RNAz based prediction of ncRNAs in gammaproteobacterial genomes

Locus IDSeq. IDLocationCustom annotationWindow IDLocationStrandNLengthMean pairwise IDzSCIP
1Eco_1192,647 – 192,762-
-
"RNAmicro=f:192647_t:192762_strand:-_p:0.999950"
-
-
-
-
-
-
- 		1192,647 – 192,762+ 411683.19 -4.830.910.998347
2192,647 – 192,762- 411683.19 -4.820.920.998338
2Eco_1223,410 – 223,849-
-
-
"Rfam=AF084835.1/19-546_RF00177;SSU_rRNA_5;|2e-23"
-
-
-
-
-
- 		3223,410 – 223,530+ 312095.56 -1.840.960.797584
4223,410 – 223,530- 312095.56 -2.170.970.932946
5223,450 – 223,569+ 312098.33 -1.970.900.666081
6223,450 – 223,569- 312098.33 -1.730.930.622868
7223,490 – 223,609+ 312096.10 -3.410.880.946953
8223,530 – 223,649+ 312094.43 -4.640.930.968799
9223,530 – 223,649- 312094.43 -2.340.950.950808
10223,609 – 223,729+ 312095.56 -1.330.990.514807
11223,609 – 223,729- 312095.56 -1.550.960.625329
12223,649 – 223,769+ 312096.67 -3.300.970.991211
13223,649 – 223,769- 312096.67 -2.061.000.939129
14223,689 – 223,809+ 312096.67 -2.500.940.949658
15223,729 – 223,849+ 312098.89 -1.851.000.861554
3Eco_1223,849 – 224,225"known=rRNA.1:16S_ribosomal_RNA
:Eco_1:223771-225312"
-
-
"Rfam=AF227867.1/12-543_RF00177;SSU_rRNA_5;|0.0"
-
-
-
-
-
- 		16223,889 – 224,009+ 312098.89 -4.701.010.980484
17223,929 – 224,049+ 312097.22 -2.110.980.922924
18223,969 – 224,089+ 312097.78 -1.960.960.834425
19223,969 – 224,089- 312097.78 -1.860.960.794986
20224,009 – 224,129+ 312098.33 -2.970.960.981583
21224,009 – 224,129- 312098.33 -1.500.980.602251
22224,049 – 224,169+ 3120100.00 -3.380.950.976206
23224,049 – 224,169- 3120100.00 -1.731.000.806101
24224,105 – 224,225+ 3120100.00 -2.190.910.789479
25223,849 – 223,969+ 312084.44 -1.500.930.889591
26223,889 – 224,009+ 312080.83 -4.521.010.994246
27223,889 – 224,009- 312080.83 -1.920.850.946496
28223,929 – 224,049+ 312080.00 -1.900.940.994605
29223,969 – 224,089+ 312085.00 -1.450.910.793563
30223,969 – 224,089- 312085.00 -1.810.810.667101
31224,009 – 224,129+ 312093.61 -2.900.970.990734
32224,049 – 224,169+ 312096.11 -2.970.970.987273
4Eco_1224,302 – 224,542"known=rRNA.1:16S_ribosomal_RNA
:Eco_1:223771-225312"
-
-
"Rfam=X97595.1/20-506_RF00177;SSU_rRNA_5;|2e-31"
-
-
-
-
-
- 		33224,302 – 224,422+ 312088.06 -1.121.000.863446
34224,342 – 224,462+ 312084.72 -1.290.970.945273
35224,422 – 224,542+ 312088.89 -3.551.010.998023
36224,422 – 224,542- 312088.89 -1.751.000.963858
5Eco_1225,386 – 225,459"known=tRNA.1:tRNA-Ile
:Eco_1:225381-225457"
-
-
"Rfam=AP002567.1/65365-65438_RF00005;tRNA;|1e-32"
-
-
-
-
-
- 		37225,386 – 225,459- 47386.25 -1.820.830.839826
6Eco_1225,786 – 225,986"known=rRNA.2:23S_ribosomal_RNA
:Eco_1:225759-228662"
-
-
"Rfam=AJ294423.1/19-165_RF00002;5_8S_rRNA;|3e-11"
-
-
-
-
-
- 		38225,786 – 225,906+ 412092.50 -1.961.040.984654
39225,786 – 225,906- 412092.50 -1.350.950.631277
40225,826 – 225,946+ 412090.97 -3.451.070.999541
41225,826 – 225,946- 412090.97 -2.060.980.985750
42225,866 – 225,986+ 412092.64 -4.521.020.996602
43225,866 – 225,986- 412092.64 -1.811.080.977469
7Eco_1226,026 – 226,146"known=rRNA.2:23S_ribosomal_RNA
:Eco_1:225759-228662"
-
-
-
-
-
-
-
-
- 		44226,026 – 226,146+ 412092.22 -2.210.970.988814
8Eco_1226,344 – 226,824"known=rRNA.2:23S_ribosomal_RNA
:Eco_1:225759-228662"
-
"RNAmicro=f:226584_t:226703_strand:+_p:0.640825"
-
-
-
-
-
-
- 		45226,344 – 226,464+ 412096.94 -2.191.010.958866
46226,384 – 226,504+ 412097.78 -1.820.970.766672
47226,424 – 226,544+ 412099.58 -3.271.000.939461
48226,464 – 226,584+ 412099.58 -1.911.000.670074
49226,584 – 226,704- 412096.11 -1.580.980.730737
50226,704 – 226,824+ 412099.58 -1.780.980.533321
9Eco_1253,336 – 253,467-
-
"RNAmicro=f:253347_t:253466_strand:+_p:0.940575"
"Rfam=AL627279.1/105836-106061_RF00059;THI;|2e-11"
-
-
-
-
-
- 		51253,336 – 253,456+ 312084.44 -4.670.860.980710
52253,336 – 253,456- 312084.44 -2.430.770.894680
53253,347 – 253,467+ 312084.44 -5.210.860.960527
54253,347 – 253,467- 312084.44 -3.120.780.975158
10Eco_1437,374 – 437,498-
-
"RNAmicro=f:437378_t:437497_strand:+_p:0.999992"
"Rfam=AL627279.1/105836-106061_RF00059;THI;|4e-09"
-
-
-
-
-
- 		55437,374 – 437,494+ 312087.22 -3.040.950.993912
56437,374 – 437,494- 312087.22 -5.520.900.924385
57437,378 – 437,498+ 312085.56 -2.970.920.990499
58437,378 – 437,498- 312085.56 -5.570.870.929257
11Eco_1563,946 – 564,025"known=tRNA.6:tRNA-Arg
:Eco_1:563946-564022"
"tRNAscan=type:Arg:anticodon:TCT
f:563946_t:564018_strand=+_cove=59.48"
-
"Rfam=M31074.1/2197-2124_RF00005;tRNA;|1e-35"
-
-
-
-
-
- 		59563,946 – 564,025+ 57984.90 -2.081.040.995001
60563,946 – 564,025- 57984.90 -2.451.040.999091
12Eco_1596,201 – 596,329-
-
"RNAmicro=f:596209_t:596328_strand:+_p:0.978780"
"Rfam=AL627279.1/105836-106061_RF00059;THI;|3e-13"
-
-
-
-
-
- 		61596,201 – 596,321+ 312086.39 -2.860.940.992685
62596,201 – 596,321- 312086.39 -4.930.920.966853
63596,209 – 596,329+ 312086.94 -1.800.940.929807
64596,209 – 596,329- 312086.94 -4.430.920.983253
13Eco_1695,607 – 695,732"known=tRNA.7:tRNA-Gln
:Eco_1:695653-695727"
-
-
"Rfam=AJ414153.1/33103-33032_RF00005;tRNA;|6e-30"
-
-
-
-
-
- 		65695,607 – 695,727+ 312097.78 -4.091.000.991512
66695,607 – 695,727- 312097.78 -4.471.000.986771
67695,612 – 695,732+ 312097.22 -3.580.990.994020
68695,612 – 695,732- 312097.22 -5.080.990.964216
14Eco_1695,765 – 695,847"known=tRNA.8:tRNA-Gln
:Eco_1:695765-695839"
"tRNAscan=type:Gln:anticodon:CTG
f:695767_t:695840_strand=-_cove=56.82"
-
"Rfam=AJ414153.1/33103-33032_RF00005;tRNA;|3e-30"
-
-
-
-
-
- 		69695,765 – 695,847+ 48287.06 -2.581.030.998564
70695,765 – 695,847- 48287.06 -4.040.960.998984
15Eco_1695,884 – 695,965"known=tRNA.9:tRNA-Met
:Eco_1:695887-695963"
"tRNAscan=type:Met:anticodon:CAT
f:695889_t:695967_strand=-_cove=80.41"
-
"Rfam=AL627267.1/195304-195231_RF00005;tRNA;|4e-36"
-
-
-
-
-
- 		71695,884 – 695,965+ 38192.59 -2.621.070.998217
72695,884 – 695,965- 38192.59 -2.270.960.960254
16Eco_1695,977 – 696,056"known=tRNA.10:tRNA-Gln
:Eco_1:695979-696053"
"tRNAscan=type:Gln:anticodon:TTG
f:695981_t:696056_strand=-_cove=54.87"
-
"Rfam=AE005245.1/5142-5071_RF00005;tRNA;|5e-35"
-
-
-
-
-
- 		73695,977 – 696,056+ 47986.68 -2.531.060.998785
74695,977 – 696,056- 47986.68 -3.330.970.999143
17Eco_1696,085 – 696,167"known=tRNA.11:tRNA-Gln
:Eco_1:696088-696162"
"tRNAscan=type:Gln:anticodon:TTG
f:696090_t:696166_strand=-_cove=54.87"
-
"Rfam=AE005245.1/5142-5071_RF00005;tRNA;|6e-35"
-
-
-
-
-
- 		75696,085 – 696,167+ 48284.16 -2.651.000.998025
76696,085 – 696,167- 48284.16 -3.330.930.998916
18Eco_1779,984 – 780,142"known=tRNA.15:tRNA-Val
:Eco_1:779988-780063"
"tRNAscan=type:Val:anticodon:TAC
f:779987_t:780062_strand=+_cove=68.73"
-
"Rfam=X70450.1/1-73_RF00005;tRNA;|7e-27"
-
-
-
-
-
- 		77779,984 – 780,102+ 312096.66 -1.401.000.592584
78779,984 – 780,102- 312096.66 -1.611.000.750010
79780,024 – 780,142+ 312098.89 -2.631.000.979717
80780,024 – 780,142- 312098.89 -2.100.990.921180
81780,065 – 780,142+ 47793.93 -3.241.030.998711
82780,065 – 780,142- 47793.93 -2.941.050.998550
19Eco_1780,275 – 780,446"known=tRNA.17:tRNA-Val
:Eco_1:780291-780366"
"tRNAscan=type:Val:anticodon:TAC
f:780290_t:780377_strand=+_cove=68.73"
-
"Rfam=X70450.1/1-73_RF00005;tRNA;|8e-27"
-
-
-
-
-
- 		83780,275 – 780,395- 312098.33 -1.730.980.754909
84780,315 – 780,435+ 312099.44 -1.510.970.586103
85780,326 – 780,446+ 312099.44 -2.521.000.972081
86780,326 – 780,446- 312099.44 -1.790.990.811893
87780,370 – 780,446+ 57695.79 -3.361.030.999995
88780,370 – 780,446- 57695.79 -2.921.040.999993
20Eco_1780,592 – 780,674"known=tRNA.19:tRNA-Lys
:Eco_1:780592-780667"
"tRNAscan=type:Lys:anticodon:TTT
f:780592_t:780663_strand=+_cove=76.57"
-
"Rfam=AE016778.1/198055-198127_RF00005;tRNA;|2e-25"
-
-
-
-
-
- 		89780,592 – 780,674+ 58292.32 -3.191.030.999998
90780,592 – 780,674- 58292.32 -2.821.040.999996
21Eco_1780,800 – 780,885"known=tRNA.20:tRNA-Lys
:Eco_1:780800-780875"
"tRNAscan=type:Lys:anticodon:TTT
f:780800_t:780871_strand=+_cove=76.57"
-
"Rfam=AE016778.1/198055-198127_RF00005;tRNA;|2e-25"
-
-
-
-
-
- 		91780,800 – 780,885+ 48594.71 -3.411.040.998237
92780,800 – 780,885- 48594.71 -2.801.040.997454
22Eco_1802,544 – 802,673-
-
"RNAmicro=f:802553_t:802672_strand:+_p:0.999990"
"Rfam=AL627279.1/105836-106061_RF00059;THI;|3e-13"
-
-
-
-
-
- 		93802,544 – 802,664+ 312084.44 -2.960.940.995665
94802,544 – 802,664- 312084.44 -5.170.920.961977
95802,553 – 802,673+ 312086.94 -2.280.940.977884
96802,553 – 802,673- 312086.94 -4.930.920.964861
23Eco_11,096,781 – 1,096,901"known=tRNA.23:tRNA-Ser
:Eco_1:1096788-1096875"
"tRNAscan=type:Ser:anticodon:GGA
f:1096790_t:1096883_strand=-_cove=53.14"
-
"Rfam=AE004253.1/4495-4579_RF00005;tRNA;|1e-27"
-
-
-
-
-
- 		971,096,781 – 1,096,901- 312097.22 -1.560.960.587771
24Eco_11,286,584 – 1,286,856"known=tRNA.25:tRNA-Tyr
:Eco_1:1286761-1286845"
-
-
"Rfam=K01197.1/649-818_RF00391;RtT;|2e-81"
"Noncode=n458,u428,AE008778,rtT,Salmonella_typhimurium_LT2|3e-35"
-
-
-
-
"ncRNAdb=Ecoli_RtT-9-U00096|4e-92" 		981,286,802 – 1,286,856+ 354100.00 -2.371.000.960955
991,286,584 – 1,286,704- 312089.17 -2.500.890.940208
25Eco_11,286,760 – 1,286,848"known=tRNA.25:tRNA-Tyr
:Eco_1:1286761-1286845"
"tRNAscan=type:Tyr:anticodon:GTA
f:1286763_t:1287023_strand=-_cove=46.86"
-
"Rfam=X57091.1/249-330_RF00005;tRNA;|4e-36"
-
-
-
-
-
"ncRNAdb=Sente_RtT-9-AE016839|6e-33" 		1001,286,760 – 1,286,848+ 68890.59 -2.360.910.994588
1011,286,760 – 1,286,848- 68890.59 -2.080.940.996333
26Eco_11,407,147 – 1,407,267-
-
-
-
-
-
-
-
-
- 		1021,407,147 – 1,407,267- 312097.78 -1.461.010.649230
27Eco_11,744,539 – 1,744,617"known=tRNA.27:tRNA-Val
:Eco_1:1744540-1744616"
"tRNAscan=type:Val:anticodon:GAC
f:1744539_t:1744612_strand=+_cove=76.53"
-
"Rfam=AE016838.1/154594-154521_RF00005;tRNA;|1e-26"
-
-
-
-
-
- 		1031,744,539 – 1,744,617+ 37880.34 -2.180.890.989947
1041,744,539 – 1,744,617- 37880.34 -2.460.910.996830
28Eco_11,860,640 – 1,860,760-
-
-
-
-
-
-
-
-
- 		1051,860,640 – 1,860,760+ 312094.44 -1.730.920.622054
29Eco_11,913,559 – 1,913,655-
-
-
-
-
-
-
-
-
- 		1061,913,559 – 1,913,655+ 49792.40 -3.370.880.990625
1071,913,559 – 1,913,655- 49792.40 -2.560.840.956350
30Eco_11,921,127 – 1,921,221"known=misc_RNA.18:unknown_RNA
:Eco_1:1921090-1921338"
-
-
"Rfam=AE008783.1/12435-12690_RF00101;SraC_RyeA;|8e-44"
-
-
-
-
-
"ncRNAdb=Ecoli_SraC-7-U00096|3e-47" 		1081,921,127 – 1,921,221+ 39595.77 -3.650.900.972924
1091,921,127 – 1,921,221- 39595.77 -3.600.880.959547
31Eco_11,990,066 – 1,990,144"known=tRNA.30:tRNA-Gly
:Eco_1:1990066-1990141"
"tRNAscan=type:Gly:anticodon:GCC
f:1990068_t:1990142_strand=-_cove=71.11"
-
"Rfam=AE008904.1/10704-10776_RF00005;tRNA;|1e-35"
-
-
-
-
-
- 		1101,990,066 – 1,990,144+ 67896.40 -2.221.010.999965
1111,990,066 – 1,990,144- 67896.40 -2.371.000.999967
32Eco_12,042,549 – 2,042,650"known=tRNA.32:tRNA-Asn
:Eco_1:2042573-2042648"
"tRNAscan=type:Asn:anticodon:GTT
f:2042572_t:2042667_strand=+_cove=80.09"
-
"Rfam=AJ414149.1/59646-59574_RF00005;tRNA;|2e-35"
-
-
-
-
-
- 		1122,042,549 – 2,042,650- 510186.10 -1.430.940.689023
33Eco_12,056,034 – 2,056,157"known=tRNA.33:tRNA-Asn
:Eco_1:2056051-2056126"
"tRNAscan=type:Asn:anticodon:GTT
f:2056053_t:2056144_strand=-_cove=80.09"
-
"Rfam=AJ414149.1/59646-59574_RF00005;tRNA;|2e-35"
-
-
-
-
-
- 		1132,056,034 – 2,056,154+ 412090.97 -1.630.900.824716
1142,056,037 – 2,056,157+ 412090.97 -1.530.930.788032
34Eco_12,057,871 – 2,057,954"known=tRNA.34:tRNA-Asn
:Eco_1:2057875-2057950"
"tRNAscan=type:Asn:anticodon:GTT
f:2057874_t:2057949_strand=+_cove=80.09"
-
"Rfam=AJ414149.1/59646-59574_RF00005;tRNA;|1e-35"
-
-
-
-
-
- 		1152,057,871 – 2,057,954+ 58393.24 -2.121.000.999847
1162,057,871 – 2,057,954- 58393.24 -2.841.000.999993
35Eco_12,403,135 – 2,403,312-
-
"RNAmicro=f:2403135_t:2403254_strand:+_p:0.948898"
-
-
-
-
-
-
- 		1172,403,135 – 2,403,255+ 312094.17 -2.120.900.811831
1182,403,135 – 2,403,255- 312094.17 -2.060.940.871983
1192,403,175 – 2,403,295+ 312091.39 -2.260.940.948726
1202,403,175 – 2,403,295- 312091.39 -1.980.890.751671
1212,403,192 – 2,403,312+ 312091.67 -1.790.870.580084
36Eco_12,428,786 – 2,428,941-
-
-
-
-
-
-
-
-
- 		1222,428,786 – 2,428,906+ 312096.11 -1.690.960.702925
1232,428,821 – 2,428,941+ 312084.44 -2.810.880.983270
1242,428,821 – 2,428,941- 312084.44 -3.060.870.988098
37Eco_12,516,060 – 2,516,140"known=tRNA.38:tRNA-Ala
:Eco_1:2516063-2516138"
"tRNAscan=type:Ala:anticodon:GGC
f:2516065_t:2516142_strand=-_cove=66.32"
-
"Rfam=AE016835.1/214862-214934_RF00005;tRNA;|1e-35"
-
-
-
-
-
- 		1252,516,060 – 2,516,140+ 68090.14 -1.730.960.990880
1262,516,060 – 2,516,140- 68090.14 -1.521.040.997396
38Eco_12,518,953 – 2,519,029"known=tRNA.40:tRNA-Val
:Eco_1:2518953-2519028"
"tRNAscan=type:Val:anticodon:TAC
f:2518953_t:2519024_strand=+_cove=57.51"
-
"Rfam=X70450.1/1-73_RF00005;tRNA;|1e-26"
-
-
-
-
-
- 		1272,518,953 – 2,519,029+ 47693.42 -2.970.970.997443
1282,518,953 – 2,519,029- 47693.42 -2.161.030.990979
39Eco_12,519,073 – 2,519,151"known=tRNA.41:tRNA-Val
:Eco_1:2519073-2519148"
"tRNAscan=type:Val:anticodon:TAC
f:2519073_t:2519144_strand=+_cove=57.51"
-
"Rfam=X70450.1/1-73_RF00005;tRNA;|1e-26"
-
-
-
-
-
- 		1292,519,073 – 2,519,151+ 57887.56 -2.610.910.999137
1302,519,073 – 2,519,151- 57887.56 -1.760.920.954146
40Eco_12,519,195 – 2,519,357"known=tRNA.43:tRNA-Lys
:Eco_1:2519275-2519350"
"tRNAscan=type:Val:anticodon:TAC
f:2519195_t:2519266_strand=+_cove=57.51"
-
"Rfam=X70450.1/1-73_RF00005;tRNA;|3e-26"
-
-
-
-
-
- 		1312,519,195 – 2,519,315+ 312099.44 -1.331.000.532152
1322,519,233 – 2,519,353+ 312099.44 -2.481.000.971961
1332,519,233 – 2,519,353- 312099.44 -2.141.000.934936
1342,519,275 – 2,519,357+ 58291.54 -3.201.030.999997
1352,519,275 – 2,519,357- 58291.54 -2.821.040.999995
41Eco_12,541,670 – 2,541,795-
-
"RNAmicro=f:2541675_t:2541794_strand:+_p:0.999993"
-
-
-
-
-
-
- 		1362,541,670 – 2,541,790+ 412080.17 -4.470.870.999661
1372,541,670 – 2,541,790- 412080.17 -5.410.950.996678
1382,541,675 – 2,541,795+ 412082.68 -4.740.910.998724
1392,541,675 – 2,541,795- 412082.68 -4.980.980.997534
42Eco_12,724,574 – 2,724,694"known=rRNA.5:23S_ribosomal_RNA
:Eco_1:2724303-2727206"
-
-
-
-
-
-
-
-
- 		1402,724,574 – 2,724,694- 412098.75 -1.861.000.735061
43Eco_12,724,774 – 2,724,986"known=rRNA.5:23S_ribosomal_RNA
:Eco_1:2724303-2727206"
-
-
-
-
-
-
-
-
- 		1412,724,774 – 2,724,894- 412092.22 -2.600.980.996926
1422,724,814 – 2,724,934- 412090.42 -2.491.050.998469
1432,724,854 – 2,724,974- 412094.17 -1.621.030.896051
1442,724,866 – 2,724,986- 412094.17 -1.400.900.523606
44Eco_12,726,403 – 2,726,681"known=rRNA.5:23S_ribosomal_RNA
:Eco_1:2724303-2727206"
-
-
-
-
-
-
-
-
- 		1452,726,403 – 2,726,523- 312092.50 -3.441.010.997669
1462,726,523 – 2,726,643- 312086.94 -2.061.050.998520
1472,726,563 – 2,726,681- 312086.94 -1.870.890.837800
45Eco_12,727,391 – 2,727,469"known=tRNA.44:tRNA-Glu
:Eco_1:2727391-2727466"
"tRNAscan=type:Glu:anticodon:TTC
f:2727393_t:2727467_strand=-_cove=56.72"
-
"Rfam=U55299.1/85-158_RF00005;tRNA;|3e-33"
-
-
-
-
-
- 		1482,727,391 – 2,727,469+ 67893.14 -1.801.010.999616
1492,727,391 – 2,727,469- 67893.14 -2.950.960.999962
46Eco_12,727,636 – 2,727,796"known=rRNA.6:16S_ribosomal_RNA
:Eco_1:2727638-2729179"
-
-
"Rfam=Z93981.1/19-411_RF00177;SSU_rRNA_5;|4e-16"
-
-
-
-
-
- 		1502,727,636 – 2,727,756- 512096.67 -2.580.970.999921
1512,727,676 – 2,727,796- 512096.67 -1.321.030.942716
47Eco_12,727,836 – 2,728,195"known=rRNA.6:16S_ribosomal_RNA
:Eco_1:2727638-2729179"
-
-
"Rfam=Z93956.1/19-543_RF00177;SSU_rRNA_5;|4e-30"
-
-
-
-
-
- 		1522,727,836 – 2,727,956- 512092.25 -1.391.000.969299
1532,727,876 – 2,727,996- 512091.25 -2.221.010.999891
1542,727,916 – 2,728,036- 512094.67 -2.080.970.999653
1552,727,956 – 2,728,075- 512093.47 -1.450.970.974219
1562,728,075 – 2,728,195- 512091.42 -1.341.020.954037
48Eco_12,728,201 – 2,728,321"known=rRNA.6:16S_ribosomal_RNA
:Eco_1:2727638-2729179"
-
-
"Rfam=AY471685.1/800-1364_RF00177;SSU_rRNA_5;|9e-38"
-
-
-
-
-
- 		1572,728,201 – 2,728,321- 512098.67 -1.710.980.981670
49Eco_12,728,780 – 2,729,060"known=rRNA.6:16S_ribosomal_RNA
:Eco_1:2727638-2729179"
-
-
"Rfam=AF227867.1/12-543_RF00177;SSU_rRNA_5;|1e-146"
-
-
-
-
-
- 		1582,728,780 – 2,728,900- 312096.67 -2.661.020.991840
1592,728,820 – 2,728,940- 312093.89 -2.631.020.993760
1602,728,860 – 2,728,980+ 312086.67 -2.020.840.759518
1612,728,860 – 2,728,980- 312086.67 -1.940.940.943196
1622,728,900 – 2,729,020- 312081.39 -1.810.900.964912
1632,728,940 – 2,729,060+ 312082.78 -1.710.760.638268
1642,728,940 – 2,729,060- 312082.78 -4.971.030.979440
50Eco_12,735,669 – 2,735,767-
-
-
-
-
-
-
-
-
- 		1652,735,669 – 2,735,767+ 39992.57 -2.990.880.956116
1662,735,669 – 2,735,767- 39992.57 -2.790.910.964473
51Eco_12,816,078 – 2,816,159"known=tRNA.47:tRNA-Arg
:Eco_1:2816081-2816157"
"tRNAscan=type:Arg:anticodon:ACG
f:2816083_t:2816161_strand=-_cove=80.27"
-
"Rfam=U32747.1/5480-5407_RF00005;tRNA;|5e-26"
-
-
-
-
-
- 		1672,816,078 – 2,816,159+ 59883.32 -2.690.970.998350
1682,816,078 – 2,816,159- 59883.32 -1.481.040.865735
52Eco_12,816,219 – 2,816,299"known=tRNA.48:tRNA-Arg
:Eco_1:2816220-2816296"
"tRNAscan=type:Arg:anticodon:ACG
f:2816222_t:2816298_strand=-_cove=80.27"
-
"Rfam=U32747.1/5480-5407_RF00005;tRNA;|5e-26"
-
-
-
-
-
- 		1692,816,219 – 2,816,299+ 48093.33 -3.101.010.998689
1702,816,219 – 2,816,299- 48093.33 -2.111.060.991045
53Eco_12,816,494 – 2,816,679"known=tRNA.49:tRNA-Arg
:Eco_1:2816495-2816571"
"tRNAscan=type:Arg:anticodon:ACG
f:2816497_t:2816573_strand=-_cove=80.27"
-
"Rfam=K01556.1/1-90_RF00005;tRNA;|3e-45"
-
-
-
-
-
- 		1712,816,494 – 2,816,609+ 412093.19 -2.600.880.976868
1722,816,494 – 2,816,609- 412093.19 -2.960.930.995544
1732,816,564 – 2,816,679- 412093.62 -2.540.920.986465
54Eco_12,817,209 – 2,817,329-
-
-
-
-
-
-
-
-
- 		1742,817,209 – 2,817,329+ 312096.67 -2.720.900.930609
1752,817,209 – 2,817,329- 312096.67 -1.580.930.522778
55Eco_12,940,691 – 2,940,916"known=misc_RNA.32:regulatory_sRNA
:Eco_1:2940718-2940922"
-
-
"Rfam=U00096.2/2940718-2940830_RF00022;GcvB;|6e-59"
"Noncode=n3836,u3416,AP002563,gcvB,Escherichia_coli_O157:H7|9e-60"
-
-
-
-
"ncRNAdb=Ecoli_GcvB-2-U00096|4e-58" 		1762,940,691 – 2,940,811+ 312097.78 -2.441.020.983309
1772,940,731 – 2,940,851+ 312095.00 -1.361.030.697445
1782,940,731 – 2,940,851- 312095.00 -2.440.920.926981
1792,940,771 – 2,940,891- 312097.22 -3.021.000.993266
1802,940,796 – 2,940,916+ 312096.11 -2.440.980.974133
1812,940,796 – 2,940,916- 312096.11 -4.561.000.988957
56Eco_12,945,517 – 2,945,598"known=tRNA.52:tRNA-Met
:Eco_1:2945519-2945595"
"tRNAscan=type:Met:anticodon:CAT
f:2945518_t:2945592_strand=+_cove=63.66"
-
"Rfam=M21680.1/49-122_RF00005;tRNA;|9e-34"
-
-
-
-
-
- 		1822,945,517 – 2,945,598+ 68196.05 -1.291.000.993220
57Eco_12,945,627 – 2,945,708"known=tRNA.53:tRNA-Met
:Eco_1:2945629-2945705"
"tRNAscan=type:Met:anticodon:CAT
f:2945628_t:2945702_strand=+_cove=63.66"
-
"Rfam=M21680.1/49-122_RF00005;tRNA;|9e-34"
-
-
-
-
-
- 		1832,945,627 – 2,945,708+ 68295.33 -1.261.000.991681
58Eco_12,997,005 – 2,997,125"known=tRNA.54:tRNA-Gly
:Eco_1:2997006-2997079"
"tRNAscan=type:Gly:anticodon:CCC
f:2997008_t:2997081_strand=-_cove=66.40"
-
"Rfam=K00197.1/1-71_RF00005;tRNA;|4e-34"
-
-
-
-
-
- 		1842,997,005 – 2,997,125+ 312093.31 -4.220.990.993898
1852,997,005 – 2,997,125- 312093.31 -5.050.980.974255
59Eco_13,054,044 – 3,054,204"known=misc_RNA.35:6S_regulatory_RNA
:Eco_1:3054005-3054187"
-
-
"Rfam=BX950851.1/526655-526838_RF00013;6S;|3e-38"
"Noncode=n5345,u4032,X01238,ssrS,Escherichia_coli|2e-78"
-
-
-
-
"ncRNAdb=Ecoli_6S-4-X01238|3e-76" 		1863,054,044 – 3,054,164+ 312098.89 -2.821.000.987959
1873,054,044 – 3,054,164- 312098.89 -1.630.960.634134
1883,054,084 – 3,054,204+ 312095.00 -1.690.930.633879
1893,054,084 – 3,054,204- 312095.00 -1.510.990.690065
60Eco_13,069,291 – 3,069,419-
-
"RNAmicro=f:3069299_t:3069418_strand:+_p:0.999980"
"Rfam=AL627279.1/105836-106061_RF00059;THI;|3e-13"
-
-
-
-
-
- 		1903,069,291 – 3,069,411+ 312086.39 -3.220.910.989701
1913,069,291 – 3,069,411- 312086.39 -4.990.900.960415
1923,069,299 – 3,069,419+ 312086.39 -2.040.910.925388
1933,069,299 – 3,069,419- 312086.39 -4.360.900.982923
61Eco_13,108,349 – 3,108,464"known=tRNA.55:tRNA-Phe
:Eco_1:3108388-3108463"
"tRNAscan=type:Phe:anticodon:GAA
f:3108387_t:3108497_strand=+_cove=75.98"
-
"Rfam=AJ414142.1/60831-60759_RF00005;tRNA;|2e-35"
-
-
-
-
-
- 		1943,108,349 – 3,108,464+ 311596.52 -2.140.960.906141
1953,108,349 – 3,108,464- 311596.52 -3.650.950.987023
62Eco_13,213,590 – 3,213,710"known=tRNA.56:tRNA-Ile
:Eco_1:3213620-3213695"
"tRNAscan=type:Met:anticodon:CAT
f:3213619_t:3213720_strand=+_cove=86.32"
-
"Rfam=U00096.2/3213620-3213692_RF00005;tRNA;|2e-35"
-
-
-
-
-
- 		1963,213,590 – 3,213,710+ 312086.67 -2.380.900.954403
1973,213,590 – 3,213,710- 312086.67 -1.900.990.985919
63Eco_13,305,942 – 3,306,062-
-
-
-
-
-
-
-
-
- 		1983,305,942 – 3,306,062- 312096.67 -2.280.930.904044
64Eco_13,309,260 – 3,309,437"known=misc_RNA.40:unknown_RNA
:Eco_1:3309247-3309420"
-
-
"Rfam=AP002564.1/142425-142596_RF00082;SraG;|4e-87"
-
-
-
-
-
"ncRNAdb=Sflex_SraG-8-AE016989|2e-86" 		1993,309,260 – 3,309,380- 312096.11 -2.320.980.964612
2003,309,300 – 3,309,419- 312095.54 -2.310.930.918401
2013,309,318 – 3,309,437+ 312094.99 -1.880.920.711780
2023,309,318 – 3,309,437- 312094.99 -4.120.960.988095
65Eco_13,316,235 – 3,316,316"known=tRNA.57:tRNA-Met
:Eco_1:3316235-3316311"
"tRNAscan=type:Met:anticodon:CAT
f:3316237_t:3316312_strand=-_cove=61.77"
-
"Rfam=M21680.1/49-122_RF00005;tRNA;|4e-36"
-
-
-
-
-
- 		2033,316,235 – 3,316,316- 58197.28 -1.090.960.500000
66Eco_13,320,058 – 3,320,190"known=tRNA.58:tRNA-Leu
:Eco_1:3320094-3320180"
"tRNAscan=type:Leu:anticodon:GAG
f:3320096_t:3320217_strand=-_cove=52.27"
-
"Rfam=BX950851.1/773027-773110_RF00005;tRNA;|1e-34"
-
-
-
-
-
- 		2043,320,058 – 3,320,177+ 312096.66 -4.890.990.974978
2053,320,058 – 3,320,177- 312096.66 -4.431.010.990567
2063,320,071 – 3,320,190+ 312097.21 -1.610.950.591250
2073,320,071 – 3,320,190- 312097.21 -2.090.970.902366
67Eco_13,376,733 – 3,376,850-
-
-
-
-
-
-
-
-
- 		2083,376,733 – 3,376,850- 312091.60 -1.960.810.500000
68Eco_13,421,403 – 3,421,516-
-
-
"Rfam=AE016770.1/210438-210553_RF00001;5S_rRNA;|2e-32"
-
-
-
-
-
- 		2093,421,403 – 3,421,516+ 412085.94 -2.120.710.854511
2103,421,403 – 3,421,516- 412085.94 -2.960.720.975953
69Eco_13,421,600 – 3,421,680"known=tRNA.59:tRNA-Thr
:Eco_1:3421602-3421677"
"tRNAscan=type:Thr:anticodon:GGT
f:3421604_t:3421680_strand=-_cove=79.16"
-
"Rfam=AE016801.1/279765-279837_RF00005;tRNA;|5e-26"
-
-
-
-
-
- 		2113,421,600 – 3,421,680+ 48095.00 -4.701.020.987652
2123,421,600 – 3,421,680- 48095.00 -3.821.020.996944
70Eco_13,422,173 – 3,422,293"known=rRNA.9:23S_ribosomal_RNA
:Eco_1:3421902-3424805"
-
-
-
-
-
-
-
-
- 		2133,422,173 – 3,422,293- 412097.50 -1.920.960.826453
71Eco_13,422,373 – 3,422,585"known=rRNA.9:23S_ribosomal_RNA
:Eco_1:3421902-3424805"
-
-
-
-
-
-
-
-
- 		2143,422,373 – 3,422,493- 412092.22 -2.600.980.996926
2153,422,413 – 3,422,533- 412090.42 -2.491.050.998469
2163,422,453 – 3,422,573- 412094.17 -1.621.030.896051
2173,422,465 – 3,422,585- 412094.17 -1.400.900.523606
72Eco_13,424,002 – 3,424,280"known=rRNA.9:23S_ribosomal_RNA
:Eco_1:3421902-3424805"
-
-
-
-
-
-
-
-
- 		2183,424,002 – 3,424,122- 312092.50 -3.441.010.997669
2193,424,122 – 3,424,242- 312086.94 -2.061.050.998520
2203,424,162 – 3,424,280- 312086.94 -1.870.890.837800
73Eco_13,424,979 – 3,425,059"known=tRNA.60:tRNA-Ala
:Eco_1:3424980-3425055"
"tRNAscan=type:Ala:anticodon:TGC
f:3424982_t:3425057_strand=-_cove=70.60"
-
"Rfam=AF373161.1/192-264_RF00005;tRNA;|8e-31"
-
-
-
-
-
- 		2213,424,979 – 3,425,059+ 68086.00 -1.590.870.677572
74Eco_13,425,097 – 3,425,170"known=tRNA.61:tRNA-Ile
:Eco_1:3425098-3425174"
"tRNAscan=type:Ile:anticodon:GAT
f:3425100_t:3425172_strand=-_cove=48.28"
-
"Rfam=AP002567.1/65365-65438_RF00005;tRNA;|8e-34"
-
-
-
-
-
- 		2223,425,097 – 3,425,170+ 57388.07 -1.680.830.817983
75Eco_13,425,241 – 3,425,401"known=rRNA.10:16S_ribosomal_RNA
:Eco_1:3425243-3426784"
-
-
"Rfam=Z93981.1/19-411_RF00177;SSU_rRNA_5;|4e-16"
-
-
-
-
-
- 		2233,425,241 – 3,425,361- 512096.67 -2.580.970.999921
2243,425,281 – 3,425,401- 512096.67 -1.321.030.942716
76Eco_13,425,441 – 3,425,800"known=rRNA.10:16S_ribosomal_RNA
:Eco_1:3425243-3426784"
-
-
"Rfam=Z93956.1/19-543_RF00177;SSU_rRNA_5;|4e-30"
-
-
-
-
-
- 		2253,425,441 – 3,425,561- 512092.25 -1.391.000.969299
2263,425,481 – 3,425,601- 512091.25 -2.221.010.999891
2273,425,521 – 3,425,641- 512094.67 -2.080.970.999653
2283,425,561 – 3,425,680- 512093.47 -1.450.970.974219
2293,425,680 – 3,425,800- 512091.42 -1.341.020.954037
77Eco_13,425,806 – 3,425,926"known=rRNA.10:16S_ribosomal_RNA
:Eco_1:3425243-3426784"
-
-
"Rfam=AY471685.1/800-1364_RF00177;SSU_rRNA_5;|9e-38"
-
-
-
-
-
- 		2303,425,806 – 3,425,926- 512098.67 -1.710.980.981670
78Eco_13,426,385 – 3,426,705"known=rRNA.10:16S_ribosomal_RNA
:Eco_1:3425243-3426784"
-
-
"Rfam=AF227867.1/12-543_RF00177;SSU_rRNA_5;|6e-168"
-
-
-
-
-
- 		2313,426,385 – 3,426,505- 312096.67 -2.661.020.991840
2323,426,425 – 3,426,545- 312093.89 -2.671.020.994367
2333,426,465 – 3,426,585+ 312086.39 -2.050.840.793593
2343,426,465 – 3,426,585- 312086.39 -1.750.940.917046
2353,426,505 – 3,426,625- 312081.11 -1.660.900.946274
2363,426,545 – 3,426,665+ 312082.78 -1.710.770.647085
2373,426,545 – 3,426,665- 312082.78 -4.941.010.980468
2383,426,585 – 3,426,705- 312088.06 -1.140.940.550710
79Eco_13,451,293 – 3,451,477-
-
-
-
-
-
-
-
-
- 		2393,451,293 – 3,451,413- 312098.33 -1.801.000.840367
2403,451,333 – 3,451,453+ 312094.44 -2.020.970.913444
2413,451,333 – 3,451,453- 312094.44 -2.160.990.958020
2423,451,357 – 3,451,477+ 312094.44 -1.570.960.642766
2433,451,357 – 3,451,477- 312094.44 -2.280.980.966998
80Eco_13,809,738 – 3,809,856-
-
-
-
-
-
-
-
-
- 		2443,809,738 – 3,809,856+ 312097.21 -2.460.960.953661
2453,809,738 – 3,809,856- 312097.21 -2.771.010.991172
81Eco_13,939,685 – 3,940,285"known=rRNA.11:16S_ribosomal_RNA
:Eco_1:3939831-3941372"
-
-
"Rfam=AF227867.1/12-543_RF00177;SSU_rRNA_5;|0.0"
-
-
-
-
-
- 		2463,939,685 – 3,939,805+ 312098.33 -2.391.000.969714
2473,939,685 – 3,939,805- 312098.33 -1.801.000.845854
2483,939,725 – 3,939,845+ 312097.78 -2.861.000.989904
2493,939,765 – 3,939,885+ 312099.44 -2.200.980.926488
2503,939,805 – 3,939,925+ 312098.33 -2.251.010.963107
2513,939,885 – 3,940,005+ 312098.33 -1.601.020.777989
2523,939,925 – 3,940,045+ 312099.44 -1.571.010.723224
2533,939,965 – 3,940,085+ 312097.78 -3.321.010.994689
2543,940,005 – 3,940,125+ 312097.22 -2.730.980.982911
2553,940,085 – 3,940,205+ 312098.89 -2.250.940.886151
2563,940,165 – 3,940,285+ 3120100.00 -2.190.910.789479
2573,939,909 – 3,940,029+ 312082.78 -1.480.920.927722
2583,939,949 – 3,940,069+ 312080.28 -4.681.020.992343
2593,939,949 – 3,940,069- 312080.28 -2.190.820.973597
2603,939,989 – 3,940,109+ 312079.44 -1.830.900.987436
2613,940,029 – 3,940,149+ 312084.44 -1.600.890.796809
2623,940,029 – 3,940,149- 312084.44 -1.890.800.726383
2633,940,069 – 3,940,189+ 312093.61 -2.900.970.990734
2643,940,109 – 3,940,229+ 312096.11 -2.970.970.987273
82Eco_13,940,362 – 3,940,602"known=rRNA.11:16S_ribosomal_RNA
:Eco_1:3939831-3941372"
-
-
"Rfam=X97595.1/20-506_RF00177;SSU_rRNA_5;|2e-31"
-
-
-
-
-
- 		2653,940,362 – 3,940,482+ 312088.06 -1.121.000.863446
2663,940,402 – 3,940,522+ 312084.72 -1.290.970.945273
2673,940,482 – 3,940,602+ 312088.89 -3.551.010.998023
2683,940,482 – 3,940,602- 312088.89 -1.751.000.963858
83Eco_13,941,754 – 3,941,954"known=rRNA.12:23S_ribosomal_RNA
:Eco_1:3941727-3944630"
-
-
"Rfam=AJ294423.1/19-165_RF00002;5_8S_rRNA;|3e-11"
-
-
-
-
-
- 		2693,941,754 – 3,941,874+ 412092.92 -1.921.030.980034
2703,941,754 – 3,941,874- 412092.92 -1.240.990.565298
2713,941,794 – 3,941,914+ 412091.25 -3.281.070.999515
2723,941,794 – 3,941,914- 412091.25 -2.281.000.994252
2733,941,834 – 3,941,954+ 412092.92 -4.741.040.994882
2743,941,834 – 3,941,954- 412092.92 -2.171.070.994015
84Eco_13,941,994 – 3,942,114"known=rRNA.12:23S_ribosomal_RNA
:Eco_1:3941727-3944630"
-
-
-
-
-
-
-
-
- 		2753,941,994 – 3,942,114+ 412092.08 -2.520.970.995944
85Eco_13,942,312 – 3,942,792"known=rRNA.12:23S_ribosomal_RNA
:Eco_1:3941727-3944630"
-
"RNAmicro=f:3942552_t:3942671_strand:+_p:0.653562"
-
-
-
-
-
-
- 		2763,942,312 – 3,942,432+ 412096.81 -2.321.010.973633
2773,942,352 – 3,942,472+ 412097.64 -1.570.970.569339
2783,942,392 – 3,942,512+ 412099.58 -3.271.000.939461
2793,942,432 – 3,942,552+ 412099.58 -1.911.000.670074
2803,942,552 – 3,942,672- 412096.25 -1.670.980.793010
2813,942,672 – 3,942,792+ 412099.58 -1.780.980.533321
86Eco_13,980,531 – 3,980,610"known=tRNA.68:tRNA-His
:Eco_1:3980532-3980608"
"tRNAscan=type:His:anticodon:GTG
f:3980532_t:3980605_strand=+_cove=71.64"
-
"Rfam=AE014017.1/291180-291108_RF00005;tRNA;|5e-26"
-
-
-
-
-
- 		2823,980,531 – 3,980,610+ 37998.31 -2.801.000.987827
2833,980,531 – 3,980,610- 37998.31 -4.661.000.981554
87Eco_13,988,954 – 3,989,044-
-
-
-
-
-
-
-
-
- 		2843,988,954 – 3,989,044+ 39099.26 -1.471.000.638158
88Eco_13,999,200 – 3,999,398-
-
-
-
-
-
-
-
-
- 		2853,999,200 – 3,999,320+ 312097.78 -1.990.970.866690
2863,999,200 – 3,999,320- 312097.78 -1.500.980.604901
2873,999,240 – 3,999,358+ 312097.77 -4.311.000.989202
2883,999,240 – 3,999,358- 312097.77 -3.700.970.989826
2893,999,280 – 3,999,398+ 312097.77 -3.630.990.993205
2903,999,280 – 3,999,398- 312097.77 -2.010.980.888673
89Eco_14,033,408 – 4,034,008"known=rRNA.14:16S_ribosomal_RNA
:Eco_1:4033554-4035095"
-
-
"Rfam=AF227867.1/12-543_RF00177;SSU_rRNA_5;|0.0"
-
-
-
-
-
- 		2914,033,408 – 4,033,528+ 312098.33 -2.391.000.969714
2924,033,408 – 4,033,528- 312098.33 -1.801.000.845854
2934,033,448 – 4,033,568+ 312097.22 -2.791.010.991003
2944,033,488 – 4,033,608+ 312098.89 -2.130.990.922708
2954,033,528 – 4,033,648+ 312096.11 -1.871.000.889779
2964,033,648 – 4,033,768+ 312098.89 -1.351.000.543732
2974,033,688 – 4,033,808+ 312097.22 -3.011.000.993102
2984,033,728 – 4,033,848+ 312096.67 -2.540.970.972469
2994,033,808 – 4,033,928+ 312098.89 -2.250.940.886151
3004,033,888 – 4,034,008+ 3120100.00 -2.190.910.789479
3014,033,612 – 4,033,732+ 312086.67 -1.370.950.819383
90Eco_14,034,085 – 4,034,325"known=rRNA.14:16S_ribosomal_RNA
:Eco_1:4033554-4035095"
-
-
"Rfam=X97595.1/20-506_RF00177;SSU_rRNA_5;|2e-31"
-
-
-
-
-
- 		3024,034,085 – 4,034,205+ 312088.06 -1.121.000.863446
3034,034,125 – 4,034,245+ 312084.72 -1.290.970.945273
3044,034,205 – 4,034,325+ 312088.89 -3.551.010.998023
3054,034,205 – 4,034,325- 312088.89 -1.751.000.963858
91Eco_14,035,169 – 4,035,242"known=tRNA.71:tRNA-Ile
:Eco_1:4035164-4035240"
-
-
"Rfam=AP002567.1/65365-65438_RF00005;tRNA;|1e-32"
-
-
-
-
-
- 		3064,035,169 – 4,035,242- 47386.25 -1.820.830.839826
92Eco_14,035,569 – 4,035,769"known=rRNA.15:23S_ribosomal_RNA
:Eco_1:4035542-4038446"
-
-
"Rfam=AJ294423.1/19-165_RF00002;5_8S_rRNA;|3e-11"
-
-
-
-
-
- 		3074,035,569 – 4,035,689+ 412092.50 -1.961.040.984654
3084,035,569 – 4,035,689- 412092.50 -1.350.950.631277
3094,035,609 – 4,035,729+ 412090.97 -3.451.070.999541
3104,035,609 – 4,035,729- 412090.97 -2.060.980.985750
3114,035,649 – 4,035,769+ 412092.64 -4.521.020.996602
3124,035,649 – 4,035,769- 412092.64 -1.811.080.977469
93Eco_14,035,809 – 4,035,929"known=rRNA.15:23S_ribosomal_RNA
:Eco_1:4035542-4038446"
-
-
-
-
-
-
-
-
- 		3134,035,809 – 4,035,929+ 412092.08 -2.110.970.984250
94Eco_14,036,127 – 4,036,607"known=rRNA.15:23S_ribosomal_RNA
:Eco_1:4035542-4038446"
-
"RNAmicro=f:4036367_t:4036486_strand:+_p:0.653562"
-
-
-
-
-
-
- 		3144,036,127 – 4,036,247+ 412096.94 -2.191.010.958866
3154,036,167 – 4,036,287+ 412097.78 -1.820.970.766672
3164,036,207 – 4,036,327+ 412099.58 -3.271.000.939461
3174,036,247 – 4,036,367+ 412099.58 -1.911.000.670074
3184,036,367 – 4,036,487- 412096.25 -1.670.980.793010
3194,036,487 – 4,036,607+ 412099.58 -1.780.980.533321
95Eco_14,047,899 – 4,048,047"known=misc_RNA.46:Spot_42_RNA
:Eco_1:4047922-4048030"
-
-
"Rfam=BX950851.1/28750-28867_RF00021;Spot_42;|3e-38"
"Noncode=n4475,u3943,L19201,spf,Escherichia_coli|1e-57"
-
-
-
-
"ncRNAdb=Sflex_Spot42-3-AE016990|6e-62" 		3204,047,899 – 4,048,018+ 312097.77 -1.950.940.777101
3214,047,928 – 4,048,047+ 312097.77 -4.210.970.984280
3224,047,928 – 4,048,047- 312097.77 -4.200.980.987154
96Eco_14,164,536 – 4,165,136"known=rRNA.17:16S_ribosomal_RNA
:Eco_1:4164682-4166223"
-
-
"Rfam=AF227867.1/12-543_RF00177;SSU_rRNA_5;|0.0"
-
-
-
-
-
- 		3234,164,536 – 4,164,656+ 312098.33 -2.391.000.969714
3244,164,536 – 4,164,656- 312098.33 -1.801.000.845854
3254,164,576 – 4,164,696+ 312097.22 -2.791.010.991003
3264,164,616 – 4,164,736+ 312098.89 -2.130.990.922708
3274,164,656 – 4,164,776+ 312096.67 -2.041.030.957148
3284,164,736 – 4,164,856+ 312097.22 -1.421.030.689897
3294,164,776 – 4,164,896+ 312099.44 -1.571.010.723224
3304,164,816 – 4,164,936+ 312097.78 -3.171.010.994124
3314,164,856 – 4,164,976+ 312097.22 -2.680.980.979811
3324,164,936 – 4,165,056+ 312098.89 -2.250.940.886151
3334,165,016 – 4,165,136+ 3120100.00 -2.190.910.789479
3344,164,760 – 4,164,880+ 312084.44 -1.500.930.889591
3354,164,800 – 4,164,920+ 312080.83 -4.521.010.994246
3364,164,800 – 4,164,920- 312080.83 -1.920.850.946496
3374,164,840 – 4,164,960+ 312080.00 -1.900.940.994605
3384,164,880 – 4,165,000+ 312085.00 -1.450.910.793563
3394,164,880 – 4,165,000- 312085.00 -1.810.810.667101
3404,164,920 – 4,165,040+ 312093.61 -2.900.970.990734
3414,164,960 – 4,165,080+ 312096.11 -2.970.970.987273
97Eco_14,165,213 – 4,165,453"known=rRNA.17:16S_ribosomal_RNA
:Eco_1:4164682-4166223"
-
-
"Rfam=X97595.1/20-506_RF00177;SSU_rRNA_5;|2e-31"
-
-
-
-
-
- 		3424,165,213 – 4,165,333+ 312088.06 -1.121.000.863446
3434,165,253 – 4,165,373+ 312084.72 -1.290.970.945273
3444,165,333 – 4,165,453+ 312088.89 -3.551.010.998023
3454,165,333 – 4,165,453- 312088.89 -1.751.000.963858
98Eco_14,166,395 – 4,166,471"known=tRNA.73:tRNA-Glu
:Eco_1:4166395-4166470"
"tRNAscan=type:Glu:anticodon:TTC
f:4166395_t:4166466_strand=+_cove=42.83"
-
"Rfam=U55299.1/85-158_RF00005;tRNA;|1e-32"
-
-
-
-
-
- 		3464,166,395 – 4,166,471+ 57695.00 -2.751.000.999989
3474,166,395 – 4,166,471- 57695.00 -1.591.010.995020
99Eco_14,166,691 – 4,166,891"known=rRNA.18:23S_ribosomal_RNA
:Eco_1:4166664-4169567"
-
-
"Rfam=AJ294423.1/19-165_RF00002;5_8S_rRNA;|3e-11"
-
-
-
-
-
- 		3484,166,691 – 4,166,811+ 412092.92 -1.921.030.980034
3494,166,691 – 4,166,811- 412092.92 -1.240.990.565298
3504,166,731 – 4,166,851+ 412091.25 -3.281.070.999515
3514,166,731 – 4,166,851- 412091.25 -2.281.000.994252
3524,166,771 – 4,166,891+ 412092.92 -4.741.040.994882
3534,166,771 – 4,166,891- 412092.92 -2.171.070.994015
100Eco_14,166,931 – 4,167,051"known=rRNA.18:23S_ribosomal_RNA
:Eco_1:4166664-4169567"
-
-
-
-
-
-
-
-
- 		3544,166,931 – 4,167,051+ 412092.64 -2.430.970.993967
101Eco_14,167,249 – 4,167,729"known=rRNA.18:23S_ribosomal_RNA
:Eco_1:4166664-4169567"
-
"RNAmicro=f:4167489_t:4167608_strand:+_p:0.653562"
-
-
-
-
-
-
- 		3554,167,249 – 4,167,369+ 412096.81 -2.321.010.973633
3564,167,289 – 4,167,409+ 412097.64 -1.570.970.569339
3574,167,329 – 4,167,449+ 412099.58 -3.271.000.939461
3584,167,369 – 4,167,489+ 412099.58 -1.911.000.670074
3594,167,489 – 4,167,609- 412096.25 -1.670.980.793010
3604,167,609 – 4,167,729+ 412099.58 -1.780.980.533321
102Eco_14,168,453 – 4,168,571"known=rRNA.18:23S_ribosomal_RNA
:Eco_1:4166664-4169567"
-
-
-
-
-
-
-
-
- 		3614,168,453 – 4,168,571+ 312092.18 -2.910.870.941084
103Eco_14,168,611 – 4,168,731"known=rRNA.18:23S_ribosomal_RNA
:Eco_1:4166664-4169567"
-
-
-
-
-
-
-
-
- 		3624,168,611 – 4,168,731- 312097.22 -1.590.970.643040
104Eco_14,168,745 – 4,168,865"known=rRNA.18:23S_ribosomal_RNA
:Eco_1:4166664-4169567"
-
"RNAmicro=f:4168745_t:4168864_strand:-_p:0.641564"
-
-
-
-
-
-
- 		3634,168,745 – 4,168,865+ 312090.56 -1.191.050.892267
105Eco_14,173,495 – 4,173,580"known=tRNA.75:tRNA-Tyr
:Eco_1:4173495-4173579"
"tRNAscan=type:Pseudo:anticodon:GTA
f:4173495_t:4173575_strand=+_cove=34.59"
-
"Rfam=X57091.1/249-330_RF00005;tRNA;|3e-40"
-
-
-
-
-
"ncRNAdb=Sente_RtT-9-AE016839|8e-26" 		3644,173,495 – 4,173,580+ 68591.51 -1.370.940.909301
3654,173,495 – 4,173,580- 68591.51 -1.380.880.640954
106Eco_14,173,674 – 4,173,858"known=tRNA.76:tRNA-Gly
:Eco_1:4173696-4173770"
"tRNAscan=type:Gly:anticodon:TCC
f:4173695_t:4173787_strand=+_cove=63.24"
-
"Rfam=BX950851.1/250174-250246_RF00005;tRNA;|4e-35"
-
-
-
-
-
- 		3664,173,674 – 4,173,794+ 312082.22 -1.420.930.939456
3674,173,674 – 4,173,794- 312082.22 -3.210.920.997139
3684,173,714 – 4,173,834- 312092.78 -2.670.960.985339
3694,173,738 – 4,173,858+ 312090.28 -2.360.950.971937
3704,173,738 – 4,173,858- 312090.28 -2.970.930.985269
3714,173,774 – 4,173,856+ 48293.90 -3.411.020.998607
3724,173,774 – 4,173,856- 48293.90 -4.761.020.991503
107Eco_14,177,798 – 4,178,019-
-
-
-
-
-
-
-
-
- 		3734,177,798 – 4,177,918+ 312095.56 -2.801.010.993284
3744,177,798 – 4,177,918- 312095.56 -2.380.940.941455
3754,177,838 – 4,177,958+ 312094.44 -3.650.960.992779
3764,177,838 – 4,177,958- 312094.44 -3.080.910.972238
3774,177,878 – 4,177,997+ 312090.53 -3.430.880.976234
3784,177,878 – 4,177,997- 312090.53 -4.040.890.977664
3794,177,900 – 4,178,019+ 312090.53 -3.590.880.976221
3804,177,900 – 4,178,019- 312090.53 -3.130.830.938591
108Eco_14,178,949 – 4,179,268-
-
"RNAmicro=f:4179069_t:4179188_strand:+_p:0.827701"
-
-
-
-
-
-
- 		3814,178,949 – 4,179,069+ 3120100.00 -5.760.960.865581
3824,178,949 – 4,179,069- 3120100.00 -5.731.000.906145
3834,178,989 – 4,179,109+ 3120100.00 -3.801.000.989713
3844,178,989 – 4,179,109- 3120100.00 -3.511.000.990463
3854,179,069 – 4,179,189+ 312097.22 -3.650.980.992563
3864,179,069 – 4,179,189- 312097.22 -3.490.930.980693
3874,179,148 – 4,179,268+ 312096.11 -1.460.970.546187
109Eco_14,206,024 – 4,206,624"known=rRNA.20:16S_ribosomal_RNA
:Eco_1:4206170-4207711"
-
-
"Rfam=AF227867.1/12-543_RF00177;SSU_rRNA_5;|0.0"
-
-
-
-
-
- 		3884,206,024 – 4,206,144+ 312099.44 -2.541.000.975159
3894,206,024 – 4,206,144- 312099.44 -1.591.000.718969
3904,206,064 – 4,206,184+ 312099.44 -3.011.000.988551
3914,206,104 – 4,206,224+ 3120100.00 -2.221.000.942316
3924,206,144 – 4,206,264+ 312097.78 -2.051.020.949349
3934,206,224 – 4,206,344+ 312097.22 -1.421.030.689897
3944,206,264 – 4,206,384+ 312099.44 -1.571.010.723224
3954,206,304 – 4,206,424+ 312098.33 -3.211.010.993667
3964,206,344 – 4,206,464+ 312097.78 -2.720.980.979555
3974,206,424 – 4,206,544+ 312098.89 -2.250.940.886151
3984,206,504 – 4,206,624+ 3120100.00 -2.190.910.789479
3994,206,248 – 4,206,368+ 312084.44 -1.500.930.889591
4004,206,288 – 4,206,408+ 312080.83 -4.521.010.994246
4014,206,288 – 4,206,408- 312080.83 -1.920.850.946496
4024,206,328 – 4,206,448+ 312080.00 -1.900.940.994605
4034,206,368 – 4,206,488+ 312085.00 -1.450.910.793563
4044,206,368 – 4,206,488- 312085.00 -1.810.810.667101
4054,206,408 – 4,206,528+ 312093.61 -2.900.970.990734
4064,206,448 – 4,206,568+ 312096.11 -2.970.970.987273
110Eco_14,206,701 – 4,206,941"known=rRNA.20:16S_ribosomal_RNA
:Eco_1:4206170-4207711"
-
-
"Rfam=X97595.1/20-506_RF00177;SSU_rRNA_5;|2e-31"
-
-
-
-
-
- 		4074,206,701 – 4,206,821+ 312088.06 -1.121.000.863446
4084,206,741 – 4,206,861+ 312084.72 -1.290.970.945273
4094,206,821 – 4,206,941+ 312088.89 -3.551.010.998023
4104,206,821 – 4,206,941- 312088.89 -1.751.000.963858
111Eco_14,208,093 – 4,208,293"known=rRNA.21:23S_ribosomal_RNA
:Eco_1:4208066-4210969"
-
-
"Rfam=AJ294423.1/19-165_RF00002;5_8S_rRNA;|3e-11"
-
-
-
-
-
- 		4114,208,093 – 4,208,213+ 412092.92 -1.921.030.980034
4124,208,093 – 4,208,213- 412092.92 -1.240.990.565298
4134,208,133 – 4,208,253+ 412091.25 -3.281.070.999515
4144,208,133 – 4,208,253- 412091.25 -2.281.000.994252
4154,208,173 – 4,208,293+ 412092.92 -4.741.040.994882
4164,208,173 – 4,208,293- 412092.92 -2.171.070.994015
112Eco_14,208,333 – 4,208,453"known=rRNA.21:23S_ribosomal_RNA
:Eco_1:4208066-4210969"
-
-
-
-
-
-
-
-
- 		4174,208,333 – 4,208,453+ 412092.64 -2.430.970.993967
113Eco_14,208,651 – 4,209,131"known=rRNA.21:23S_ribosomal_RNA
:Eco_1:4208066-4210969"
-
"RNAmicro=f:4208891_t:4209010_strand:+_p:0.653562"
-
-
-
-
-
-
- 		4184,208,651 – 4,208,771+ 412096.81 -2.321.010.973633
4194,208,691 – 4,208,811+ 412097.64 -1.570.970.569339
4204,208,731 – 4,208,851+ 412099.58 -3.271.000.939461
4214,208,771 – 4,208,891+ 412099.58 -1.911.000.670074
4224,208,891 – 4,209,011- 412096.25 -1.670.980.793010
4234,209,011 – 4,209,131+ 412099.58 -1.780.980.533321
114Eco_14,209,855 – 4,209,973"known=rRNA.21:23S_ribosomal_RNA
:Eco_1:4208066-4210969"
-
-
-
-
-
-
-
-
- 		4244,209,855 – 4,209,973+ 312092.18 -2.910.870.941084
115Eco_14,210,013 – 4,210,133"known=rRNA.21:23S_ribosomal_RNA
:Eco_1:4208066-4210969"
-
-
-
-
-
-
-
-
- 		4254,210,013 – 4,210,133- 312097.22 -1.590.970.643040
116Eco_14,210,147 – 4,210,267"known=rRNA.21:23S_ribosomal_RNA
:Eco_1:4208066-4210969"
-
"RNAmicro=f:4210147_t:4210266_strand:-_p:0.641564"
-
-
-
-
-
-
- 		4264,210,147 – 4,210,267+ 312090.56 -1.191.050.892267
117Eco_14,255,029 – 4,255,138-
-
-
-
-
-
-
-
-
- 		4274,255,029 – 4,255,138+ 310983.79 -1.870.710.613569
118Eco_14,360,574 – 4,360,674"known=tRNA.79:tRNA-Phe
:Eco_1:4360574-4360649"
"tRNAscan=type:Phe:anticodon:GAA
f:4360576_t:4360650_strand=-_cove=75.98"
-
"Rfam=AJ414142.1/60831-60759_RF00005;tRNA;|2e-35"
-
-
-
-
-
- 		4284,360,574 – 4,360,674+ 410098.00 -2.350.970.936776
4294,360,574 – 4,360,674- 410098.00 -1.600.990.599037
119Eco_14,390,381 – 4,390,461"known=tRNA.80:tRNA-Gly
:Eco_1:4390383-4390458"
"tRNAscan=type:Gly:anticodon:GCC
f:4390382_t:4390455_strand=+_cove=71.11"
-
"Rfam=AE008904.1/10704-10776_RF00005;tRNA;|1e-35"
-
-
-
-
-
- 		4304,390,381 – 4,390,461+ 68096.33 -2.461.000.999973
4314,390,381 – 4,390,461- 68096.33 -2.031.000.999883
120Eco_14,390,494 – 4,390,573"known=tRNA.81:tRNA-Gly
:Eco_1:4390495-4390570"
"tRNAscan=type:Gly:anticodon:GCC
f:4390494_t:4390566_strand=+_cove=71.11"
-
"Rfam=AE008904.1/10704-10776_RF00005;tRNA;|1e-35"
-
-
-
-
-
- 		4324,390,494 – 4,390,573+ 67996.70 -2.531.000.999976
4334,390,494 – 4,390,573- 67996.70 -2.091.000.999909
121Eco_14,390,606 – 4,390,686"known=tRNA.82:tRNA-Gly
:Eco_1:4390606-4390681"
"tRNAscan=type:Gly:anticodon:GCC
f:4390606_t:4390675_strand=+_cove=57.72"
-
"Rfam=AE008904.1/10704-10776_RF00005;tRNA;|6e-35"
-
-
-
-
-
- 		4344,390,606 – 4,390,686+ 68096.16 -2.381.000.999969
4354,390,606 – 4,390,686- 68096.16 -1.871.010.999840
122Eco_14,494,393 – 4,494,513"known=tRNA.83:tRNA-Leu
:Eco_1:4494428-4494512"
"tRNAscan=type:Leu:anticodon:CAA
f:4494427_t:4494542_strand=+_cove=53.00"
-
"Rfam=M10747.1/264-345_RF00005;tRNA;|2e-38"
-
-
-
-
-
- 		4364,494,393 – 4,494,513+ 3120100.00 -1.780.950.694070
123Eco_14,604,312 – 4,604,472"known=tRNA.86:tRNA-Leu
:Eco_1:4604338-4604424"
"tRNAscan=type:Leu:anticodon:CAG
f:4604340_t:4604451_strand=-_cove=53.82"
-
"Rfam=AL627284.1/46512-46429_RF00005;tRNA;|5e-34"
-
-
-
-
-
- 		4374,604,312 – 4,604,432+ 312098.89 -2.010.940.806198
4384,604,352 – 4,604,472+ 312097.78 -2.220.930.864560

Generated by rnazIndex.pl (part of RNAz 1.0) on Fri Dec 1 16:41:24 2006