Sequence ID | Eco_1 |
---|---|
Location | 4,035,169 – 4,035,242 |
Length | 73 |
Max. P | 0.839826 |
Location | 4,035,169 – 4,035,242 |
---|---|
Length | 73 |
Sequences | 4 |
Columns | 73 |
Reading direction | reverse |
Mean pairwise identity | 86.25 |
Mean single sequence MFE | -20.60 |
Consensus MFE | -17.12 |
Energy contribution | -16.75 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.82 |
Structure conservation index | 0.83 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4035169 73 - 1 UUGGUAGGCCUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA ..((((((..((.((((.......)))))).))).)))....((((((((........))).)))))...... ( -21.70) >Hin_1 1 64 - 1 ---------CUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA ---------.((.((((.......))))))....((((((.....)))))).((((.........)))).... ( -17.60) >Lpn_1 1 60 - 1 -------------GUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGAUCUAACCAACUGAUCUACA -------------((((.......))))......((((((.....)))))).((((.........)))).... ( -15.10) >Ype_1 1 73 - 1 UUGGUGGGUCUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA ..((((((((.(.((((.......))))))))).))))....((((((((........))).)))))...... ( -28.00) >consensus _________CUGAGUGGACUUGAACCACCGACCUCACCCUUAUCAGGGGUGCGCUCUAACCACCUGAGCUACA .............((((.......))))......((((((.....)))))).((((.........)))).... (-17.12 = -16.75 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:25 2006