Sequence ID | Eco_1 |
---|---|
Location | 4,036,127 – 4,036,607 |
Length | 480 |
Max. P | 0.958866 |
Location | 4,036,127 – 4,036,247 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -40.97 |
Consensus MFE | -41.28 |
Energy contribution | -40.90 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.03 |
Mean z-score | -2.19 |
Structure conservation index | 1.01 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4036127 120 + 1 ACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGA ..((((((((((((((..((((..((.....))..))))...((....))..((((.....)))).....))))))))))))))..(((.....))).(((((.(((...)))))))).. ( -41.60) >Sfl_1 599 120 + 1 ACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGA ..((((((((((((((..((((..((.....))..))))...((....))..((((.....)))).....))))))))))))))..(((.....))).(((((.(((...)))))))).. ( -41.60) >Sty_1 601 120 + 1 ACUUAUAUUCUGUAGCAAGGUUAACCGUAUAGGGGAGCCGUAGGGAAACCGAGUCUUAACCGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGA ..((((((((((((((..((((..((.....))..))))...((....))..((((.....)))).....))))))))))))))..(((.....))).(((((.(((...)))))))).. ( -40.90) >Ype_1 598 120 + 1 ACUUAUAUUUUGUAGCAAGGUUAACCGAAUAGGGGAGCCGUAGGGAAACCGAGUCUUAACUGGGCGUCUAGUUGCAAGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGA ..((((((((((((((..((((..((.....))..))))...((....))((((((.....)))).))..))))))))))))))..(((.....))).(((((.(((...)))))))).. ( -39.80) >consensus ACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGA ..((((((((((((((..((((..((.....))..))))...((....))..((((.....)))).....))))))))))))))..(((.....))).(((((.(((...)))))))).. (-41.28 = -40.90 + -0.38)
Location | 4,036,167 – 4,036,287 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -40.05 |
Consensus MFE | -38.76 |
Energy contribution | -38.82 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.82 |
Structure conservation index | 0.97 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4036167 120 + 1 AAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUG ..((....)).((((...((((((.((......)).((((....))))....))))))(((((.(((...))))))))...((((.(((....(.....)....))).)))))))).... ( -39.90) >Sfl_1 639 120 + 1 AAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUG ..((....)).((((...((((((.((......)).((((....))))....))))))(((((.(((...))))))))...((((.(((....(.....)....))).)))))))).... ( -39.90) >Sty_1 641 120 + 1 UAGGGAAACCGAGUCUUAACCGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUG ..((....)).((((...((((((.((......)).((((....))))....))))))(((((.(((...))))))))...((((.(((....(.....)....))).)))))))).... ( -42.10) >Ype_1 638 120 + 1 UAGGGAAACCGAGUCUUAACUGGGCGUCUAGUUGCAAGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUG ..((....)).((((.....(((.(.((((((((....((....((((((...((..((((((.(((...)))))))))..)))))))).))..)))))))).).)))....)))).... ( -38.30) >consensus AAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUG ..((....)).((((...((((((.((......)).((((....))))....))))))(((((.(((...))))))))...((((.(((....(.....)....))).)))))))).... (-38.76 = -38.82 + 0.06)
Location | 4,036,207 – 4,036,327 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.58 |
Mean single sequence MFE | -42.67 |
Consensus MFE | -42.84 |
Energy contribution | -42.65 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -3.27 |
Structure conservation index | 1.00 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4036207 120 + 1 AUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGG ......((...((((......(((((((..((((((((...((((((......))))))....))))...(((.(((((........)))))))).)).))..)))))))))))....)) ( -42.20) >Sfl_1 679 120 + 1 AUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGG ......((...((((......(((((((..((((((((...((((((......))))))....))))...(((.(((((........)))))))).)).))..)))))))))))....)) ( -42.20) >Sty_1 681 120 + 1 AUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACCUGUGGCUGGGGGUGAAAGG ......((...((((......(((((((((((((((((...((((((......))))))....))))...(((.(((((........)))))))).)).)))))))))))))))....)) ( -44.10) >Ype_1 678 120 + 1 AUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGG ......((...((((......(((((((..((((((((...((((((......))))))....))))...(((.(((((........)))))))).)).))..)))))))))))....)) ( -42.20) >consensus AUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGG ......((...((((......(((((((..((((((((...((((((......))))))....))))...(((.(((((........)))))))).)).))..)))))))))))....)) (-42.84 = -42.65 + -0.19)
Location | 4,036,247 – 4,036,367 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.58 |
Mean single sequence MFE | -38.52 |
Consensus MFE | -38.71 |
Energy contribution | -38.52 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.91 |
Structure conservation index | 1.00 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4036247 120 + 1 AGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUA .((((((......))))))(((((((((..(((.(((((........)))))))).....((((..((.((..(((........)))..)).))..)))).))))))))).(....)... ( -38.00) >Sfl_1 719 120 + 1 AGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUA .((((((......))))))(((((((((..(((.(((((........)))))))).....((((..((.((..(((........)))..)).))..)))).))))))))).(....)... ( -38.00) >Sty_1 721 120 + 1 AGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACCUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUA .((((((......))))))(((((((((..(((.(((((........)))))))).....((((..((.((..(((........)))..)).))..)))).))))))))).(....)... ( -40.10) >Ype_1 718 120 + 1 AGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUA .((((((......))))))(((((((((..(((.(((((........)))))))).....((((..((.((..(((........)))..)).))..)))).))))))))).(....)... ( -38.00) >consensus AGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUA .((((((......))))))(((((((((..(((.(((((........)))))))).....((((..((.((..(((........)))..)).))..)))).))))))))).(....)... (-38.71 = -38.52 + -0.19)
Location | 4,036,367 – 4,036,487 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -41.58 |
Consensus MFE | -40.62 |
Energy contribution | -40.75 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.03 |
Mean z-score | -1.67 |
Structure conservation index | 0.98 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4036367 120 - 1 UGUCUCCCGUGAUAACAUUCUCCGGUAUUCGCAGUUUGCAUCGGGUUGGUAAGUCGGGAUGACCCCCUUGCCGAAACAGUGCUCUACCCCCGGAGAUGAAUUCACGAGGCGCUACCUAAA .(((((..((((...(((.((((((.....(.((...((((.(..((((((((..(((....))).))))))))..).)))).)).)..)))))))))...))))))))).......... ( -43.00) >Sfl_1 839 120 - 1 UGUCUCCCGUGAUAACAUUCUCCGGUAUUCGCAGUUUGCAUCGGGUUGGUAAGUCGGGAUGACCCCCUUGCCGAAACAGUGCUCUACCCCCGGAGAUGAAUUCACGAGGCGCUACCUAAA .(((((..((((...(((.((((((.....(.((...((((.(..((((((((..(((....))).))))))))..).)))).)).)..)))))))))...))))))))).......... ( -43.00) >Sty_1 841 120 - 1 UGUCUCCCGUGAUAACAUUCUCCGGUAUUCGCAGUUUGCAUCGGGUUGGUAAGCCGGGAUGGCCCCCUAGCCGAAACAGUGCUCUACCCCCGGAGAUGAAUUCACGAGGCGCUACCUAAA .(((((..((((...(((.((((((.....(.((...((((.(..(((((.((..(((....))).)).)))))..).)))).)).)..)))))))))...))))))))).......... ( -39.00) >Ype_1 838 120 - 1 UGUCUCCCGUGAUAACAUUCUUCGGUAUUCGGAGUUUGCAUCGGUUUGGUAAGCCGGGAUGGCCCCCUAGCCGAAACAGUGCUCUACCCCCGAAGAUGAGUUCACGAGGCGCUACCUAAA .(((((..((((...(((.((((((.....((((((((..((((((.((...(((.....)))..)).))))))..))).)))))....)))))))))...))))))))).......... ( -41.30) >consensus UGUCUCCCGUGAUAACAUUCUCCGGUAUUCGCAGUUUGCAUCGGGUUGGUAAGCCGGGAUGACCCCCUAGCCGAAACAGUGCUCUACCCCCGGAGAUGAAUUCACGAGGCGCUACCUAAA .(((((..((((...(((.((((((.......((...((((.(..((((((((..(((....))).))))))))..).)))).))....)))))))))...))))))))).......... (-40.62 = -40.75 + 0.12)
Location | 4,036,487 – 4,036,607 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.58 |
Mean single sequence MFE | -44.10 |
Consensus MFE | -43.12 |
Energy contribution | -43.12 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.98 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4036487 120 + 1 CACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCU ((((((((..(....)..))))))))....(((......))).((((.........))))((((.(((.(((((..((.(....).)).((((....))))...))))).))).)))).. ( -44.30) >Sfl_1 959 120 + 1 CACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCU ((((((((..(....)..))))))))....(((......))).((((.........))))((((.(((.(((((..((.(....).)).((((....))))...))))).))).)))).. ( -44.30) >Sty_1 961 120 + 1 CACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCU ((((((((..(....)..))))))))....(((......))).((((.........))))((((.(((.(((((..((.(....).)).((((....))))...))))).))).)))).. ( -44.30) >Ype_1 958 120 + 1 CACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCACAGACAGCCAGGAUGUUGGCU ((((((((..(....)..))))))))....(((......))).....((((((.....(((((....(((.(((........))).)))))))).(((.......))).....)))))). ( -43.50) >consensus CACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCU ((((((((..(....)..))))))))....(((......))).....((((((.....(((((....(((.(((........))).)))))))).(((.......))).....)))))). (-43.12 = -43.12 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:37 2006