Sequence ID | Eco_1 |
---|---|
Location | 4,035,809 – 4,035,929 |
Length | 120 |
Max. P | 0.984250 |
Location | 4,035,809 – 4,035,929 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.08 |
Mean single sequence MFE | -44.30 |
Consensus MFE | -42.95 |
Energy contribution | -42.08 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.33 |
Mean z-score | -2.11 |
Structure conservation index | 0.97 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4035809 120 + 1 CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGUGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU ((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -44.40) >Sfl_1 281 120 + 1 CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGUGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUACUGUGAGCUCGAUGAGUAGGGCGGGACACGU ((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -45.40) >Sty_1 281 120 + 1 CCAGAGCCUGAAUCAGCAUGUGUGUUAGUGGAAGCGUCUGGAAAGGUGCGCGAUACAGGGUGACAGCCCCGUACACAAAAGCGCAUGUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU ((...((((....(((((((((((((.(((...((..((....))..))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -45.30) >Ype_1 281 120 + 1 CCAGAGUCUGAAUCAGUUUGUGUGUUAGUGGAAGCGUCUGGAAAGUCGCACGGUACAGGGUGAUAGUCCCGUACACCAAAAUGCACAGGCUGUGAACUCGAUGAGUAGGGCGGGACACGU ((...((((....(((((((((((((..(((..(((.((....)).)))...((((.(((.......))))))).))).)))))))))))))...((((...)))).)))).))...... ( -42.10) >consensus CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU ((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... (-42.95 = -42.08 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:32 2006