Locus 84

Sequence ID	Eco_1
Location	3,941,994 – 3,942,114
Length	120
Max. P	0.995944

overview

Window 5

Location	3,941,994 – 3,942,114
Length	120
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	92.08
Mean single sequence MFE	-45.55
Consensus MFE	-44.40
Energy contribution	-43.52
Covariance contribution	-0.88
Combinations/Pair	1.33
Mean z-score	-2.52
Structure conservation index	0.97
SVM decision value	2.63
SVM RNA-class probability	0.995944
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3941994 120 + 1
CCAGAGCCUGAAUCAGUAUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUAUUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -45.40)
>Sfl_1 281 120 + 1
CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGUGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUACUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -45.40)
>Sty_1 281 120 + 1
CCAGAGCCUGAAUCAGCAUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAGCGCAUGUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -49.30)
>Ype_1 281 120 + 1
CCAGAGUCUGAAUCAGUUUGUGUGUUAGUGGAAGCGUCUGGAAAGUCGCACGGUACAGGGUGAUAGUCCCGUACACCAAAAUGCACAGGCUGUGAACUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((..(((..(((.((....)).)))...((((.(((.......))))))).))).)))))))))))))...((((...)))).)))).))...... ( -42.10)
>consensus
CCAGAGCCUGAAUCAGUAUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUACUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... (-44.40 = -43.52 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:59 2006