Sequence ID | Eco_1 |
---|---|
Location | 4,047,899 – 4,048,047 |
Length | 148 |
Max. P | 0.987154 |
Location | 4,047,899 – 4,048,018 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -32.23 |
Consensus MFE | -30.22 |
Energy contribution | -30.00 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.94 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4047899 119 + 1 CAAAAAAGAGUAAAGUUAGUCGCGUAGGGUACAGAGGUAAGAUGUUCUAUCUUUCAGACCUUUUACUUCACGUAAUCGGAUUUGGCUGAAUAUUUUAGCCGCCCCAGUCAGUA-AUGACU .......((.((....)).))((((..((((.((((((((((((...))))))....))))))))))..))))....((...(((((((.....)))))))..))(((((...-.))))) ( -32.30) >Sfl_1 1 119 + 1 CAAAAAAGAGUAAAGUUAGUCGCGUAGGGUACAGAGGUAAGAUGUUCUAUCUUUCAGACCUUUUACUUCACGUAAUCGGAUUUGGCUGAAUAUUUUAGCCGCCCCAGUCAGUA-AUGACU .......((.((....)).))((((..((((.((((((((((((...))))))....))))))))))..))))....((...(((((((.....)))))))..))(((((...-.))))) ( -32.30) >Sty_1 1 120 + 1 CAAAAAAGAGUAAAGUUAUUCACGUAGGGUACAGAGGUAAGAUGUUCUAUCUUUCAGACCUUUUACUUCACGUAAUCGGAUUUGGCUGAAUAUUUUAGCCGCCCCAGUCAGUUUAUGACU .......(((((....)))))((((..((((.((((((((((((...))))))....))))))))))..))))....((...(((((((.....)))))))..))(((((.....))))) ( -32.10) >consensus CAAAAAAGAGUAAAGUUAGUCGCGUAGGGUACAGAGGUAAGAUGUUCUAUCUUUCAGACCUUUUACUUCACGUAAUCGGAUUUGGCUGAAUAUUUUAGCCGCCCCAGUCAGUA_AUGACU .....................((((..((((.((((((((((((...))))))....))))))))))..))))....((...(((((((.....)))))))..))(((((.....))))) (-30.22 = -30.00 + -0.22)
Location | 4,047,928 – 4,048,047 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -42.27 |
Consensus MFE | -40.90 |
Energy contribution | -40.90 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -4.21 |
Structure conservation index | 0.97 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4047928 119 + 1 UACAGAGGUAAGAUGUUCUAUCUUUCAGACCUUUUACUUCACGUAAUCGGAUUUGGCUGAAUAUUUUAGCCGCCCCAGUCAGUA-AUGACUGGGGCGUUUUUUAUUGGGCGAAAGAAAAG ....(((((((((.((.((.......)))).))))))))).(((..........((((((.....))))))((((((((((...-.))))))))))............)))......... ( -42.70) >Sfl_1 30 119 + 1 UACAGAGGUAAGAUGUUCUAUCUUUCAGACCUUUUACUUCACGUAAUCGGAUUUGGCUGAAUAUUUUAGCCGCCCCAGUCAGUA-AUGACUGGGGCGUUUUUUAUUGGGCGAAAGAAAAG ....(((((((((.((.((.......)))).))))))))).(((..........((((((.....))))))((((((((((...-.))))))))))............)))......... ( -42.70) >Sty_1 30 120 + 1 UACAGAGGUAAGAUGUUCUAUCUUUCAGACCUUUUACUUCACGUAAUCGGAUUUGGCUGAAUAUUUUAGCCGCCCCAGUCAGUUUAUGACUGGGGCGUUUUUUAUUGUGCGCAAGAAAAG ....(((((((((.((.((.......)))).))))))))).((((.........((((((.....))))))((((((((((.....))))))))))...........))))......... ( -41.40) >consensus UACAGAGGUAAGAUGUUCUAUCUUUCAGACCUUUUACUUCACGUAAUCGGAUUUGGCUGAAUAUUUUAGCCGCCCCAGUCAGUA_AUGACUGGGGCGUUUUUUAUUGGGCGAAAGAAAAG ....(((((((((.((.((.......)))).))))))))).(((..........((((((.....))))))((((((((((.....))))))))))............)))......... (-40.90 = -40.90 + -0.00)
Location | 4,047,928 – 4,048,047 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -35.63 |
Consensus MFE | -34.87 |
Energy contribution | -35.20 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -4.20 |
Structure conservation index | 0.98 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4047928 119 - 1 CUUUUCUUUCGCCCAAUAAAAAACGCCCCAGUCAU-UACUGACUGGGGCGGCUAAAAUAUUCAGCCAAAUCCGAUUACGUGAAGUAAAAGGUCUGAAAGAUAGAACAUCUUACCUCUGUA (((((.((((((............((((((((((.-...))))))))))((((.........))))............)))))).)))))......(((((.....)))))......... ( -36.00) >Sfl_1 30 119 - 1 CUUUUCUUUCGCCCAAUAAAAAACGCCCCAGUCAU-UACUGACUGGGGCGGCUAAAAUAUUCAGCCAAAUCCGAUUACGUGAAGUAAAAGGUCUGAAAGAUAGAACAUCUUACCUCUGUA (((((.((((((............((((((((((.-...))))))))))((((.........))))............)))))).)))))......(((((.....)))))......... ( -36.00) >Sty_1 30 120 - 1 CUUUUCUUGCGCACAAUAAAAAACGCCCCAGUCAUAAACUGACUGGGGCGGCUAAAAUAUUCAGCCAAAUCCGAUUACGUGAAGUAAAAGGUCUGAAAGAUAGAACAUCUUACCUCUGUA ((((((((.(((............((((((((((.....))))))))))((((.........))))............)))))).)))))......(((((.....)))))......... ( -34.90) >consensus CUUUUCUUUCGCCCAAUAAAAAACGCCCCAGUCAU_UACUGACUGGGGCGGCUAAAAUAUUCAGCCAAAUCCGAUUACGUGAAGUAAAAGGUCUGAAAGAUAGAACAUCUUACCUCUGUA (((((.((((((............((((((((((.....))))))))))((((.........))))............)))))).)))))......(((((.....)))))......... (-34.87 = -35.20 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:40 2006