Sequence ID | Eco_1 |
---|---|
Location | 4,166,395 – 4,166,471 |
Length | 76 |
Max. P | 0.999989 |
Location | 4,166,395 – 4,166,471 |
---|---|
Length | 76 |
Sequences | 5 |
Columns | 76 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -33.84 |
Consensus MFE | -34.00 |
Energy contribution | -33.00 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.17 |
Mean z-score | -2.75 |
Structure conservation index | 1.00 |
SVM decision value | 5.52 |
SVM RNA-class probability | 0.999989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4166395 76 + 1 GUCCCCUUCGUCUAGAGGCCCAGGACACCGCCCUUUCACGGCGGUAACAGGGGUUCGAAUCCCCUAGGGGACGCCA (((((((..((((.(.....).))))((((((.......))))))...(((((.......)))))))))))).... ( -34.80) >Lpn_1 1 76 + 1 GUCCCCAUCGUCUAGAGGCCUAGGACAUCGCCCUUUCACGGCGGUAACGGGGGUUCGAAUCCCCCUGGGGACGCCA (((((((..((((((....))).)))((((((.......))))))...(((((.......)))))))))))).... ( -35.50) >Sfl_1 1 76 + 1 GUCCCCUUCGUCUAGAGGCCCAGGACACCGCCCUUUCACGGCGGUAACAGGGGUUCGAAUCCCCUAGGGGACGCCA (((((((..((((.(.....).))))((((((.......))))))...(((((.......)))))))))))).... ( -34.80) >Sty_1 1 76 + 1 GUCCCCUUCGUCUAGAGGCCCAGGACACCGCCCUUUCACGGCGGUAACAGGGGUUCGAAUCCCCUAGGGGACGCCA (((((((..((((.(.....).))))((((((.......))))))...(((((.......)))))))))))).... ( -34.80) >Ype_1 1 76 + 1 GUCCCCAUCGUCUAGAGGCCUAGGACACUGCCCUUUCACGGCUGUAACAGGGGUUCGAAUCCCCUUGGGGACGCCA (((((((..((((((....))).)))((.(((.......))).))...(((((.......)))))))))))).... ( -29.30) >consensus GUCCCCUUCGUCUAGAGGCCCAGGACACCGCCCUUUCACGGCGGUAACAGGGGUUCGAAUCCCCUAGGGGACGCCA (((((((..((((.(.....).))))((((((.......))))))...(((((.......)))))))))))).... (-34.00 = -33.00 + -1.00)
Location | 4,166,395 – 4,166,471 |
---|---|
Length | 76 |
Sequences | 5 |
Columns | 76 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -32.70 |
Consensus MFE | -33.12 |
Energy contribution | -32.48 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.59 |
Structure conservation index | 1.01 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.995020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4166395 76 - 1 UGGCGUCCCCUAGGGGAUUCGAACCCCUGUUACCGCCGUGAAAGGGCGGUGUCCUGGGCCUCUAGACGAAGGGGAC ....((((((((((((.......)))))...((((((.......))))))(((.(((....))))))..))))))) ( -34.00) >Lpn_1 1 76 - 1 UGGCGUCCCCAGGGGGAUUCGAACCCCCGUUACCGCCGUGAAAGGGCGAUGUCCUAGGCCUCUAGACGAUGGGGAC ....((((((((((((.......))))).....((((.......)))).((((.(((....))))))).))))))) ( -32.90) >Sfl_1 1 76 - 1 UGGCGUCCCCUAGGGGAUUCGAACCCCUGUUACCGCCGUGAAAGGGCGGUGUCCUGGGCCUCUAGACGAAGGGGAC ....((((((((((((.......)))))...((((((.......))))))(((.(((....))))))..))))))) ( -34.00) >Sty_1 1 76 - 1 UGGCGUCCCCUAGGGGAUUCGAACCCCUGUUACCGCCGUGAAAGGGCGGUGUCCUGGGCCUCUAGACGAAGGGGAC ....((((((((((((.......)))))...((((((.......))))))(((.(((....))))))..))))))) ( -34.00) >Ype_1 1 76 - 1 UGGCGUCCCCAAGGGGAUUCGAACCCCUGUUACAGCCGUGAAAGGGCAGUGUCCUAGGCCUCUAGACGAUGGGGAC ....((((((((((((.......)))))(((...(((.....(((((...))))).))).....)))..))))))) ( -28.60) >consensus UGGCGUCCCCUAGGGGAUUCGAACCCCUGUUACCGCCGUGAAAGGGCGGUGUCCUGGGCCUCUAGACGAAGGGGAC ....((((((((((((.......)))))...((((((.......))))))(((.(((....))))))..))))))) (-33.12 = -32.48 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:07:01 2006