Sequence ID | Eco_1 |
---|---|
Location | 3,980,531 – 3,980,610 |
Length | 79 |
Max. P | 0.987827 |
Location | 3,980,531 – 3,980,610 |
---|---|
Length | 79 |
Sequences | 3 |
Columns | 79 |
Reading direction | forward |
Mean pairwise identity | 98.31 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -30.20 |
Energy contribution | -30.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.80 |
Structure conservation index | 1.00 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3980531 79 + 1 UGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUUGUCGUGGGUUCGAAUCCCAUUAGCCACCCCAU .((((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))).... ( -30.20) >Hin_1 1 79 + 1 UGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUUGUCGUGGGUUCGAAUCCCAUUAGCCACCCCAU .((((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))).... ( -30.20) >Ype_1 1 78 + 1 UGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUUGUCGUGGGUUCGAGUCCCAUUAGCCACCCCA- .((((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))))...- ( -30.20) >consensus UGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUUGUCGUGGGUUCGAAUCCCAUUAGCCACCCCAU .((((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))).... (-30.20 = -30.20 + -0.00)
Location | 3,980,531 – 3,980,610 |
---|---|
Length | 79 |
Sequences | 3 |
Columns | 79 |
Reading direction | reverse |
Mean pairwise identity | 98.31 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -32.30 |
Energy contribution | -32.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -4.66 |
Structure conservation index | 1.00 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3980531 79 - 1 AUGGGGUGGCUAAUGGGAUUCGAACCCACGACAACUGGAAUCACAAUCCAGGGCUCUACCAACUGAGCUAUAGCCACCA ....((((((((.((((.......))))......(((((.......)))))(((((........))))).)))))))). ( -32.30) >Hin_1 1 79 - 1 AUGGGGUGGCUAAUGGGAUUCGAACCCACGACAACUGGAAUCACAAUCCAGGGCUCUACCAACUGAGCUAUAGCCACCA ....((((((((.((((.......))))......(((((.......)))))(((((........))))).)))))))). ( -32.30) >Ype_1 1 78 - 1 -UGGGGUGGCUAAUGGGACUCGAACCCACGACAACUGGAAUCACAAUCCAGGGCUCUACCAACUGAGCUAUAGCCACCA -...((((((((.((((.......))))......(((((.......)))))(((((........))))).)))))))). ( -32.30) >consensus AUGGGGUGGCUAAUGGGAUUCGAACCCACGACAACUGGAAUCACAAUCCAGGGCUCUACCAACUGAGCUAUAGCCACCA ....((((((((.((((.......))))......(((((.......)))))(((((........))))).)))))))). (-32.30 = -32.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:06:06 2006