455001 |
2 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 169 | Un_random | 38107367 | 38109897 | -1 | 2 | 50.4% | 70.8% | 387 | 0.47 / 0.64 = 0.73 | noComparaHits: GSTENG00020456001 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q7 | +/+ | ENSP00000239144 | HOXB8 | q7 | q7 | 236 | Un_random | 38129985 | 38130416 | -1 | 1 | 58% | 77.8% | 432 | 0.41 / 0.54 = 0.76 | ortholog_one2one: HOXB8 | 2 |
p10 | q8 | +/+ | ENSP00000309439 | HOXB9 | q8 | q8 | 312 | Un_random | 38140058 | 38146583 | -1 | 2 | 99.6% | 62.4% | 834 | 0.53 / 0.4 = 1.33 | noComparaHits: GSTENG00020456001 | 1 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | +/+ | ENSP00000290295 | HOXB13 | q9 | q9 | 296 | Un_random | 38176501 | 38178153 | -1 | 2 | 94.4% | 56.2% | 870 | 0.58 / 0.51 = 1.14 | ortholog_one2many: GSTENG00020457001
; HOXB13 |
1 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 11 (region 2 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 6 -i 52086248:52245575 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=8.71 log_scoreRatio_sum=-0.31 focal_scoreRatio_sum=2.43
AlnScore=4237 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 216 | 6 | 52086341 | 52087804 | -1 | 2 | 100% | 42.7% | 1002 | 0.67 / 0.66 = 1.02 | noComparaHits: Hoxa1 | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 324 | 6 | 52092484 | 52094227 | -1 | 2 | 99.4% | 49.6% | 1215 | 0.55 / 0.53 = 1.04 | between_species_paralog: Hoxa2 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 398.2 | 6 | 52099526 | 52102232 | -1 | 2 | 100% | 46.6% | 1521 | 0.5 / 0.52 = 0.96 | between_species_paralog: Hoxa3 | 3 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 227.6 | 6 | 52120000 | 52121271 | -1 | 2 | 96.8% | 48.3% | 783 | 0.43 / 0.54 = 0.8 | between_species_paralog: Hoxa4 | 4 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 322 | 6 | 52132167 | 52133933 | -1 | 2 | 100% | 59.6% | 816 | 0.4 / 0.41 = 0.98 | between_species_paralog: Hoxa5 | 2 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 248 | 6 | 52135951 | 52138207 | -1 | 2 | 100% | 56.2% | 699 | 0.47 / 0.48 = 0.98 | between_species_paralog: Hoxa6 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 244 | 6 | 52145402 | 52146988 | -1 | 2 | 94% | 59% | 618 | 0.42 / 0.44 = 0.95 | between_species_paralog: Hoxa7 | 2 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q8 | +/+ | ENSP00000309439 | HOXB9 | q8 | q8 | 231.8 | 6 | 52153833 | 52155687 | -1 | 2 | 94.8% | 49.4% | 759 | 0.53 / 0.55 = 0.96 | between_species_paralog: Hoxa9 | 4 |
--- | q9 | gapp | - | - | - | q9 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 257 | 6 | 52188490 | 52189924 | -1 | 2 | 76.8% | 57.9% | 699 | 0.58 / 0.57 = 1.02 | between_species_paralog: Hoxa13 | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 12 (region 2 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_56 -i 1324797:1481229 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=8.6 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=2.48
AlnScore=4150 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 187.5 | scaffold_56 | 1479966 | 1481208 | 1 | 2 | 100% | 41.5% | 960 | 0.67 / 0.7 = 0.96 | noComparaHits: hoxa1 | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 290 | scaffold_56 | 1470271 | 1471789 | 1 | 2 | 96.6% | 48.7% | 1074 | 0.55 / 0.58 = 0.95 | ortholog_one2many: HOXA2 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 333 | scaffold_56 | 1464665 | 1465438 | 1 | 1 | 60.1% | 65.5% | 774 | 0.5 / 0.6 = 0.83 | between_species_paralog: HOXA3 | 3 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q5 | +/+ | ENSP00000328928 | HOXB4 | q5 | q5 | 261.4 | scaffold_56 | 1443839 | 1444907 | 1 | 2 | 94% | 50.4% | 759 | 0.43 / 0.47 = 0.91 | between_species_paralog: HOXA4 | 3 |
p5 | q6 | +/+ | ENSP00000239151 | HOXB5 | q6 | q6 | 310 | scaffold_56 | 1433019 | 1434430 | 1 | 2 | 100% | 58.4% | 828 | 0.4 / 0.43 = 0.93 | between_species_paralog: hoxa5 | 2 |
p6 | q7 | +/+ | ENSP00000225648 | HOXB6 | q7 | q7 | 250 | scaffold_56 | 1430023 | 1431420 | 1 | 2 | 100% | 56.4% | 699 | 0.47 / 0.47 = 1 | noComparaHits: ENSXETG00000027535 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q8 | +/+ | ENSP00000239165 | HOXB7 | q8 | q8 | 223.7 | scaffold_56 | 1421765 | 1423383 | 1 | 2 | 95.9% | 54% | 615 | 0.42 / 0.49 = 0.86 | ortholog_one2many: HOXA7 | 1 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q8 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q9 | +/+ | ENSP00000309439 | HOXB9 | q9 | q9 | 248 | scaffold_56 | 1415310 | 1416632 | 1 | 2 | 81.6% | 56.7% | 630 | 0.53 / 0.52 = 1.02 | noComparaHits: ENSXETG00000000724 | 2 |
--- | q10 | gapp | - | - | - | q10 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q11 | +/+ | ENSP00000290295 | HOXB13 | q11 | q11 | 293 | scaffold_56 | 1384919 | 1386299 | 1 | 2 | 90.8% | 54.6% | 792 | 0.58 / 0.51 = 1.14 | between_species_paralog: HOXA13 | 1 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 13 (region 2 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 14 -i 43223880:43376476 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=8.41 log_scoreRatio_sum=-0.67 focal_scoreRatio_sum=2.38
AlnScore=4053 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 208.5 | 14 | 43223934 | 43225391 | -1 | 2 | 100% | 43.1% | 981 | 0.67 / 0.67 = 1 | noComparaHits: 482367 | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 307 | 14 | 43230194 | 43231949 | -1 | 2 | 99.4% | 48.3% | 1212 | 0.55 / 0.56 = 0.98 | between_species_paralog: 609592 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 403 | 14 | 43237520 | 43240239 | -1 | 2 | 100% | 48% | 1467 | 0.5 / 0.52 = 0.96 | ortholog_one2many: HOXA3 | 2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 170 | 14 | 43258601 | 43258876 | -1 | 1 | 36.7% | 82.6% | 276 | 0.43 / 0.66 = 0.65 | between_species_paralog: Q9XT68_CANFA | 4 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 314 | 14 | 43271375 | 43273168 | -1 | 2 | 100% | 58.5% | 816 | 0.4 / 0.42 = 0.95 | between_species_paralog: HOXA5 | 2 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 247 | 14 | 43275219 | 43277309 | -1 | 2 | 100% | 55.9% | 702 | 0.47 / 0.48 = 0.98 | between_species_paralog: 611383 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 245 | 14 | 43284774 | 43286350 | -1 | 2 | 92.6% | 62.1% | 585 | 0.42 / 0.44 = 0.95 | between_species_paralog: 482371 | 2 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q6,q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q8 | +/+ | ENSP00000309439 | HOXB9 | q8 | q8 | 229.4 | 14 | 43293510 | 43295428 | -1 | 2 | 93.2% | 49.6% | 750 | 0.53 / 0.55 = 0.96 | between_species_paralog: 482372 | 2 |
--- | q9 | gapp | - | - | - | q9 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 246 | 14 | 43328786 | 43330229 | -1 | 2 | 75.4% | 56% | 696 | 0.58 / 0.59 = 0.98 | between_species_paralog: 482375 | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 14 (region 1 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 19 -i 31195622:31423477 -f 17e4 some_geneID_to_be_selected
scoreRatio_sum=9.37 log_scoreRatio_sum=1.39 focal_scoreRatio_sum=3.53
AlnScore=4007 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 207 | 19 | 31195622 | 31195927 | -1 | 1 | 40.6% | 96.1% | 306 | 0.43 / 0.58 = 0.74 | noComparaHits: HOXB5 | 3 |
p5 | q2 | +/+ | ENSP00000239151 | HOXB5 | q2 | q2 | 375 | 19 | 31211892 | 31212452 | -1 | 1 | 69.5% | 99.5% | 561 | 0.4 / 0.31 = 1.29 | ortholog_one2one: HOXB5 | 1 |
p6 | q3 | +/+ | ENSP00000225648 | HOXB6 | q3 | q3 | 297 | 19 | 31215456 | 31215872 | -1 | 1 | 62.1% | 97.8% | 417 | 0.47 / 0.37 = 1.27 | noComparaHits: HOXB5 | 1 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000239165 | HOXB7 | q5 | q5 | 271 | 19 | 31227309 | 31227812 | -1 | 1 | 74.7% | 82.7% | 504 | 0.42 / 0.38 = 1.11 | ortholog_one2one: HXB7_BOVIN | 1 |
p9 | q6 | +/+ | ENSP00000239144 | HOXB8 | q6 | q6 | 214 | 19 | 31230130 | 31230462 | -1 | 1 | 47.7% | 93.1% | 333 | 0.41 / 0.58 = 0.71 | noComparaHits: | 3 |
p10 | q7 | +/+ | ENSP00000309439 | HOXB9 | q7 | q7 | 340 | 19 | 31239435 | 31242559 | -1 | 2 | 65.2% | 99.4% | 489 | 0.53 / 0.34 = 1.56 | ortholog_one2one: HOXB9 | 1 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000290295 | HOXB13 | q10 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q9 | /+ | ENSP00000302547 | TTLL6 | q9 | q9 | 808 | 19 | 31368492 | 31387598 | 1 | 7 | 98.1% | 68.3% | 1824 | 0.78 / 0.29 = 2.69 | ortholog_one2one: TTLL6 | 1 |
p14 | --- | gapq | ENSP00000365871 | Q658K6_HUMAN | q8 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q10 | gape | - | - | - | q10 | - | - | - | - | - | - | - | - | - | - | - | - |
region 15 (region 1 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 27 -i 3253442:3641490 -f 29e4 some_geneID_to_be_selected
scoreRatio_sum=11.93 log_scoreRatio_sum=2.52 focal_scoreRatio_sum=5.74
AlnScore=3940 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 165 | 27 | 3640987 | 3641313 | 1 | 1 | 36.5% | 80.2% | 327 | 0.67 / 0.74 = 0.91 | ortholog_one2one: HXB1_CHICK | 1 |
--- | q2 | gapp | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q3 | +/+ | ENSP00000331741 | HOXB2 | q3 | q3 | 210 | 27 | 3625326 | 3625943 | 1 | 1 | 67.7% | 53.3% | 618 | 0.55 / 0.7 = 0.79 | noComparaHits: HXB8_CHICK | 1 |
p3 | q4 | +/+ | ENSP00000308252 | HOXB3 | q4 | q4 | 590 | 27 | 3615199 | 3617444 | 1 | 2 | 93.5% | 71.7% | 1185 | 0.5 / 0.29 = 1.72 | ortholog_one2one: HXB3_CHICK | 1 |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 281 | 27 | 3584442 | 3586617 | 1 | 2 | 57.6% | 81.1% | 492 | 0.4 / 0.48 = 0.83 | ortholog_one2one: HXB5_CHICK | 1 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q6 | +/+ | ENSP00000239144 | HOXB8 | q6 | q6 | 452 | 27 | 3578995 | 3580487 | 1 | 2 | 94.2% | 90% | 717 | 0.41 / 0.12 = 3.42 | ortholog_one2one: HXB8_CHICK | 1 |
p10 | q7 | +/+ | ENSP00000309439 | HOXB9 | q7 | q7 | 429 | 27 | 3563906 | 3568219 | 1 | 2 | 100% | 81.2% | 741 | 0.53 / 0.17 = 3.12 | ortholog_one2one: HOXB9 | 1 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000290295 | HOXB13 | q8 | q8 | 297 | 27 | 3518760 | 3521213 | 1 | 2 | 94.4% | 53.2% | 909 | 0.58 / 0.51 = 1.14 | ortholog_one2one: HOXB13 | 1 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 16 (region 2 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 8 -i 293235105:293354412 -f 89e3 some_geneID_to_be_selected
scoreRatio_sum=8.25 log_scoreRatio_sum=-0.9 focal_scoreRatio_sum=2.14
AlnScore=3853 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 205 | 8 | 293352743 | 293354355 | 1 | 2 | 100% | 41.8% | 1023 | 0.67 / 0.67 = 1 | noComparaHits: HOXA1 | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 295 | 8 | 293345541 | 293347290 | 1 | 2 | 98% | 50.5% | 1101 | 0.55 / 0.57 = 0.96 | between_species_paralog: HOXA2 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 432 | 8 | 293336615 | 293339276 | 1 | 2 | 94% | 51.7% | 1356 | 0.5 / 0.48 = 1.04 | between_species_paralog: HOXA3 | 2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 154.4 | 8 | 293316292 | 293317748 | 1 | 2 | 98% | 36.4% | 909 | 0.43 / 0.69 = 0.62 | between_species_paralog: HOXA4 | 3 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 318 | 8 | 293302329 | 293304252 | 1 | 2 | 100% | 58.8% | 813 | 0.4 / 0.41 = 0.98 | between_species_paralog: HOXA5 | 2 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 254 | 8 | 293298050 | 293300138 | 1 | 2 | 100% | 57.3% | 696 | 0.47 / 0.46 = 1.02 | between_species_paralog: HOXA6 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 246 | 8 | 293287927 | 293289785 | 1 | 2 | 92.2% | 61.1% | 582 | 0.42 / 0.44 = 0.95 | noComparaHits: HOXA9 | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q9 | +/+ | ENSP00000309439 | HOXB9 | q9 | q9 | 122 | 8 | 293268693 | 293268905 | 1 | 1 | 28.4% | 77.5% | 213 | 0.53 / 0.76 = 0.7 | noComparaHits: HOXA10 | 3 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 246 | 8 | 293235105 | 293236750 | 1 | 2 | 76.8% | 54% | 732 | 0.58 / 0.59 = 0.98 | between_species_paralog: Q9TUC8_MONDO | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 17 (region 1 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 8 -i 24280265:24441965 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=8.01 log_scoreRatio_sum=-1.11 focal_scoreRatio_sum=2.26
AlnScore=3779 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 129 | 8 | 24441627 | 24441965 | 1 | 1 | 35.5% | 64% | 339 | 0.67 / 0.79 = 0.85 | noComparaHits: Q2WFU0_ORYLA | 3 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 306 | 8 | 24421469 | 24423633 | 1 | 2 | 97.2% | 47.2% | 1221 | 0.55 / 0.56 = 0.98 | ortholog_one2one: Q3V621_ORYLA | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 334 | 8 | 24414379 | 24415236 | 1 | 1 | 60.8% | 63.5% | 858 | 0.5 / 0.6 = 0.83 | ortholog_one2one: Q3V620_ORYLA | 3 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 287 | 8 | 24381089 | 24383014 | 1 | 2 | 97.6% | 58.2% | 750 | 0.43 / 0.42 = 1.02 | ortholog_one2one: Q3V619_ORYLA | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 259 | 8 | 24366650 | 24368530 | 1 | 2 | 93.7% | 52.3% | 891 | 0.4 / 0.52 = 0.77 | ortholog_one2one: Q9PVS0_ORYLA | 3 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 247 | 8 | 24361076 | 24363055 | 1 | 2 | 100% | 51.6% | 843 | 0.47 / 0.48 = 0.98 | ortholog_one2many: Q3V617_ORYLA | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q7 | +/+ | ENSP00000239144 | HOXB8 | q7 | q7 | 237 | 8 | 24328909 | 24329400 | 1 | 1 | 62.6% | 70.7% | 492 | 0.41 / 0.53 = 0.77 | noComparaHits: Q3V617_ORYLA | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q9 | +/+ | ENSP00000309439 | HOXB9 | q9 | q9 | 153 | 8 | 24308256 | 24308879 | 1 | 1 | 70.4% | 48.1% | 624 | 0.53 / 0.7 = 0.76 | ortholog_one2one: Q3V615_ORYLA | 4 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 272 | 8 | 24280265 | 24281758 | 1 | 2 | 91.5% | 54.9% | 855 | 0.58 / 0.55 = 1.05 | ortholog_one2one: Q3V614_ORYLA | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 18 (region 1 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXI -i 1484074:1740602 -f 19e4 some_geneID_to_be_selected
scoreRatio_sum=8.13 log_scoreRatio_sum=-1.1 focal_scoreRatio_sum=2.14
AlnScore=3714 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 134 | groupXI | 1740267 | 1740602 | 1 | 1 | 36.2% | 67.3% | 336 | 0.67 / 0.79 = 0.85 | noComparaHits: ENSGACG00000005635 | 3 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 323 | groupXI | 1720324 | 1722896 | 1 | 2 | 97.5% | 47.8% | 1275 | 0.55 / 0.53 = 1.04 | ortholog_one2one: ENSGACG00000005633 | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 474.1 | groupXI | 1709563 | 1713575 | 1 | 3 | 97% | 58.7% | 1350 | 0.5 / 0.43 = 1.16 | ortholog_one2one: ENSGACG00000005631 | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 294 | groupXI | 1677309 | 1679547 | 1 | 2 | 92% | 62.3% | 732 | 0.43 / 0.41 = 1.05 | ortholog_one2one: ENSGACG00000005628 | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 280 | groupXI | 1659578 | 1661482 | 1 | 2 | 82.2% | 63% | 765 | 0.4 / 0.48 = 0.83 | ortholog_one2one: ENSGACG00000005626 | 1 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 144 | groupXI | 1655547 | 1655828 | 1 | 1 | 38.4% | 74.5% | 282 | 0.47 / 0.69 = 0.68 | noComparaHits: ENSGACG00000005623 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 134 | groupXI | 1639386 | 1639658 | 1 | 1 | 38.7% | 70.3% | 273 | 0.42 / 0.69 = 0.61 | noComparaHits: | 1 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q9 | +/+ | ENSP00000309439 | HOXB9 | q9 | q9 | 169 | groupXI | 1617567 | 1618178 | 1 | 1 | 69.2% | 51.5% | 612 | 0.53 / 0.67 = 0.79 | noComparaHits: | 4 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 288 | groupXI | 1524249 | 1526027 | 1 | 2 | 94% | 56.4% | 867 | 0.58 / 0.52 = 1.12 | ortholog_one2many: ENSGACG00000005617 | 1 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 19 (region 2 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 98981188:99131580 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=7.72 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=2.25
AlnScore=3648 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 211.8 | 3 | 99130112 | 99131559 | 1 | 2 | 100% | 42.9% | 987 | 0.67 / 0.66 = 1.02 | noComparaHits: HOXA1 | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 301 | 3 | 99123521 | 99125274 | 1 | 2 | 99.4% | 47.1% | 1194 | 0.55 / 0.57 = 0.96 | ortholog_one2many: HOXA2 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 418 | 3 | 99115329 | 99118052 | 1 | 2 | 100% | 49% | 1443 | 0.5 / 0.5 = 1 | ortholog_one2many: HOXA3 | 2 |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q4 | +/+ | ENSP00000239151 | HOXB5 | q4 | q4 | 324 | 3 | 99082328 | 99084105 | 1 | 2 | 100% | 60.3% | 816 | 0.4 / 0.4 = 1 | between_species_paralog: HOXA5 | 2 |
p6 | q5 | +/+ | ENSP00000225648 | HOXB6 | q5 | q5 | 249 | 3 | 99078244 | 99080293 | 1 | 2 | 100% | 56.4% | 702 | 0.47 / 0.47 = 1 | between_species_paralog: HOXA6 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q6 | +/+ | ENSP00000239165 | HOXB7 | q6 | q6 | 246 | 3 | 99068833 | 99070350 | 1 | 2 | 92.6% | 62.3% | 588 | 0.42 / 0.44 = 0.95 | between_species_paralog: HOXA7 | 2 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q7 | +/+ | ENSP00000309439 | HOXB9 | q7 | q7 | 229.8 | 3 | 99059984 | 99061844 | 1 | 2 | 93.2% | 49.6% | 750 | 0.53 / 0.55 = 0.96 | between_species_paralog: HOXA9 | 3 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | +/+ | ENSP00000290295 | HOXB13 | q9 | q9 | 181.2 | 3 | 99025867 | 99026974 | 1 | 2 | 42.3% | 68.6% | 363 | 0.58 / 0.7 = 0.83 | between_species_paralog: HOXA13 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 20 (region 2 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 2 -i 32513553:32621837 -f 81e3 some_geneID_to_be_selected
scoreRatio_sum=7.49 log_scoreRatio_sum=-1.81 focal_scoreRatio_sum=2.24
AlnScore=3331 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 130 | 2 | 32513676 | 32513981 | -1 | 1 | 33.6% | 68.6% | 306 | 0.67 / 0.79 = 0.85 | noComparaHits: Q804C5_CHICK | 3 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 112 | 2 | 32518767 | 32519213 | -1 | 1 | 40.4% | 46.7% | 447 | 0.55 / 0.84 = 0.65 | ortholog_one2many: Q804C5_CHICK | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 460 | 2 | 32524757 | 32527370 | -1 | 2 | 94% | 56.8% | 1230 | 0.5 / 0.45 = 1.11 | between_species_paralog: HXD3_CHICK | 2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 213.4 | 2 | 32544873 | 32546192 | -1 | 2 | 46.6% | 82.1% | 351 | 0.43 / 0.57 = 0.75 | between_species_paralog: HXA4_CHICK | 1 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 161 | 2 | 32558335 | 32558634 | -1 | 1 | 37.2% | 78% | 300 | 0.4 / 0.7 = 0.57 | noComparaHits: HOXA6 | 2 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 226 | 2 | 32562094 | 32563595 | -1 | 2 | 91.5% | 56.1% | 636 | 0.47 / 0.52 = 0.9 | ortholog_one2many: HOXA6 | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 215 | 2 | 32570326 | 32571985 | -1 | 2 | 83.4% | 56% | 564 | 0.42 / 0.51 = 0.82 | between_species_paralog: HXA7_CHICK | 2 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q8 | +/+ | ENSP00000309439 | HOXB9 | q8 | q8 | 248 | 2 | 32579722 | 32581455 | -1 | 2 | 89.2% | 54.6% | 681 | 0.53 / 0.52 = 1.02 | between_species_paralog: HXA9_CHICK | 2 |
--- | q9 | gapp | - | - | - | q9 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000290295 | HOXB13 | q10 | q10 | 173 | 2 | 32621256 | 32621837 | -1 | 1 | 65.1% | 47.9% | 582 | 0.58 / 0.71 = 0.82 | noComparaHits: HXA13_CHICK | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 21 (region 2 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupX -i 9855283:9935922 -f 60e3 some_geneID_to_be_selected
scoreRatio_sum=7.09 log_scoreRatio_sum=-1.05 focal_scoreRatio_sum=2.03
AlnScore=3318 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 188.9 | groupX | 9855307 | 9856566 | -1 | 2 | 95.7% | 42.1% | 918 | 0.67 / 0.7 = 0.96 | noComparaHits: ENSGACG00000007085 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 299 | groupX | 9860329 | 9861991 | -1 | 2 | 93% | 51.7% | 1017 | 0.55 / 0.57 = 0.96 | between_species_paralog: ENSGACG00000007090 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 401.9 | groupX | 9866274 | 9869714 | -1 | 2 | 93.7% | 53.7% | 1236 | 0.5 / 0.52 = 0.96 | between_species_paralog: ENSGACG00000007094 | 2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 238.5 | groupX | 9880509 | 9881722 | -1 | 2 | 94.4% | 52.7% | 678 | 0.43 / 0.52 = 0.83 | between_species_paralog: ENSGACG00000007100 | 3 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 277 | groupX | 9889854 | 9891245 | -1 | 2 | 98.1% | 53.8% | 813 | 0.4 / 0.49 = 0.82 | between_species_paralog: ENSGACG00000007108 | 2 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q5,q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q6 | +/+ | ENSP00000239165 | HOXB7 | q6 | q6 | 133 | groupX | 9896112 | 9896375 | -1 | 1 | 37.8% | 75% | 264 | 0.42 / 0.69 = 0.61 | ortholog_one2many: ENSGACG00000007112 | 2 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q7 | +/+ | ENSP00000309439 | HOXB9 | q7 | q7 | 211 | groupX | 9901374 | 9902621 | -1 | 2 | 66% | 64.1% | 501 | 0.53 / 0.59 = 0.9 | between_species_paralog: ENSGACG00000007123 | 3 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000290295 | HOXB13 | q8 | q8 | 268 | groupX | 9924933 | 9926271 | -1 | 2 | 94.4% | 52.9% | 807 | 0.58 / 0.55 = 1.05 | between_species_paralog: Q9PWC4_GASAC | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 22 (region 2 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 4 -i 37098097:37159236 -f 46e3 some_geneID_to_be_selected
scoreRatio_sum=6.5 log_scoreRatio_sum=-0.58 focal_scoreRatio_sum=1.09
AlnScore=3230 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 206.8 | 4 | 37157707 | 37159185 | 1 | 2 | 100% | 42.2% | 990 | 0.67 / 0.67 = 1 | noComparaHits: HOXA1 | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 306 | 4 | 37151131 | 37152869 | 1 | 2 | 97.2% | 49.9% | 1104 | 0.55 / 0.56 = 0.98 | between_species_paralog: HOXA2 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 438.9 | 4 | 37142956 | 37145704 | 1 | 3 | 99.8% | 53.8% | 1359 | 0.5 / 0.47 = 1.06 | between_species_paralog: HOXA3 | 2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 171 | 4 | 37124791 | 37125069 | 1 | 1 | 37.1% | 81.7% | 279 | 0.43 / 0.65 = 0.66 | between_species_paralog: HOXA4 | 4 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 301 | 4 | 37111024 | 37112777 | 1 | 2 | 97.8% | 58.2% | 789 | 0.4 / 0.45 = 0.89 | between_species_paralog: HOXA5 | 2 |
p6 | q6 | +/+ | ENSP00000225648 | HOXB6 | q6 | q6 | 246 | 4 | 37106916 | 37108988 | 1 | 2 | 100% | 55.9% | 702 | 0.47 / 0.48 = 0.98 | ortholog_one2many: HOXA6 | 2 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000239165 | HOXB7 | q7 | q7 | 241 | 4 | 37098097 | 37099658 | 1 | 2 | 94.5% | 59.7% | 600 | 0.42 / 0.45 = 0.93 | between_species_paralog: HOXA7 | 2 |
p9 | --- | gape | ENSP00000239144 | HOXB8 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 23 (region 3 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_226 -i 281000:558409 -f 21e4 some_geneID_to_be_selected
scoreRatio_sum=6.08 log_scoreRatio_sum=-1.07 focal_scoreRatio_sum=2.31
AlnScore=3032 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 274.6 | scaffold_226 | 555793 | 558409 | 1 | 2 | 92.8% | 44.9% | 1152 | 0.5 / 0.67 = 0.75 | noComparaHits: ENSXETG00000025181 | 4 |
p4 | q2 | +/+ | ENSP00000328928 | HOXB4 | q2 | q2 | 272 | scaffold_226 | 463073 | 464225 | 1 | 2 | 94.4% | 54.6% | 708 | 0.43 / 0.45 = 0.96 | between_species_paralog: HOXC4 | 1 |
p5 | q3 | +/+ | ENSP00000239151 | HOXB5 | q3 | q3 | 188.9 | scaffold_226 | 422390 | 423762 | 1 | 2 | 93.7% | 43.3% | 654 | 0.4 / 0.65 = 0.62 | noComparaHits: HOXC5 | 3 |
p6 | q4 | +/+ | ENSP00000225648 | HOXB6 | q4 | q4 | 194.9 | scaffold_226 | 418988 | 420480 | 1 | 2 | 96.9% | 50% | 663 | 0.47 / 0.59 = 0.8 | ortholog_one2many: HOXC6 | 3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q5 | +/+ | ENSP00000239144 | HOXB8 | q5 | q5 | 300 | scaffold_226 | 396316 | 398530 | 1 | 2 | 87.2% | 68.1% | 648 | 0.41 / 0.41 = 1 | between_species_paralog: hoxc8 | 2 |
p10 | q6 | +/+ | ENSP00000309439 | HOXB9 | q6 | q6 | 241.1 | scaffold_226 | 388156 | 390480 | 1 | 2 | 75.2% | 62.8% | 561 | 0.53 / 0.53 = 1 | noComparaHits: hoxc9 | 3 |
--- | q7 | gapp | - | - | - | q7 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000290295 | HOXB13 | q8 | q8 | 233 | scaffold_226 | 281000 | 284142 | 1 | 2 | 94% | 44.8% | 810 | 0.58 / 0.61 = 0.95 | between_species_paralog: ENSXETG00000025184 | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 24 (region 2 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 11 -i 10492560:10571803 -f 59e3 some_geneID_to_be_selected
scoreRatio_sum=6.46 log_scoreRatio_sum=-0.58 focal_scoreRatio_sum=1.81
AlnScore=3010 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 179.5 | 11 | 10492587 | 10493923 | -1 | 2 | 98% | 40.7% | 957 | 0.67 / 0.71 = 0.94 | noComparaHits: Q3V637_ORYLA | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 300 | 11 | 10497917 | 10499533 | -1 | 2 | 92.4% | 52.1% | 999 | 0.55 / 0.57 = 0.96 | between_species_paralog: Q3V636_ORYLA | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 419.2 | 11 | 10503391 | 10506703 | -1 | 2 | 96.5% | 54.2% | 1305 | 0.5 / 0.5 = 1 | between_species_paralog: Q3V635_ORYLA | 1 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 229.5 | 11 | 10516211 | 10517399 | -1 | 2 | 96% | 47.5% | 762 | 0.43 / 0.54 = 0.8 | noComparaHits: Q9PTV6_ORYLA | 4 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 281 | 11 | 10525353 | 10526735 | -1 | 2 | 100% | 54.4% | 837 | 0.4 / 0.48 = 0.83 | noComparaHits: Q9PTV6_ORYLA | 2 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000309439 | HOXB9 | q6 | q6 | 206.9 | 11 | 10539594 | 10540702 | -1 | 2 | 98.4% | 47.9% | 789 | 0.53 / 0.6 = 0.88 | noComparaHits: Q9PTV6_ORYLA | 3 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000290295 | HOXB13 | q7 | q7 | 274 | 11 | 10561902 | 10563142 | -1 | 2 | 94.4% | 51.4% | 843 | 0.58 / 0.55 = 1.05 | between_species_paralog: Q3V628_ORYLA | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 25 (region 2 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_12 -i 2318841:2382264 -f 48e3 some_geneID_to_be_selected
scoreRatio_sum=6.31 log_scoreRatio_sum=-0.77 focal_scoreRatio_sum=1.79
AlnScore=2910 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 184.8 | scaffold_12 | 2318841 | 2320139 | -1 | 2 | 96% | 39.7% | 921 | 0.67 / 0.71 = 0.94 | noComparaHits: NEWSINFRUG00000149627 | 2 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 299 | scaffold_12 | 2323545 | 2325142 | -1 | 2 | 94.7% | 50.7% | 1053 | 0.55 / 0.57 = 0.96 | between_species_paralog: NEWSINFRUG00000157594 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 398.6 | scaffold_12 | 2329054 | 2331951 | -1 | 2 | 92.8% | 54.5% | 1224 | 0.5 / 0.52 = 0.96 | between_species_paralog: NEWSINFRUG00000149628 | 2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 220.2 | scaffold_12 | 2341359 | 2342542 | -1 | 2 | 94% | 50.6% | 669 | 0.43 / 0.56 = 0.77 | between_species_paralog: NEWSINFRUG00000149629 | 4 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 243.3 | scaffold_12 | 2350042 | 2351369 | -1 | 2 | 68.4% | 61.9% | 576 | 0.4 / 0.55 = 0.73 | noComparaHits: | 4 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000309439 | HOXB9 | q6 | q6 | 203.9 | scaffold_12 | 2360033 | 2361166 | -1 | 2 | 69.6% | 59.4% | 540 | 0.53 / 0.6 = 0.88 | between_species_paralog: HXA9_FUGRU | 3 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000290295 | HOXB13 | q7 | q7 | 279 | scaffold_12 | 2381071 | 2382264 | -1 | 2 | 94.4% | 54.1% | 819 | 0.58 / 0.54 = 1.07 | between_species_paralog: NEWSINFRUG00000149643 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 26 (region 2 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 21 -i 2978891:3053436 -f 56e3 some_geneID_to_be_selected
scoreRatio_sum=6.34 log_scoreRatio_sum=-0.75 focal_scoreRatio_sum=1.8
AlnScore=2879 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 120 | 21 | 3053092 | 3053406 | 1 | 1 | 33.2% | 61.3% | 315 | 0.67 / 0.81 = 0.83 | noComparaHits: GSTENG00017483001
; HOXA1 |
3 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 294 | 21 | 3047147 | 3048749 | 1 | 2 | 99.4% | 47.7% | 1122 | 0.55 / 0.58 = 0.95 | between_species_paralog: HOXA2 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 419 | 21 | 3040373 | 3043259 | 1 | 2 | 93.7% | 55.8% | 1236 | 0.5 / 0.5 = 1 | between_species_paralog: HOXA3
; GSTENG00017482001 |
2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 218.2 | 21 | 3029847 | 3031009 | 1 | 2 | 91.2% | 49% | 648 | 0.43 / 0.56 = 0.77 | between_species_paralog: HOXA4 | 4 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 264 | 21 | 3021241 | 3022598 | 1 | 2 | 98.1% | 51.8% | 807 | 0.4 / 0.51 = 0.78 | between_species_paralog: GSTENG00017481001
; HOXA5 |
3 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000309439 | HOXB9 | q6 | q6 | 201.9 | 21 | 3012226 | 3013360 | 1 | 2 | 69.6% | 58.9% | 540 | 0.53 / 0.61 = 0.87 | between_species_paralog: HOXA9
; GSTENG00017478001 |
4 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000290295 | HOXB13 | q7 | q7 | 294 | 21 | 2986964 | 2988118 | 1 | 2 | 94.4% | 55.7% | 822 | 0.58 / 0.51 = 1.14 | between_species_paralog: HOXA13
; GSTENG00017476001 |
2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 27 (region 2 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 35634565:35764982 -f 98e3 some_geneID_to_be_selected
scoreRatio_sum=6.48 log_scoreRatio_sum=-1.87 focal_scoreRatio_sum=2.43
AlnScore=2758 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 108 | 23 | 35764716 | 35764982 | 1 | 1 | 30.6% | 62.1% | 267 | 0.67 / 0.83 = 0.81 | noComparaHits: hoxc1a | 5 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 110 | 23 | 35729227 | 35729544 | 1 | 1 | 28.3% | 52.5% | 318 | 0.5 / 0.86 = 0.58 | noComparaHits: hoxc3a | 4 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 256 | 23 | 35712551 | 35713763 | 1 | 2 | 95.2% | 54.1% | 693 | 0.43 / 0.48 = 0.9 | between_species_paralog: hoxc4a | 2 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q4 | +/+ | ENSP00000225648 | HOXB6 | q5 | q4 | 115 | 23 | 35701539 | 35701724 | 1 | 1 | 27.7% | 85.5% | 186 | 0.47 / 0.75 = 0.63 | noComparaHits: hoxc5a | 8 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000239165 | HOXB7 | q5 | q5 | 127 | 23 | 35697984 | 35698241 | 1 | 1 | 38.7% | 70.9% | 258 | 0.42 / 0.71 = 0.59 | noComparaHits: hoxc6a | 3 |
p9 | q6 | +/+ | ENSP00000239144 | HOXB8 | q6 | q6 | 300 | 23 | 35682935 | 35684919 | 1 | 2 | 99.2% | 61.2% | 717 | 0.41 / 0.41 = 1 | between_species_paralog: hoxc8a | 3 |
p10 | q7 | +/+ | ENSP00000309439 | HOXB9 | q7 | q7 | 240.1 | 23 | 35676857 | 35678677 | 1 | 2 | 98.8% | 49.5% | 783 | 0.53 / 0.53 = 1 | between_species_paralog: hoxc9a | 3 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | +/+ | ENSP00000290295 | HOXB13 | q9 | q9 | 240 | 23 | 35634565 | 35637149 | 1 | 2 | 92.6% | 47.8% | 795 | 0.58 / 0.6 = 0.97 | between_species_paralog: hoxc13a | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 28 (region 3 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2344 -i 19835:66189 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=5.86 log_scoreRatio_sum=-1.32 focal_scoreRatio_sum=1.5
AlnScore=2732 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 188.9 | contig_2344 | 19859 | 21118 | -1 | 2 | 95.7% | 42.1% | 918 | 0.67 / 0.7 = 0.96 | noComparaHits: ENSGACG00000007085 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 299 | contig_2344 | 24881 | 26543 | -1 | 2 | 93% | 51.7% | 1017 | 0.55 / 0.57 = 0.96 | noComparaHits: ENSGACG00000007090 | 2 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 401.9 | contig_2344 | 30826 | 34266 | -1 | 2 | 93.7% | 53.7% | 1236 | 0.5 / 0.52 = 0.96 | noComparaHits: ENSGACG00000007094 | 2 |
p4 | q4 | +/+ | ENSP00000328928 | HOXB4 | q4 | q4 | 238.5 | contig_2344 | 45061 | 46274 | -1 | 2 | 94.4% | 52.7% | 678 | 0.43 / 0.52 = 0.83 | noComparaHits: ENSGACG00000007100 | 3 |
p5 | q5 | +/+ | ENSP00000239151 | HOXB5 | q5 | q5 | 277 | contig_2344 | 54406 | 55797 | -1 | 2 | 98.1% | 53.8% | 813 | 0.4 / 0.49 = 0.82 | noComparaHits: ENSGACG00000007108 | 2 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q5,q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q6 | +/+ | ENSP00000239165 | HOXB7 | q6 | q6 | 133 | contig_2344 | 60664 | 60927 | -1 | 1 | 37.8% | 75% | 264 | 0.42 / 0.69 = 0.61 | noComparaHits: ENSGACG00000007112 | 2 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q7 | +/+ | ENSP00000309439 | HOXB9 | q7 | q7 | 134 | contig_2344 | 65926 | 66144 | -1 | 1 | 29.2% | 84.9% | 219 | 0.53 / 0.74 = 0.72 | noComparaHits: | 6 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 29 (region 4 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXII -i 11575519:11674071 -f 74e3 some_geneID_to_be_selected
scoreRatio_sum=5.9 log_scoreRatio_sum=-1.33 focal_scoreRatio_sum=2.22
AlnScore=2684 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 102 | groupXII | 11673811 | 11674071 | 1 | 1 | 30.2% | 56.3% | 261 | 0.67 / 0.84 = 0.8 | noComparaHits: ENSGACG00000009431 | 4 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000328928 | HOXB4 | q2 | q2 | 261 | groupXII | 11647407 | 11648602 | 1 | 2 | 94% | 56.5% | 687 | 0.43 / 0.47 = 0.91 | between_species_paralog: ENSGACG00000009421 | 2 |
p5 | q3 | +/+ | ENSP00000239151 | HOXB5 | q3 | q3 | 124 | groupXII | 11638322 | 11638513 | 1 | 1 | 23.8% | 85.9% | 192 | 0.4 / 0.77 = 0.52 | noComparaHits: ENSGACG00000009416 | 6 |
p6 | q4 | +/+ | ENSP00000225648 | HOXB6 | q4 | q4 | 179.4 | groupXII | 11633747 | 11634865 | 1 | 2 | 96% | 49.1% | 639 | 0.47 / 0.62 = 0.76 | ortholog_one2many: Q4VQD3_GASAC | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q5 | +/+ | ENSP00000239144 | HOXB8 | q5 | q5 | 298 | groupXII | 11622080 | 11624013 | 1 | 2 | 86.8% | 65.5% | 672 | 0.41 / 0.42 = 0.98 | ortholog_one2many: ENSGACG00000009401 | 1 |
p10 | q6 | +/+ | ENSP00000309439 | HOXB9 | q6 | q6 | 233.7 | groupXII | 11616265 | 11618032 | 1 | 2 | 98.8% | 51% | 705 | 0.53 / 0.55 = 0.96 | between_species_paralog: ENSGACG00000009396 | 1 |
--- | q7 | gapp | - | - | - | q7 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000290295 | HOXB13 | q8 | q8 | 241 | groupXII | 11575519 | 11578153 | 1 | 2 | 92.3% | 46.9% | 792 | 0.58 / 0.6 = 0.97 | between_species_paralog: ENSGACG00000009389 | 5 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 30 (region 3 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 12 -i 52619108:52735220 -f 87e3 some_geneID_to_be_selected
scoreRatio_sum=5.14 log_scoreRatio_sum=-1.02 focal_scoreRatio_sum=2.13
AlnScore=2542 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 284 | 12 | 52733974 | 52735154 | 1 | 2 | 94.4% | 59.9% | 693 | 0.43 / 0.43 = 1 | within_species_paralog: HOXC4 | 2 |
p5 | q2 | +/+ | ENSP00000239151 | HOXB5 | q2 | q2 | 184.9 | 12 | 52713174 | 52714528 | 1 | 2 | 93.7% | 42.6% | 648 | 0.4 / 0.66 = 0.61 | noComparaHits: HOXC5
; hsa-mir-615 |
3 |
p6 | q3 | +/+ | ENSP00000225648 | HOXB6 | q3 | q3 | 192.6 | 12 | 52708573 | 52709992 | 1 | 2 | 97.8% | 49.4% | 672 | 0.47 / 0.59 = 0.8 | within_species_paralog: HOXC6 | 3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 299 | 12 | 52689336 | 52691360 | 1 | 2 | 88.9% | 61.3% | 687 | 0.41 / 0.41 = 1 | within_species_paralog: HOXC8 | 2 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 238.6 | 12 | 52680240 | 52682704 | 1 | 2 | 80.8% | 55.3% | 669 | 0.53 / 0.54 = 0.98 | within_species_paralog: HOXC9 | 3 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q7 | gapp | - | - | - | q7 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000290295 | HOXB13 | q8 | q8 | 136 | 12 | 52619108 | 52619716 | 1 | 1 | 72.5% | 39% | 609 | 0.58 / 0.77 = 0.75 | within_species_paralog: HOXC13 | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 31 (region 3 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 7 -i 12836721:12915695 -f 59e3 some_geneID_to_be_selected
scoreRatio_sum=5.13 log_scoreRatio_sum=-1.08 focal_scoreRatio_sum=2.19
AlnScore=2538 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 249.8 | 7 | 12904751 | 12906013 | 1 | 2 | 100% | 52.1% | 747 | 0.43 / 0.5 = 0.86 | between_species_paralog: HXC4_ORYLA | 2 |
p5 | q2 | +/+ | ENSP00000239151 | HOXB5 | q2 | q2 | 126 | 7 | 12895793 | 12895984 | 1 | 1 | 23.8% | 89.1% | 192 | 0.4 / 0.77 = 0.52 | noComparaHits: Q3V607_ORYLA
; Q3V609_ORYLA |
4 |
p6 | q3 | +/+ | ENSP00000225648 | HOXB6 | q3 | q3 | 182.1 | 7 | 12891828 | 12892885 | 1 | 2 | 96.4% | 49.3% | 642 | 0.47 / 0.61 = 0.77 | noComparaHits: HXC9_ORYLA
; Q3V609_ORYLA |
3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 299 | 7 | 12880841 | 12882567 | 1 | 2 | 87.2% | 67.1% | 648 | 0.41 / 0.41 = 1 | noComparaHits: HXC9_ORYLA
; Q3V609_ORYLA |
1 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 240.8 | 7 | 12875582 | 12877173 | 1 | 2 | 99.2% | 51.2% | 708 | 0.53 / 0.53 = 1 | between_species_paralog: HXC9_ORYLA | 1 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000290295 | HOXB13 | q7 | q7 | 245 | 7 | 12836721 | 12839091 | 1 | 2 | 91.2% | 48.1% | 783 | 0.58 / 0.59 = 0.98 | between_species_paralog: Q3V600_ORYLA | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 32 (region 3 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 19 -i 30587771:30608457 -f 16e3 some_geneID_to_be_selected
scoreRatio_sum=11.72 log_scoreRatio_sum=4.02 focal_scoreRatio_sum=1.29
AlnScore=2532 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 550 | 19 | 30587810 | 30589166 | -1 | 2 | 100% | 87% | 921 | 0.67 / 0.13 = 5.15 | ortholog_one2one: HOXB1 | 1 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 580 | 19 | 30598846 | 30600675 | -1 | 2 | 100% | 83.3% | 1068 | 0.55 / 0.17 = 3.24 | ortholog_one2one: HOXB2 | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 712 | 19 | 30606318 | 30608457 | -1 | 2 | 80% | 96.2% | 1035 | 0.5 / 0.15 = 3.33 | ortholog_one2one: HOXB3 | 1 |
p4 | --- | gape | ENSP00000328928 | HOXB4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 33 (region 4 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 2 -i 16934870:17074091 -f 10e4 some_geneID_to_be_selected
scoreRatio_sum=5.52 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=2.09
AlnScore=2530 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 117 | 2 | 16935029 | 16935268 | -1 | 1 | 26.6% | 72.8% | 240 | 0.67 / 0.81 = 0.83 | noComparaHits: HOXD1 | 3 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 414 | 2 | 16951347 | 16954640 | -1 | 2 | 94% | 53.5% | 1248 | 0.5 / 0.5 = 1 | between_species_paralog: HOXD3 | 3 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 253.8 | 2 | 16969554 | 16970762 | -1 | 2 | 90.4% | 56.6% | 669 | 0.43 / 0.49 = 0.88 | between_species_paralog: HOXD4 | 2 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q3,q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 274 | 2 | 16991153 | 16992329 | -1 | 2 | 92.2% | 51.5% | 885 | 0.41 / 0.46 = 0.89 | between_species_paralog: HOXD8 | 1 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 239.7 | 2 | 16998559 | 16999927 | -1 | 2 | 70.8% | 62.2% | 564 | 0.53 / 0.53 = 1 | between_species_paralog: HOXD9 | 2 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 225 | 2 | 17072582 | 17074091 | -1 | 2 | 77.1% | 48.3% | 699 | 0.58 / 0.63 = 0.92 | between_species_paralog: HOXD13 | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 34 (region 3 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_66 -i 126650:194512 -f 51e3 some_geneID_to_be_selected
scoreRatio_sum=5.12 log_scoreRatio_sum=-1.08 focal_scoreRatio_sum=2.15
AlnScore=2529 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 257 | scaffold_66 | 126665 | 127863 | -1 | 2 | 94% | 55.3% | 687 | 0.43 / 0.48 = 0.9 | between_species_paralog: NEWSINFRUG00000146324 | 2 |
p5 | q2 | +/+ | ENSP00000239151 | HOXB5 | q2 | q2 | 124 | scaffold_66 | 135780 | 135971 | -1 | 1 | 23.8% | 87.5% | 192 | 0.4 / 0.77 = 0.52 | noComparaHits: NEWSINFRUG00000146325 | 7 |
p6 | q3 | +/+ | ENSP00000225648 | HOXB6 | q3 | q3 | 182 | scaffold_66 | 139130 | 140214 | -1 | 2 | 96.9% | 49.3% | 642 | 0.47 / 0.61 = 0.77 | between_species_paralog: O42504_FUGRU | 3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 303 | scaffold_66 | 149211 | 151058 | -1 | 2 | 89.7% | 65.2% | 693 | 0.41 / 0.41 = 1 | between_species_paralog: O42503_FUGRU | 1 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 230.7 | scaffold_66 | 154997 | 156667 | -1 | 2 | 74.8% | 61.6% | 567 | 0.53 / 0.55 = 0.96 | between_species_paralog: HXC9_FUGRU | 1 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000290295 | HOXB13 | q7 | q7 | 240 | scaffold_66 | 191852 | 194512 | -1 | 2 | 92.3% | 47.6% | 792 | 0.58 / 0.6 = 0.97 | between_species_paralog: NEWSINFRUG00000149366 | 5 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 35 (region 4 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 2 -i 176655149:176763176 -f 81e3 some_geneID_to_be_selected
scoreRatio_sum=5.48 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=2.07
AlnScore=2496 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 115 | 2 | 176762784 | 176763095 | 1 | 1 | 34.6% | 60% | 312 | 0.67 / 0.82 = 0.82 | noComparaHits: HOXD1 | 3 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 408 | 2 | 176742137 | 176745245 | 1 | 2 | 92.3% | 54.2% | 1221 | 0.5 / 0.51 = 0.98 | within_species_paralog: HOXD3 | 3 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 255.9 | 2 | 176724608 | 176725835 | 1 | 2 | 94.4% | 56% | 687 | 0.43 / 0.48 = 0.9 | within_species_paralog: HOXD4 | 4 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q3,q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 259 | 2 | 176703341 | 176704538 | 1 | 2 | 92.2% | 51.4% | 825 | 0.41 / 0.49 = 0.84 | within_species_paralog: HOXD8 | 3 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 240.1 | 2 | 176695773 | 176697131 | 1 | 2 | 74.4% | 60.4% | 591 | 0.53 / 0.53 = 1 | within_species_paralog: HOXD9 | 2 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 226 | 2 | 176666165 | 176667701 | 1 | 2 | 79.9% | 46.5% | 759 | 0.58 / 0.62 = 0.94 | within_species_paralog: HOXD13 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 36 (region 3 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 2 -i 74458603:74565135 -f 80e3 some_geneID_to_be_selected
scoreRatio_sum=5.44 log_scoreRatio_sum=-0.6 focal_scoreRatio_sum=2.05
AlnScore=2491 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 115 | 2 | 74564896 | 74565111 | 1 | 1 | 23.6% | 79.2% | 216 | 0.67 / 0.82 = 0.82 | noComparaHits: Hoxd1 | 3 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 412 | 2 | 74544899 | 74547915 | 1 | 2 | 92.3% | 53.6% | 1224 | 0.5 / 0.51 = 0.98 | between_species_paralog: Hoxd3 | 2 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 254 | 2 | 74528118 | 74529375 | 1 | 2 | 96.8% | 52.3% | 729 | 0.43 / 0.49 = 0.88 | noComparaHits: Hoxd3 | 3 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 253 | 2 | 74506387 | 74507600 | 1 | 2 | 92.2% | 50% | 819 | 0.41 / 0.5 = 0.82 | between_species_paralog: Hoxd8 | 2 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 240.1 | 2 | 74498895 | 74500242 | 1 | 2 | 70.8% | 62.9% | 558 | 0.53 / 0.53 = 1 | between_species_paralog: Hoxd9 | 2 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 229 | 2 | 74469449 | 74470972 | 1 | 2 | 78.5% | 47.1% | 744 | 0.58 / 0.62 = 0.94 | between_species_paralog: Hoxd13 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 37 (region 3 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 187420006:187538599 -f 89e3 some_geneID_to_be_selected
scoreRatio_sum=5.4 log_scoreRatio_sum=-0.65 focal_scoreRatio_sum=2.08
AlnScore=2468 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 115 | 4 | 187538285 | 187538500 | 1 | 1 | 23.6% | 79.2% | 216 | 0.67 / 0.82 = 0.82 | noComparaHits: HOXD1 | 3 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 388 | 4 | 187515862 | 187518908 | 1 | 2 | 92.3% | 53.5% | 1218 | 0.5 / 0.53 = 0.94 | between_species_paralog: HOXD3 | 3 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 250.3 | 4 | 187497377 | 187498610 | 1 | 2 | 94% | 57.3% | 663 | 0.43 / 0.5 = 0.86 | between_species_paralog: HOXD4 | 2 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q3,q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 248.2 | 4 | 187472546 | 187473868 | 1 | 2 | 92.2% | 48.1% | 876 | 0.41 / 0.51 = 0.8 | ortholog_one2many: HOXD8 | 1 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 252 | 4 | 187464529 | 187465943 | 1 | 2 | 72% | 64.8% | 546 | 0.53 / 0.51 = 1.04 | between_species_paralog: HOXD9 | 2 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 229 | 4 | 187431484 | 187433173 | 1 | 2 | 73.9% | 50% | 690 | 0.58 / 0.62 = 0.94 | between_species_paralog: HOXD13 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 38 (region 4 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 15 -i 102749366:102864077 -f 86e3 some_geneID_to_be_selected
scoreRatio_sum=5.19 log_scoreRatio_sum=-2.23 focal_scoreRatio_sum=2.1
AlnScore=2468 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 261.9 | 15 | 102862757 | 102863924 | 1 | 2 | 94.4% | 56.5% | 699 | 0.43 / 0.47 = 0.91 | between_species_paralog: Hoxc4 | 2 |
p5 | q2 | +/+ | ENSP00000239151 | HOXB5 | q2 | q2 | 186.5 | 15 | 102842116 | 102843461 | 1 | 2 | 95.5% | 41.5% | 681 | 0.4 / 0.65 = 0.62 | noComparaHits: Hoxc5
; mmu-mir-615 |
3 |
p6 | q3 | +/+ | ENSP00000225648 | HOXB6 | q3 | q3 | 190.6 | 15 | 102837640 | 102838979 | 1 | 2 | 91.1% | 52.9% | 597 | 0.47 / 0.6 = 0.78 | between_species_paralog: Hoxc6 | 3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q4 | +/+ | ENSP00000239165 | HOXB7 | q3 | q4 | 107 | 15 | 102820593 | 102820784 | 1 | 1 | 29.5% | 76.6% | 192 | 0.42 / 0.75 = 0.56 | noComparaHits: Hoxc8 | 10 |
p9 | q5 | +/+ | ENSP00000239144 | HOXB8 | q5 | q5 | 158 | 15 | 102818814 | 102819314 | 1 | 1 | 74.9% | 47.3% | 501 | 0.41 / 0.69 = 0.59 | between_species_paralog: Hoxc8 | 3 |
p10 | q6 | +/+ | ENSP00000309439 | HOXB9 | q6 | q6 | 237.8 | 15 | 102809687 | 102812152 | 1 | 2 | 80.8% | 55.3% | 669 | 0.53 / 0.54 = 0.98 | between_species_paralog: Hoxc9 | 3 |
--- | q7 | gapp | - | - | - | q7 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | +/+ | ENSP00000290295 | HOXB13 | q9 | q9 | 137 | 15 | 102749366 | 102749962 | 1 | 1 | 71.1% | 39.8% | 597 | 0.58 / 0.77 = 0.75 | between_species_paralog: Hoxc13 | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 39 (region 3 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 9 -i 4184078:4253192 -f 52e3 some_geneID_to_be_selected
scoreRatio_sum=5.04 log_scoreRatio_sum=-1.16 focal_scoreRatio_sum=2.24
AlnScore=2441 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 254 | 9 | 4251930 | 4253192 | 1 | 2 | 100% | 51.9% | 759 | 0.43 / 0.49 = 0.88 | between_species_paralog: GSTENG00028038001
; HOXC4 |
2 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000225648 | HOXB6 | q3 | q2 | 116 | 9 | 4243949 | 4244164 | 1 | 1 | 32.6% | 75.3% | 216 | 0.47 / 0.75 = 0.63 | noComparaHits: HOXC5
; GSTENG00028038001 |
5 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q3 | +/+ | ENSP00000239165 | HOXB7 | q3 | q3 | 128 | 9 | 4240506 | 4240787 | 1 | 1 | 38.7% | 67% | 282 | 0.42 / 0.7 = 0.6 | noComparaHits: GSTENG00028039001
; HOXC6 |
1 |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 299 | 9 | 4228016 | 4229940 | 1 | 2 | 86% | 68.5% | 639 | 0.41 / 0.41 = 1 | between_species_paralog: HOXC8 | 1 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 229.1 | 9 | 4222544 | 4224247 | 1 | 2 | 98.8% | 50.6% | 708 | 0.53 / 0.55 = 0.96 | between_species_paralog: HOXC9
; GSTENG00028039001 |
2 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000290295 | HOXB13 | q7 | q7 | 242 | 9 | 4184078 | 4186692 | 1 | 2 | 87.7% | 48.6% | 744 | 0.58 / 0.6 = 0.97 | between_species_paralog: HOXC13
; GSTENG00028043001 |
3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 40 (region 3 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 34124418:34685287 -f 42e4 some_geneID_to_be_selected
scoreRatio_sum=5.59 log_scoreRatio_sum=0.54 focal_scoreRatio_sum=1.36
AlnScore=2440 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
--- | q1 | gaps | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q2 | gaps | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q3 | gaps | - | - | - | q3 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q4 | gaps | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q5 | gaps | - | - | - | q5 | - | - | - | - | - | - | - | - | - | - | - | - |
p1 | q6 | +/+ | ENSP00000355140 | HOXB1 | q5 | q6 | 201.1 | 12 | 34648802 | 34649802 | -1 | 2 | 98.3% | 40.7% | 924 | 0.67 / 0.68 = 0.99 | noComparaHits: ENSDARG00000054033 | 3 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000308252 | HOXB3 | q4,q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | q4,q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q7 | +/+ | ENSP00000239151 | HOXB5 | q4,q7 | q7 | 377 | 12 | 34660335 | 34661610 | -1 | 2 | 99.6% | 69.5% | 825 | 0.4 / 0.31 = 1.29 | ortholog_one2many: hoxb5b | 2 |
p6 | q8 | +/+ | ENSP00000225648 | HOXB6 | q3 | q8 | 277 | 12 | 34663033 | 34664134 | -1 | 2 | 98.2% | 62.2% | 666 | 0.47 / 0.41 = 1.15 | ortholog_one2many: hoxb6b | 3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3,q8 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q9 | +/+ | ENSP00000239144 | HOXB8 | q2,q9 | q9 | 321 | 12 | 34671602 | 34673873 | -1 | 2 | 93% | 66.4% | 714 | 0.41 / 0.37 = 1.11 | ortholog_one2many: hoxb8b | 2 |
p10 | --- | gapq | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q10 | +/+ | ENSP00000302547 | TTLL6 | q1,q10 | q10 | 289.4 | 12 | 34681388 | 34685287 | -1 | 3 | 40.9% | 52.4% | 858 | 0.78 / 0.74 = 1.05 | ortholog_one2many: 564075 | 1 |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 41 (region 5 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 5 -i 16729819:16874819 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=4.91 log_scoreRatio_sum=-1.28 focal_scoreRatio_sum=2.02
AlnScore=2432 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 284 | 5 | 16729885 | 16731061 | -1 | 2 | 94.4% | 59.7% | 696 | 0.43 / 0.43 = 1 | ortholog_one2many: HOXC4 | 1 |
p5 | q2 | +/+ | ENSP00000239151 | HOXB5 | q2 | q2 | 183.4 | 5 | 16749689 | 16751039 | -1 | 2 | 93.7% | 42.7% | 648 | 0.4 / 0.66 = 0.61 | noComparaHits: HOXC5 | 3 |
p6 | q3 | +/+ | ENSP00000225648 | HOXB6 | q3 | q3 | 192.6 | 5 | 16754293 | 16755703 | -1 | 2 | 97.8% | 49.4% | 672 | 0.47 / 0.59 = 0.8 | between_species_paralog: Q28015_BOVIN | 3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 239 | 5 | 16772492 | 16774359 | -1 | 2 | 64.2% | 70.1% | 471 | 0.41 / 0.53 = 0.77 | between_species_paralog: HOXC8 | 2 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 237.8 | 5 | 16811884 | 16814511 | -1 | 2 | 80.8% | 55.3% | 669 | 0.53 / 0.54 = 0.98 | between_species_paralog: HOXC9 | 3 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000290295 | HOXB13 | q7 | q7 | 137 | 5 | 16874214 | 16874819 | -1 | 1 | 72.2% | 39.2% | 606 | 0.58 / 0.77 = 0.75 | between_species_paralog: HOXC13 | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 42 (region 4 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_163 -i 534745:661780 -f 95e3 some_geneID_to_be_selected
scoreRatio_sum=5.31 log_scoreRatio_sum=-0.74 focal_scoreRatio_sum=2.03
AlnScore=2416 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 120 | scaffold_163 | 534784 | 535026 | -1 | 1 | 26.9% | 74.4% | 243 | 0.67 / 0.81 = 0.83 | noComparaHits: hoxd1 | 3 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 375.5 | scaffold_163 | 567719 | 569313 | -1 | 2 | 93.5% | 51.4% | 1173 | 0.5 / 0.55 = 0.91 | between_species_paralog: HOXD3 | 2 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 241.8 | scaffold_163 | 582403 | 583439 | -1 | 2 | 92.8% | 50.2% | 720 | 0.43 / 0.51 = 0.84 | between_species_paralog: HOXD4 | 4 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 245 | scaffold_163 | 608304 | 609787 | -1 | 2 | 86% | 58.5% | 609 | 0.41 / 0.52 = 0.79 | between_species_paralog: HOXD8 | 3 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 240.4 | scaffold_163 | 619625 | 620793 | -1 | 2 | 77.6% | 58% | 600 | 0.53 / 0.53 = 1 | between_species_paralog: HOXD9 | 4 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 229 | scaffold_163 | 649607 | 652614 | -1 | 2 | 91.2% | 45.1% | 834 | 0.58 / 0.62 = 0.94 | between_species_paralog: HOXD13 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 43 (region 4 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 13886701:13954141 -f 51e3 some_geneID_to_be_selected
scoreRatio_sum=5.14 log_scoreRatio_sum=-0.93 focal_scoreRatio_sum=1.63
AlnScore=2326 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 119 | 19 | 13953821 | 13954138 | 1 | 1 | 34.6% | 62.6% | 318 | 0.67 / 0.81 = 0.83 | noComparaHits: hoxa1a | 4 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 364.8 | 19 | 13944458 | 13946294 | 1 | 2 | 92.8% | 51.8% | 1206 | 0.5 / 0.56 = 0.89 | between_species_paralog: hoxa3a | 3 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 223.1 | 19 | 13934404 | 13935528 | 1 | 2 | 94% | 50.6% | 678 | 0.43 / 0.55 = 0.78 | noComparaHits: ENSDARG00000057724
; hoxa3a |
4 |
p5 | q4 | +/+ | ENSP00000239151 | HOXB5 | q4 | q4 | 275 | 19 | 13926353 | 13927654 | 1 | 2 | 100% | 54.2% | 801 | 0.4 / 0.49 = 0.82 | between_species_paralog: hoxa5a | 3 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 200.2 | 19 | 13916949 | 13917988 | 1 | 2 | 70.4% | 57.5% | 516 | 0.53 / 0.61 = 0.87 | between_species_paralog: hoxa9a | 5 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 237 | 19 | 13896457 | 13897425 | 1 | 1 | 96.1% | 43.9% | 969 | 0.58 / 0.61 = 0.95 | between_species_paralog: hoxa13a | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 44 (region 3 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 27 -i 4211968:4324536 -f 84e3 some_geneID_to_be_selected
scoreRatio_sum=4.84 log_scoreRatio_sum=-1.38 focal_scoreRatio_sum=1.85
AlnScore=2314 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 285 | 27 | 4212034 | 4213230 | -1 | 2 | 94.4% | 59.9% | 693 | 0.43 / 0.43 = 1 | between_species_paralog: 486498 | 2 |
p5 | q2 | +/+ | ENSP00000239151 | HOXB5 | q2 | q2 | 187.5 | 27 | 4231293 | 4232665 | -1 | 2 | 95.5% | 44.5% | 681 | 0.4 / 0.65 = 0.62 | noComparaHits: 607625 | 3 |
p6 | q3 | +/+ | ENSP00000225648 | HOXB6 | q3 | q3 | 192.6 | 27 | 4236016 | 4237443 | -1 | 2 | 97.8% | 49.4% | 672 | 0.47 / 0.59 = 0.8 | between_species_paralog: 486499 | 3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 299 | 27 | 4254363 | 4256431 | -1 | 2 | 88.1% | 62.7% | 723 | 0.41 / 0.41 = 1 | between_species_paralog: 607052 | 2 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 124 | 27 | 4274772 | 4274990 | -1 | 1 | 29.2% | 75.3% | 219 | 0.53 / 0.76 = 0.7 | noComparaHits: HOXC10 | 4 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6,q7 | q6 | 117 | 27 | 4318394 | 4318702 | -1 | 1 | 35.9% | 56.1% | 309 | 0.58 / 0.8 = 0.72 | between_species_paralog: HOXC13 | 4 |
p13 | --- | gapq | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q7 | gape | - | - | - | q7 | - | - | - | - | - | - | - | - | - | - | - | - |
region 45 (region 3 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 12 -i 39722823:39831746 -f 82e3 some_geneID_to_be_selected
scoreRatio_sum=5.03 log_scoreRatio_sum=-1.09 focal_scoreRatio_sum=1.71
AlnScore=2194 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 114 | 12 | 39831426 | 39831737 | 1 | 1 | 34.6% | 58.1% | 312 | 0.67 / 0.82 = 0.82 | noComparaHits: HOXD1 | 3 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 409 | 12 | 39810806 | 39813914 | 1 | 2 | 92.3% | 54.4% | 1221 | 0.5 / 0.51 = 0.98 | between_species_paralog: HOXD3 | 3 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 246.7 | 12 | 39793366 | 39794593 | 1 | 2 | 94.4% | 55.5% | 687 | 0.43 / 0.5 = 0.86 | between_species_paralog: HOXD4 | 2 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q3,q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 230.7 | 12 | 39772043 | 39772898 | 1 | 2 | 62.6% | 71.4% | 459 | 0.41 / 0.55 = 0.75 | between_species_paralog: HOXD8 | 2 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 122 | 12 | 39760168 | 39760383 | 1 | 1 | 28.8% | 75% | 216 | 0.53 / 0.76 = 0.7 | noComparaHits: HOXD10 | 6 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 225 | 12 | 39734026 | 39735562 | 1 | 2 | 79.9% | 46% | 762 | 0.58 / 0.63 = 0.92 | between_species_paralog: HOXD13 | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 46 (region 5 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2643 -i 4961:46955 -f 31e3 some_geneID_to_be_selected
scoreRatio_sum=4.13 log_scoreRatio_sum=-1.07 focal_scoreRatio_sum=1.82
AlnScore=2146 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 261 | contig_2643 | 14618 | 15813 | -1 | 2 | 94% | 56.5% | 687 | 0.43 / 0.47 = 0.91 | noComparaHits: ENSGACG00000009421 | 2 |
p5 | q2 | +/+ | ENSP00000239151 | HOXB5 | q2 | q2 | 124 | contig_2643 | 24707 | 24898 | -1 | 1 | 23.8% | 85.9% | 192 | 0.4 / 0.77 = 0.52 | noComparaHits: ENSGACG00000009416 | 6 |
p6 | q3 | +/+ | ENSP00000225648 | HOXB6 | q3 | q3 | 179.4 | contig_2643 | 28355 | 29473 | -1 | 2 | 96% | 49.1% | 639 | 0.47 / 0.62 = 0.76 | noComparaHits: Q4VQD3_GASAC | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 298 | contig_2643 | 39207 | 41140 | -1 | 2 | 86.8% | 65.5% | 672 | 0.41 / 0.42 = 0.98 | noComparaHits: ENSGACG00000009401 | 1 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 233.7 | contig_2643 | 45188 | 46955 | -1 | 2 | 98.8% | 51% | 705 | 0.53 / 0.55 = 0.96 | noComparaHits: ENSGACG00000009396 | 1 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 47 (region 4 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 36 -i 22916593:23023331 -f 80e3 some_geneID_to_be_selected
scoreRatio_sum=4.75 log_scoreRatio_sum=-1.42 focal_scoreRatio_sum=1.67
AlnScore=1984 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 110 | 36 | 23023017 | 23023322 | 1 | 1 | 33.9% | 57.3% | 306 | 0.67 / 0.82 = 0.82 | noComparaHits: | 3 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 394 | 36 | 23003981 | 23007248 | 1 | 2 | 92.3% | 53.2% | 1218 | 0.5 / 0.53 = 0.94 | between_species_paralog: HOXD3 | 3 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 216.2 | 36 | 22987182 | 22988275 | 1 | 2 | 52.2% | 77.1% | 387 | 0.43 / 0.56 = 0.77 | between_species_paralog: HOXD4 | 3 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 231.7 | 36 | 22966030 | 22966902 | 1 | 2 | 62.6% | 71.4% | 459 | 0.41 / 0.54 = 0.76 | between_species_paralog: HOXD8 | 3 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 145 | 36 | 22958879 | 22959100 | 1 | 1 | 29.6% | 89.2% | 222 | 0.53 / 0.72 = 0.74 | noComparaHits: ENSCAFG00000023404 | 3 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 121 | 36 | 22929108 | 22929335 | 1 | 1 | 26.8% | 71.1% | 228 | 0.58 / 0.8 = 0.72 | noComparaHits: | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 48 (region 4 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 19 -i 17578415:17604302 -f 19e3 some_geneID_to_be_selected
scoreRatio_sum=4.92 log_scoreRatio_sum=-0.2 focal_scoreRatio_sum=0.86
AlnScore=1925 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 179.9 | 19 | 17578478 | 17579423 | -1 | 2 | 86% | 41.9% | 762 | 0.67 / 0.71 = 0.94 | noComparaHits: Q3V613_ORYLA | 1 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 144 | 19 | 17580572 | 17581048 | -1 | 1 | 39.7% | 50.6% | 477 | 0.5 / 0.82 = 0.61 | noComparaHits: Q3V612_ORYLA | 4 |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000239151 | HOXB5 | q3 | q3 | 348 | 19 | 17590222 | 17591540 | -1 | 2 | 99.3% | 64.6% | 837 | 0.4 / 0.36 = 1.11 | ortholog_one2many: Q3V611_ORYLA | 1 |
p6 | q4 | +/+ | ENSP00000225648 | HOXB6 | q4 | q4 | 288 | 19 | 17592684 | 17594165 | -1 | 2 | 99.1% | 60.4% | 702 | 0.47 / 0.39 = 1.21 | ortholog_one2many: Q9PVR5_ORYLA | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q5 | +/+ | ENSP00000302547 | TTLL6 | q5 | q5 | 288.8 | 19 | 17602729 | 17604302 | -1 | 3 | 35.3% | 60.9% | 660 | 0.78 / 0.74 = 1.05 | noComparaHits: | 1 |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 49 (region 4 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 11 -i 51037121:51154547 -f 88e3 some_geneID_to_be_selected
scoreRatio_sum=4.31 log_scoreRatio_sum=-2.09 focal_scoreRatio_sum=1.96
AlnScore=1921 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 166 | 11 | 51154170 | 51154481 | 1 | 1 | 55.4% | 63.3% | 312 | 0.43 / 0.66 = 0.65 | between_species_paralog: HOXC4 | 3 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000225648 | HOXB6 | q2 | q2 | 192.6 | 11 | 51127353 | 51128769 | 1 | 2 | 97.8% | 49.4% | 672 | 0.47 / 0.59 = 0.8 | between_species_paralog: HOXC6 | 3 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q3 | +/+ | ENSP00000239165 | HOXB7 | q2 | q3 | 107 | 11 | 51109492 | 51109671 | 1 | 1 | 27.6% | 80% | 180 | 0.42 / 0.75 = 0.56 | noComparaHits: HOXC8 | 8 |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 157 | 11 | 51107689 | 51108153 | 1 | 1 | 70% | 48.9% | 465 | 0.41 / 0.69 = 0.59 | between_species_paralog: HOXC8 | 3 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 239 | 11 | 51098616 | 51101071 | 1 | 2 | 98.8% | 45.6% | 939 | 0.53 / 0.54 = 0.98 | between_species_paralog: HOXC9 | 2 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q7 | gapp | - | - | - | q7 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000290295 | HOXB13 | q8 | q8 | 126 | 11 | 51037121 | 51037717 | 1 | 1 | 71.1% | 37.9% | 597 | 0.58 / 0.79 = 0.73 | between_species_paralog: HOXC13 | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 50 (region 4 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_130 -i 619602:642315 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=4.97 log_scoreRatio_sum=-0.17 focal_scoreRatio_sum=0.87
AlnScore=1921 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 195.4 | scaffold_130 | 641213 | 642255 | 1 | 2 | 87.4% | 45.6% | 816 | 0.67 / 0.69 = 0.97 | noComparaHits: NEWSINFRUG00000166087
; NEWSINFRUG00000131120 |
1 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 125 | scaffold_130 | 639540 | 639887 | 1 | 1 | 26.5% | 55.8% | 348 | 0.5 / 0.85 = 0.59 | noComparaHits: NEWSINFRUG00000161068 | 4 |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000239151 | HOXB5 | q3 | q3 | 351 | scaffold_130 | 630265 | 631534 | 1 | 2 | 99.3% | 66.1% | 834 | 0.4 / 0.35 = 1.14 | ortholog_one2many: NEWSINFRUG00000132774 | 1 |
p6 | q4 | +/+ | ENSP00000225648 | HOXB6 | q4 | q4 | 292 | scaffold_130 | 627432 | 629055 | 1 | 2 | 99.1% | 62.2% | 696 | 0.47 / 0.38 = 1.24 | ortholog_one2many: NEWSINFRUG00000156875 | 1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q5 | +/+ | ENSP00000302547 | TTLL6 | q5 | q5 | 267.4 | scaffold_130 | 619602 | 620451 | 1 | 3 | 34.8% | 62.1% | 609 | 0.78 / 0.76 = 1.03 | ortholog_one2one: NEWSINFRUG00000132771 | 1 |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 51 (region 4 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 2 -i 1166948:1444911 -f 21e4 some_geneID_to_be_selected
scoreRatio_sum=4.73 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=0.82
AlnScore=1819 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 197.3 | 2 | 1421789 | 1422735 | -1 | 2 | 95.3% | 43.6% | 849 | 0.67 / 0.69 = 0.97 | noComparaHits: HOXBb1
; GSTENG00019145001 ; GSTENG00039005450 |
1 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 108 | 2 | 1424212 | 1424409 | -1 | 1 | 15.3% | 80.3% | 198 | 0.5 / 0.87 = 0.57 | noComparaHits: HOXBb3
; GSTENG00019144001 |
5 |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000239151 | HOXB5 | q3 | q3 | 345 | 2 | 1432898 | 1434137 | -1 | 2 | 99.3% | 64.5% | 831 | 0.4 / 0.37 = 1.08 | ortholog_one2many: HOXBb5 | 1 |
p6 | q4 | +/+ | ENSP00000225648 | HOXB6 | q4 | q4 | 281 | 2 | 1435426 | 1437034 | -1 | 2 | 94.2% | 58.8% | 711 | 0.47 / 0.41 = 1.15 | ortholog_one2many: GSTENG00019143001
; HOXBb6 |
1 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q5 | +/+ | ENSP00000302547 | TTLL6 | q5 | q5 | 208.5 | 2 | 1444367 | 1444911 | -1 | 2 | 23.7% | 66.9% | 444 | 0.78 / 0.81 = 0.96 | ortholog_one2one: GSTENG00019142001 | 1 |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 52 (region 3 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 7 -i 17361456:17445827 -f 63e3 some_geneID_to_be_selected
scoreRatio_sum=4.49 log_scoreRatio_sum=-1.77 focal_scoreRatio_sum=1.57
AlnScore=1763 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 107 | 7 | 17361483 | 17361710 | -1 | 1 | 26.2% | 65.8% | 228 | 0.67 / 0.83 = 0.81 | noComparaHits: HM1_CHICK | 4 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 364 | 7 | 17369712 | 17371223 | -1 | 1 | 100% | 45.5% | 1512 | 0.5 / 0.56 = 0.89 | between_species_paralog: HOXD3 | 3 |
p4 | q3 | +/+ | ENSP00000328928 | HOXB4 | q3 | q3 | 162 | 7 | 17386801 | 17387163 | -1 | 1 | 57.4% | 61.4% | 363 | 0.43 / 0.67 = 0.64 | between_species_paralog: HXD4_CHICK | 3 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000239144 | HOXB8 | q4 | q4 | 239.9 | 7 | 17402562 | 17404435 | -1 | 2 | 62.6% | 70.8% | 489 | 0.41 / 0.53 = 0.77 | noComparaHits: NP_997060.1 | 2 |
p10 | q5 | +/+ | ENSP00000309439 | HOXB9 | q5 | q5 | 100 | 7 | 17409431 | 17409745 | -1 | 1 | 41.2% | 45.7% | 315 | 0.53 / 0.8 = 0.66 | noComparaHits: NP_997060.1 | 5 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q6 | +/+ | ENSP00000290295 | HOXB13 | q6 | q6 | 119 | 7 | 17438755 | 17438982 | -1 | 1 | 26.8% | 69.7% | 228 | 0.58 / 0.8 = 0.72 | between_species_paralog: HXD13_CHICK | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 53 (region 5 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 1312491:1619897 -f 23e4 some_geneID_to_be_selected
scoreRatio_sum=2.79 log_scoreRatio_sum=-0.22 focal_scoreRatio_sum=1.26
AlnScore=1396 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 379.7 | 9 | 1553343 | 1554744 | -1 | 2 | 94% | 52.2% | 1182 | 0.5 / 0.54 = 0.93 | noComparaHits: ENSDARG00000059280
; hoxd3a |
2 |
p4 | q2 | +/+ | ENSP00000328928 | HOXB4 | q2 | q2 | 243 | 9 | 1565337 | 1566370 | -1 | 2 | 91.6% | 54.7% | 645 | 0.43 / 0.51 = 0.84 | between_species_paralog: hoxd4a | 3 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q3 | +/+ | ENSP00000309439 | HOXB9 | q3 | q3 | 245 | 9 | 1580195 | 1581290 | -1 | 2 | 100% | 45.3% | 852 | 0.53 / 0.52 = 1.02 | between_species_paralog: hoxd9a | 2 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 54 (region 5 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 21 -i 24591355:24637174 -f 34e3 some_geneID_to_be_selected
scoreRatio_sum=2.67 log_scoreRatio_sum=-0.34 focal_scoreRatio_sum=1.14
AlnScore=1343 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 385.3 | 21 | 24635889 | 24637174 | 1 | 2 | 94% | 53.4% | 1185 | 0.5 / 0.54 = 0.93 | between_species_paralog: Q3V5Z9_ORYLA | 2 |
p4 | q2 | +/+ | ENSP00000328928 | HOXB4 | q2 | q2 | 240.3 | 21 | 24626722 | 24627754 | 1 | 2 | 94% | 53.3% | 660 | 0.43 / 0.52 = 0.83 | between_species_paralog: Q3V5Z8_ORYLA | 3 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q3 | +/+ | ENSP00000309439 | HOXB9 | q3 | q3 | 217.2 | 21 | 24614922 | 24616096 | 1 | 2 | 70.4% | 57.4% | 528 | 0.53 / 0.58 = 0.91 | between_species_paralog: HXD9_ORYLA | 2 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 55 (region 5 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 2 -i 11075386:11117989 -f 32e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=1.12
AlnScore=1332 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 377.8 | 2 | 11075386 | 11076667 | -1 | 2 | 97.9% | 51.4% | 1200 | 0.5 / 0.55 = 0.91 | between_species_paralog: GSTENG00031464001
; HOXD3 |
3 |
p4 | q2 | +/+ | ENSP00000328928 | HOXB4 | q2 | q2 | 248 | 2 | 11087965 | 11088977 | -1 | 3 | 93.2% | 51.7% | 726 | 0.43 / 0.5 = 0.86 | between_species_paralog: GSTENG00031463001
; HOXD4 |
3 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q3 | +/+ | ENSP00000309439 | HOXB9 | q3 | q3 | 207.5 | 2 | 11097829 | 11098947 | -1 | 2 | 70% | 54.1% | 531 | 0.53 / 0.6 = 0.88 | between_species_paralog: GSTENG00031462001 | 3 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 56 (region 6 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5303 -i 230508:277218 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=1.16
AlnScore=1325 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 394 | contig_5303 | 275876 | 277218 | 1 | 2 | 100% | 51.6% | 1287 | 0.5 / 0.53 = 0.94 | noComparaHits: ENSGACG00000004548 | 3 |
p4 | q2 | +/+ | ENSP00000328928 | HOXB4 | q2 | q2 | 223.9 | contig_5303 | 266163 | 267205 | 1 | 2 | 92.4% | 52.3% | 648 | 0.43 / 0.55 = 0.78 | noComparaHits: ENSGACG00000004551 | 4 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q3 | +/+ | ENSP00000309439 | HOXB9 | q3 | q3 | 219.7 | contig_5303 | 254049 | 255336 | 1 | 3 | 67.6% | 57.2% | 522 | 0.53 / 0.57 = 0.93 | noComparaHits: Q4VQD4_GASAC | 2 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 57 (region 7 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXVI -i 9792262:9838972 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=1.16
AlnScore=1325 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 394 | groupXVI | 9792262 | 9793604 | -1 | 2 | 100% | 51.6% | 1287 | 0.5 / 0.53 = 0.94 | between_species_paralog: ENSGACG00000004548 | 3 |
p4 | q2 | +/+ | ENSP00000328928 | HOXB4 | q2 | q2 | 223.9 | groupXVI | 9802275 | 9803317 | -1 | 2 | 92.4% | 52.3% | 648 | 0.43 / 0.55 = 0.78 | between_species_paralog: ENSGACG00000004551 | 4 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q3 | +/+ | ENSP00000309439 | HOXB9 | q3 | q3 | 219.7 | groupXVI | 9814144 | 9815431 | -1 | 3 | 67.6% | 57.2% | 522 | 0.53 / 0.57 = 0.93 | between_species_paralog: Q4VQD4_GASAC | 2 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 58 (region 6 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 24709922:24717334 -f 56e2 some_geneID_to_be_selected
scoreRatio_sum=3.28 log_scoreRatio_sum=-0.25 focal_scoreRatio_sum=1.35
AlnScore=1322 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000225648 | HOXB6 | q1 | q1 | 129 | 3 | 24709925 | 24710173 | -1 | 1 | 34.8% | 74.7% | 249 | 0.47 / 0.72 = 0.65 | noComparaHits: hoxb7a | 5 |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q2 | +/+ | ENSP00000239165 | HOXB7 | q1 | q2 | 115 | 3 | 24713322 | 24713747 | -1 | 1 | 61.8% | 47.6% | 426 | 0.42 / 0.73 = 0.58 | ortholog_one2many: hoxb7a | 10 |
p9 | q3 | +/+ | ENSP00000239144 | HOXB8 | q3 | q3 | 408 | 3 | 24715856 | 24717334 | -1 | 2 | 99.2% | 78.9% | 723 | 0.41 / 0.2 = 2.05 | ortholog_one2many: hoxb8a | 1 |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 59 (region 5 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_100 -i 339085:379367 -f 30e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=1.14
AlnScore=1316 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 374.2 | scaffold_100 | 339085 | 340364 | -1 | 2 | 99.5% | 49.9% | 1221 | 0.5 / 0.55 = 0.91 | between_species_paralog: NEWSINFRUG00000124774 | 3 |
p4 | q2 | +/+ | ENSP00000328928 | HOXB4 | q2 | q2 | 236 | scaffold_100 | 348462 | 349464 | -1 | 2 | 93.2% | 54% | 651 | 0.43 / 0.52 = 0.83 | between_species_paralog: NEWSINFRUG00000124775 | 3 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q3 | +/+ | ENSP00000309439 | HOXB9 | q3 | q3 | 214 | scaffold_100 | 358383 | 359535 | -1 | 2 | 100% | 45.2% | 792 | 0.53 / 0.58 = 0.91 | between_species_paralog: NEWSINFRUG00000124776 | 2 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 60 (region 7 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 21167797:21201570 -f 25e3 some_geneID_to_be_selected
scoreRatio_sum=2.94 log_scoreRatio_sum=-0.06 focal_scoreRatio_sum=1.37
AlnScore=1270 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 289 | 16 | 21199897 | 21201570 | 1 | 2 | 96.1% | 48.8% | 1041 | 0.55 / 0.58 = 0.95 | between_species_paralog: hoxa2b | 2 |
p3 | --- | gapq | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 212.5 | 16 | 21188212 | 21189738 | 1 | 2 | 100% | 48.6% | 735 | 0.53 / 0.59 = 0.9 | between_species_paralog: hoxa9b | 4 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | +/+ | ENSP00000290295 | HOXB13 | q3 | q3 | 284 | 16 | 21167797 | 21168969 | 1 | 2 | 91.5% | 54.4% | 762 | 0.58 / 0.53 = 1.09 | between_species_paralog: hoxa13b | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 61 (region 8 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9872 -i 61560:92599 -f 23e3 some_geneID_to_be_selected
scoreRatio_sum=3.05 log_scoreRatio_sum=0.03 focal_scoreRatio_sum=0.35
AlnScore=1232 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 134 | contig_9872 | 61560 | 61895 | -1 | 1 | 36.2% | 67.3% | 336 | 0.67 / 0.79 = 0.85 | noComparaHits: ENSGACG00000005635 | 3 |
p2 | q2 | +/+ | ENSP00000331741 | HOXB2 | q2 | q2 | 323 | contig_9872 | 79266 | 81838 | -1 | 2 | 97.5% | 47.8% | 1275 | 0.55 / 0.53 = 1.04 | noComparaHits: ENSGACG00000005633 | 1 |
p3 | q3 | +/+ | ENSP00000308252 | HOXB3 | q3 | q3 | 474.1 | contig_9872 | 88587 | 92599 | -1 | 3 | 97% | 58.7% | 1350 | 0.5 / 0.43 = 1.16 | noComparaHits: ENSGACG00000005631 | 1 |
p4 | --- | gape | ENSP00000328928 | HOXB4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 62 (region 9 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupV -i 4094325:4626033 -f 40e4 some_geneID_to_be_selected
scoreRatio_sum=3.35 log_scoreRatio_sum=-0.78 focal_scoreRatio_sum=0.55
AlnScore=1145 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 184.5 | groupV | 4598424 | 4599467 | -1 | 2 | 86.4% | 45.3% | 786 | 0.67 / 0.71 = 0.94 | noComparaHits: ENSGACG00000003939 | 2 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 130 | groupV | 4600962 | 4601318 | -1 | 1 | 26.2% | 57.1% | 357 | 0.5 / 0.84 = 0.6 | noComparaHits: ENSGACG00000003942 | 4 |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000239151 | HOXB5 | q3 | q3 | 274 | groupV | 4610442 | 4613708 | -1 | 2 | 84.4% | 59.2% | 771 | 0.4 / 0.5 = 0.8 | ortholog_one2many: ENSGACG00000003945 | 3 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q4 | +/+ | ENSP00000302547 | TTLL6 | q4 | q4 | 254 | groupV | 4625080 | 4626033 | -1 | 2 | 35% | 55.2% | 690 | 0.78 / 0.77 = 1.01 | ortholog_one2one: ENSGACG00000003950 | 1 |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 63 (region 10 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1095 -i 26429:50116 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=2.62 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=1.17
AlnScore=1030 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 234 | contig_1095 | 48561 | 50116 | 1 | 2 | 96.6% | 44.7% | 1014 | 0.55 / 0.66 = 0.83 | noComparaHits: ENSGACG00000008314 | 3 |
p3 | --- | gapq | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 133 | contig_1095 | 43338 | 43568 | 1 | 1 | 30.8% | 79.2% | 231 | 0.53 / 0.74 = 0.72 | noComparaHits: ENSGACG00000008310 | 7 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | +/+ | ENSP00000290295 | HOXB13 | q3 | q3 | 279 | contig_1095 | 26429 | 27479 | 1 | 2 | 96.1% | 52.1% | 813 | 0.58 / 0.54 = 1.07 | noComparaHits: ENSGACG00000008296 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 64 (region 11 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXX -i 9710669:9734356 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=2.62 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=1.17
AlnScore=1030 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 234 | groupXX | 9732801 | 9734356 | 1 | 2 | 96.6% | 44.7% | 1014 | 0.55 / 0.66 = 0.83 | between_species_paralog: ENSGACG00000008314 | 3 |
p3 | --- | gapq | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 133 | groupXX | 9727578 | 9727808 | 1 | 1 | 30.8% | 79.2% | 231 | 0.53 / 0.74 = 0.72 | between_species_paralog: ENSGACG00000008310 | 7 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | +/+ | ENSP00000290295 | HOXB13 | q3 | q3 | 279 | groupXX | 9710669 | 9711719 | 1 | 2 | 96.1% | 52.1% | 813 | 0.58 / 0.54 = 1.07 | between_species_paralog: ENSGACG00000008296 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 65 (region 6 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_48 -i 1056667:1085909 -f 22e3 some_geneID_to_be_selected
scoreRatio_sum=2.56 log_scoreRatio_sum=-0.49 focal_scoreRatio_sum=1.14
AlnScore=995 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 246.3 | scaffold_48 | 1056667 | 1058129 | -1 | 2 | 93.3% | 48.5% | 984 | 0.55 / 0.64 = 0.86 | between_species_paralog: NEWSINFRUG00000138063 | 3 |
p3 | --- | gapq | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 134 | scaffold_48 | 1063099 | 1063329 | -1 | 1 | 30.8% | 79.2% | 231 | 0.53 / 0.74 = 0.72 | between_species_paralog: NEWSINFRUG00000138062 | 6 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | +/+ | ENSP00000290295 | HOXB13 | q3 | q3 | 246 | scaffold_48 | 1084992 | 1085909 | -1 | 1 | 94.4% | 45.4% | 918 | 0.58 / 0.59 = 0.98 | between_species_paralog: NEWSINFRUG00000132089 | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 66 (region 6 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 16 -i 13115273:13137431 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=2.56 log_scoreRatio_sum=-0.51 focal_scoreRatio_sum=1.16
AlnScore=983 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 203 | 16 | 13135966 | 13137431 | 1 | 2 | 93.5% | 43.3% | 936 | 0.55 / 0.71 = 0.77 | between_species_paralog: Q3V627_ORYLA | 3 |
p3 | --- | gapq | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 131 | 16 | 13131574 | 13131804 | 1 | 1 | 30.8% | 77.9% | 231 | 0.53 / 0.74 = 0.72 | between_species_paralog: Q3V626_ORYLA | 6 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | +/+ | ENSP00000290295 | HOXB13 | q3 | q3 | 280 | 16 | 13115273 | 13116159 | 1 | 2 | 90.5% | 54.2% | 759 | 0.58 / 0.54 = 1.07 | between_species_paralog: Q3V623_ORYLA | 1 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 67 (region 12 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_6417 -i 33864:49226 -f 12e3 some_geneID_to_be_selected
scoreRatio_sum=2.34 log_scoreRatio_sum=-0.79 focal_scoreRatio_sum=0.3
AlnScore=938 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000355140 | HOXB1 | q1 | q1 | 184.5 | contig_6417 | 33942 | 34985 | -1 | 2 | 86.4% | 45.3% | 786 | 0.67 / 0.71 = 0.94 | noComparaHits: ENSGACG00000003939 | 2 |
p2 | --- | gapq | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000308252 | HOXB3 | q2 | q2 | 130 | contig_6417 | 36480 | 36836 | -1 | 1 | 26.2% | 57.1% | 357 | 0.5 / 0.84 = 0.6 | noComparaHits: ENSGACG00000003942 | 4 |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000239151 | HOXB5 | q3 | q3 | 274 | contig_6417 | 45960 | 49226 | -1 | 2 | 84.4% | 59.2% | 771 | 0.4 / 0.5 = 0.8 | noComparaHits: | 3 |
p6 | --- | gape | ENSP00000225648 | HOXB6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 68 (region 7 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_346 -i 187165:226465 -f 29e3 some_geneID_to_be_selected
scoreRatio_sum=1.69 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.43
AlnScore=836 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000239151 | HOXB5 | q1 | q1 | 268 | scaffold_346 | 225068 | 226426 | 1 | 2 | 98.1% | 52.3% | 804 | 0.4 / 0.51 = 0.78 | between_species_paralog: NEWSINFRUG00000149630 | 3 |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q2 | +/+ | ENSP00000290295 | HOXB13 | q2 | q2 | 219 | scaffold_346 | 195270 | 196163 | 1 | 2 | 59.2% | 61.3% | 519 | 0.58 / 0.64 = 0.91 | between_species_paralog: NEWSINFRUG00000162059 | 6 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 69 (region 4 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 27778821:27810035 -f 23e3 some_geneID_to_be_selected
scoreRatio_sum=2.01 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=1.14
AlnScore=823 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | /+ | ENSP00000239165 | HOXB7 | q1 | q1 | 299 | Un_random | 27806968 | 27810035 | -1 | 2 | 88% | 75.4% | 570 | 0.42 / 0.32 = 1.31 | ortholog_one2one: HOXB7 | 1 |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | /+ | ENSP00000309439 | HOXB9 | q2 | q2 | 124 | Un_random | 27778827 | 27779045 | -1 | 1 | 29.2% | 75.3% | 219 | 0.53 / 0.76 = 0.7 | noComparaHits: 430550 | 4 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 70 (region 13 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9874 -i 2478:8413 -f 45e2 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=-0.56 focal_scoreRatio_sum=0.27
AlnScore=811 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000239151 | HOXB5 | q1 | q1 | 280 | contig_9874 | 2478 | 4382 | -1 | 2 | 82.2% | 63% | 765 | 0.4 / 0.48 = 0.83 | noComparaHits: ENSGACG00000005626 | 1 |
p6 | q2 | +/+ | ENSP00000225648 | HOXB6 | q2 | q2 | 144 | contig_9874 | 8132 | 8413 | -1 | 1 | 38.4% | 74.5% | 282 | 0.47 / 0.69 = 0.68 | noComparaHits: ENSGACG00000005623 | 2 |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 71 (region 6 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 8 -i 6607022:6627492 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=2.3 log_scoreRatio_sum=-0.8 focal_scoreRatio_sum=1.06
AlnScore=780 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 248.4 | 8 | 6626031 | 6627492 | 1 | 2 | 97.8% | 47% | 1002 | 0.55 / 0.64 = 0.86 | between_species_paralog: HOXAb2 | 3 |
p3 | --- | gapq | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 135 | 8 | 6620995 | 6621225 | 1 | 1 | 30.8% | 80.5% | 231 | 0.53 / 0.74 = 0.72 | between_species_paralog: HOXAb9 | 5 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | +/+ | ENSP00000290295 | HOXB13 | q3 | q3 | 112 | 8 | 6607043 | 6607243 | 1 | 1 | 23.6% | 77.6% | 201 | 0.58 / 0.81 = 0.72 | between_species_paralog: HOXAb13
; GSTENG00034119001 |
4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 72 (region 6 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 4 -i 40097990:40179412 -f 61e3 some_geneID_to_be_selected
scoreRatio_sum=1.84 log_scoreRatio_sum=-0.16 focal_scoreRatio_sum=1.25
AlnScore=760 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000309439 | HOXB9 | q1 | q1 | 229.6 | 4 | 40177480 | 40179373 | 1 | 2 | 94.8% | 49.2% | 762 | 0.53 / 0.55 = 0.96 | between_species_paralog: HOXA9 | 4 |
--- | q2 | gapp | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | +/+ | ENSP00000290295 | HOXB13 | q3 | q3 | 202 | 4 | 40142887 | 40144079 | 1 | 2 | 51.4% | 64.2% | 453 | 0.58 / 0.66 = 0.88 | between_species_paralog: HOXA13 | 3 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 73 (region 8 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 25215421:25218683 -f 24e2 some_geneID_to_be_selected
scoreRatio_sum=1.83 log_scoreRatio_sum=0.6 focal_scoreRatio_sum=1.83
AlnScore=703 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000309439 | HOXB9 | q1 | q1 | 366 | 24 | 25215421 | 25218683 | 1 | 2 | 100% | 72.7% | 759 | 0.53 / 0.29 = 1.83 | ortholog_one2many: hoxb9a | 1 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 74 (region 14 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2345 -i 69:24000 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=1.74 log_scoreRatio_sum=-0.31 focal_scoreRatio_sum=1.04
AlnScore=663 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000309439 | HOXB9 | q1 | q1 | 117 | contig_2345 | 4584 | 4796 | -1 | 1 | 28.4% | 73.2% | 213 | 0.53 / 0.77 = 0.69 | noComparaHits: ENSGACG00000007128 | 10 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q2 | +/+ | ENSP00000290295 | HOXB13 | q2 | q2 | 268 | contig_2345 | 22662 | 24000 | -1 | 2 | 94.4% | 52.9% | 807 | 0.58 / 0.55 = 1.05 | noComparaHits: Q9PWC4_GASAC | 4 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 75 (region 15 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9877 -i 4239:26330 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=1.4 log_scoreRatio_sum=-0.72 focal_scoreRatio_sum=0.99
AlnScore=617 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000239165 | HOXB7 | q1 | q1 | 134 | contig_9877 | 4239 | 4511 | -1 | 1 | 38.7% | 70.3% | 273 | 0.42 / 0.69 = 0.61 | noComparaHits: | 1 |
--- | q2 | gapp | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q3 | +/+ | ENSP00000309439 | HOXB9 | q3 | q3 | 169 | contig_9877 | 25719 | 26330 | -1 | 1 | 69.2% | 51.5% | 612 | 0.53 / 0.67 = 0.79 | noComparaHits: | 4 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 76 (region 16 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9873 -i 2007:4245 -f 17e2 some_geneID_to_be_selected
scoreRatio_sum=1.05 log_scoreRatio_sum=0.05 focal_scoreRatio_sum=0.15
AlnScore=586 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 294 | contig_9873 | 2007 | 4245 | -1 | 2 | 92% | 62.3% | 732 | 0.43 / 0.41 = 1.05 | noComparaHits: ENSGACG00000005628 | 1 |
p5 | --- | gape | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 77 (region 8 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_3809 -i 3209:5738 -f 19e2 some_geneID_to_be_selected
scoreRatio_sum=1.04 log_scoreRatio_sum=0.04 focal_scoreRatio_sum=0.21
AlnScore=547 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000225648 | HOXB6 | q1 | q1 | 261 | scaffold_3809 | 3209 | 5738 | 1 | 2 | 100% | 55.4% | 825 | 0.47 / 0.45 = 1.04 | ortholog_one2many: NEWSINFRUG00000159821 | 2 |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 78 (region 7 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 15 -i 4350826:4374607 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.83 focal_scoreRatio_sum=0.8
AlnScore=533 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 147 | 15 | 4350829 | 4351065 | -1 | 1 | 31.5% | 84.8% | 237 | 0.43 / 0.7 = 0.61 | noComparaHits: Q3V5Z3_ORYLA | 5 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 130 | 15 | 4374398 | 4374607 | -1 | 1 | 28% | 85.7% | 210 | 0.53 / 0.75 = 0.71 | noComparaHits: Q9PVR1_ORYLA | 7 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 79 (region 17 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupVI -i 16155941:16182581 -f 20e3 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.83 focal_scoreRatio_sum=0.8
AlnScore=521 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 142 | groupVI | 16182336 | 16182578 | 1 | 1 | 32.3% | 81.5% | 243 | 0.43 / 0.71 = 0.61 | noComparaHits: ENSGACG00000011907 | 5 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 129 | groupVI | 16162361 | 16162570 | 1 | 1 | 28% | 84.3% | 210 | 0.53 / 0.75 = 0.71 | noComparaHits: ENSGACG00000011902 | 8 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 80 (region 9 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_39 -i 578897:598598 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=1.31 log_scoreRatio_sum=-0.84 focal_scoreRatio_sum=0.8
AlnScore=517 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 140 | scaffold_39 | 598380 | 598598 | 1 | 1 | 29.1% | 84.9% | 219 | 0.43 / 0.72 = 0.6 | noComparaHits: NEWSINFRUG00000162165 | 5 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 129 | scaffold_39 | 584702 | 584911 | 1 | 1 | 28% | 84.3% | 210 | 0.53 / 0.75 = 0.71 | noComparaHits: Q4VN43_FUGRU | 7 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 81 (region 7 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 17 -i 9571355:9594639 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=1.29 log_scoreRatio_sum=-0.87 focal_scoreRatio_sum=0.77
AlnScore=486 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 143 | 17 | 9594403 | 9594639 | 1 | 1 | 31.5% | 82.3% | 237 | 0.43 / 0.71 = 0.61 | noComparaHits: HOXDb4
; GSTENG00018723001 |
5 |
p5 | --- | gapq | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000309439 | HOXB9 | q2 | q2 | 110 | 17 | 9576378 | 9576557 | 1 | 1 | 24% | 83.3% | 180 | 0.53 / 0.78 = 0.68 | noComparaHits: GSTENG00018723001
; HOXDb9 |
8 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 82 (region 10 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_3110 -i 2165:3853 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=1.14 log_scoreRatio_sum=0.13 focal_scoreRatio_sum=0.38
AlnScore=481 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000290295 | HOXB13 | q1 | q1 | 293 | scaffold_3110 | 2165 | 3814 | 1 | 2 | 93.3% | 56.4% | 861 | 0.58 / 0.51 = 1.14 | ortholog_one2many: NEWSINFRUG00000160125 | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 83 (region 9 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 12067392:12107179 -f 30e3 some_geneID_to_be_selected
scoreRatio_sum=1.02 log_scoreRatio_sum=0.02 focal_scoreRatio_sum=1.02
AlnScore=471 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000309439 | HOXB9 | q1 | q1 | 245 | 2 | 12067419 | 12068514 | -1 | 2 | 100% | 45.3% | 852 | 0.53 / 0.52 = 1.02 | between_species_paralog: hoxd9a | 2 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 84 (region 5 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 20045135:20048409 -f 25e2 some_geneID_to_be_selected
scoreRatio_sum=0.98 log_scoreRatio_sum=-0.01 focal_scoreRatio_sum=0.98
AlnScore=454 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000309439 | HOXB9 | q1 | q1 | 236.2 | Un_random | 20045138 | 20048409 | -1 | 2 | 98.8% | 51.5% | 741 | 0.53 / 0.54 = 0.98 | between_species_paralog: HXD9_CHICK | 3 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 85 (region 10 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 1379046:1406532 -f 21e3 some_geneID_to_be_selected
scoreRatio_sum=0.8 log_scoreRatio_sum=-0.21 focal_scoreRatio_sum=0.16
AlnScore=400 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000225648 | HOXB6 | q1 | q1 | 191.2 | 11 | 1379055 | 1380153 | -1 | 2 | 100% | 47.1% | 684 | 0.47 / 0.59 = 0.8 | between_species_paralog: hoxc6b | 4 |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 86 (region 4 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l Un -i 106218114:106219642 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.16
AlnScore=395 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000225648 | HOXB6 | q1 | q1 | 188.8 | Un | 106218114 | 106219603 | 1 | 2 | 97.8% | 48.1% | 672 | 0.47 / 0.6 = 0.78 | between_species_paralog: HOXC6 | 3 |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 87 (region 6 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 4242275:4245456 -f 24e2 some_geneID_to_be_selected
scoreRatio_sum=0.97 log_scoreRatio_sum=-0.02 focal_scoreRatio_sum=0.32
AlnScore=394 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000290295 | HOXB13 | q1 | q1 | 240 | Un_random | 4242275 | 4245456 | 1 | 2 | 66.9% | 57.6% | 603 | 0.58 / 0.6 = 0.97 | between_species_paralog: HOXC13 | 2 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 88 (region 11 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 37029826:37032291 -f 18e2 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.31
AlnScore=362 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000290295 | HOXB13 | q1 | q1 | 221 | 6 | 37029826 | 37032291 | -1 | 2 | 93.7% | 45.7% | 798 | 0.58 / 0.63 = 0.92 | between_species_paralog: hoxc13b | 5 |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 89 (region 8 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 80676474:80677664 -f 89e1 some_geneID_to_be_selected
scoreRatio_sum=0.77 log_scoreRatio_sum=-0.25 focal_scoreRatio_sum=0.1
AlnScore=345 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 291 | Un_random | 80676638 | 80677664 | -1 | 2 | 76.8% | 50.7% | 945 | 0.5 / 0.65 = 0.77 | between_species_paralog: GSTENG00003053001 | 4 |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 90 (region 7 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 376678:377022 -f 26e1 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.09
AlnScore=333 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 167 | Un_random | 376765 | 377022 | -1 | 1 | 34.3% | 90.7% | 258 | 0.43 / 0.66 = 0.65 | ortholog_one2one: HOXB4 | 2 |
p5 | --- | gape | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 91 (region 11 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_4108 -i 5954:6196 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.75 log_scoreRatio_sum=-0.28 focal_scoreRatio_sum=0.75
AlnScore=284 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000309439 | HOXB9 | q1 | q1 | 148 | scaffold_4108 | 5966 | 6196 | 1 | 1 | 30.8% | 89.6% | 231 | 0.53 / 0.71 = 0.75 | noComparaHits: NEWSINFRUG00000159744 | 5 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 92 (region 18 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4903 -i 10686:10931 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.61 log_scoreRatio_sum=-0.48 focal_scoreRatio_sum=0.09
AlnScore=283 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000328928 | HOXB4 | q1 | q1 | 142 | contig_4903 | 10689 | 10931 | -1 | 1 | 32.3% | 81.5% | 243 | 0.43 / 0.71 = 0.61 | noComparaHits: | 5 |
p5 | --- | gape | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 93 (region 5 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 1099214175475 -i 270:611 -f 26e1 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.74
AlnScore=278 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000309439 | HOXB9 | q1 | q1 | 145 | 1099214175475 | 342 | 563 | 1 | 1 | 29.6% | 89.2% | 222 | 0.53 / 0.72 = 0.74 | noComparaHits: | 4 |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 94 (region 8 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 13865410:13865646 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.64 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=0.13
AlnScore=266 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000225648 | HOXB6 | q1 | q1 | 127 | Un_random | 13865410 | 13865607 | 1 | 1 | 29.5% | 92.4% | 198 | 0.47 / 0.73 = 0.64 | noComparaHits: | 5 |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 95 (region 9 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 3 -i 679905:695510 -f 12e3 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.7
AlnScore=224 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000309439 | HOXB9 | q2 | q1 | 121 | 3 | 679926 | 680150 | -1 | 1 | 30% | 72% | 225 | 0.53 / 0.76 = 0.7 | noComparaHits: GSTENG00031864001 | 7 |
p11 | --- | gapq | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q2 | gape | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
region 96 (region 10 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 110113334:110113540 -f 16e1 some_geneID_to_be_selected
scoreRatio_sum=0.53 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.27
AlnScore=221 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000308252 | HOXB3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q1 | +/+ | ENSP00000239144 | HOXB8 | q1 | q1 | 114 | Un_random | 110113334 | 110113540 | 1 | 1 | 28.4% | 82.6% | 207 | 0.41 / 0.77 = 0.53 | noComparaHits: GSTENG00008821001 | 3 |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 97 (region 7 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 12 -i 17059616:17152280 -f 69e3 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.07
AlnScore=152 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 107 | 12 | 17151723 | 17152280 | 1 | 1 | 48% | 39.4% | 558 | 0.55 / 0.84 = 0.65 | noComparaHits: IPF1 | 5 |
p3 | --- | gape | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 98 (region 5 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 5 -i 147500120:147613697 -f 85e3 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.07
AlnScore=149 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 105 | 5 | 147584689 | 147585255 | 1 | 1 | 46.9% | 37.2% | 567 | 0.55 / 0.85 = 0.65 | noComparaHits: Ipf1 | 5 |
p3 | --- | gape | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 99 (region 5 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 25 -i 14692875:14841844 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.07
AlnScore=146 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 103 | 25 | 14729986 | 14730519 | -1 | 1 | 51.1% | 37.8% | 534 | 0.55 / 0.85 = 0.65 | noComparaHits: 493994 | 5 |
p3 | --- | gape | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 100 (region 9 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 180355088:180368165 -f 98e2 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.07
AlnScore=144 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000331741 | HOXB2 | q1 | q1 | 101 | 1 | 180367650 | 180368165 | -1 | 1 | 50.6% | 37.7% | 516 | 0.55 / 0.85 = 0.65 | noComparaHits: IPF1 | 7 |
p3 | --- | gape | ENSP00000308252 | HOXB3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 101 (region 5 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 27265651:27437291 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=128 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 108 | 13 | 27396221 | 27396682 | 1 | 1 | 31.1% | 43.5% | 462 | 0.5 / 0.87 = 0.57 | noComparaHits: IPF1 | 5 |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 102 (region 6 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 17 -i 7468448:7621326 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=125 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 106 | 17 | 7585833 | 7586192 | 1 | 1 | 26.5% | 50% | 360 | 0.5 / 0.87 = 0.57 | noComparaHits: IPF1 | 5 |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 103 (region 5 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 288288777:288480685 -f 14e4 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=122 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 103 | 4 | 288439997 | 288440419 | 1 | 1 | 31.6% | 44.4% | 423 | 0.5 / 0.87 = 0.57 | noComparaHits: IPF1 | 7 |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 104 (region 8 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 2 -i 17532338:17532628 -f 22e1 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 100 | 2 | 17532347 | 17532628 | -1 | 1 | 24.4% | 52.4% | 282 | 0.5 / 0.88 = 0.57 | noComparaHits: Q90ZR2_ORYLA | 10 |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 105 (region 11 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 6 -i 2710798:2711244 -f 34e1 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000355140 | HOXB1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000331741 | HOXB2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000308252 | HOXB3 | q1 | q1 | 100 | 6 | 2710798 | 2711220 | -1 | 1 | 31.8% | 42.1% | 423 | 0.5 / 0.88 = 0.57 | noComparaHits: GSTENG00023870001 | 9 |
p4 | --- | gape | ENSP00000328928 | HOXB4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000239151 | HOXB5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000225648 | HOXB6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000365889 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000239165 | HOXB7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000239144 | HOXB8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000309439 | HOXB9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000290294 | NP_115767.1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000290295 | HOXB13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000302547 | TTLL6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000365871 | Q658K6_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |