Sequence ID | Eco_1 |
---|---|
Location | 3,809,738 – 3,809,856 |
Length | 118 |
Max. P | 0.991172 |
Location | 3,809,738 – 3,809,856 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.21 |
Mean single sequence MFE | -44.93 |
Consensus MFE | -43.03 |
Energy contribution | -43.37 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.46 |
Structure conservation index | 0.96 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.953661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3809738 118 + 1 GGGUAUUGGCGCCUCGUCAGGCUUUACAGCCCGGUCAUCGC--AGUUCUAUGUGAACUCUCGAUUGCCAGGCCCAAAUGCCAAACCCGAGAUUCUCAAAGGUGGCGUAGUAUACGCUGAC ((((.(((((((((....))))......(((.(((.((((.--(((((.....)))))..)))).))).)))......)))))))))(((...)))......((((((...))))))... ( -43.90) >Sfl_1 41 118 + 1 GGGUAUUGGCGCCUCGUCAGGCUUUACAGCCCGGUCAUCGC--AGUUCUAUGUGAACUCUCGAUUGCCAGGCCCAAAUGCCAAACCCGAGAUUCUCAAAGGUGGCGUAGUAUACGCUGAC ((((.(((((((((....))))......(((.(((.((((.--(((((.....)))))..)))).))).)))......)))))))))(((...)))......((((((...))))))... ( -43.90) >Sty_1 41 119 + 1 GGGUAUCGGCGCCUCGUCAGGCUUUACAGCCUGGUCAUCGCGCAGUUCUAU-UGAACUCUCGAUUGCCAGGCCCAAAUGCCAAACCCGAGAUUCUCAAAGGUGGCGUAGUAUACGCUGAC ((((...(((((((....))))......(((((((.((((.(.(((((...-.)))))).)))).)))))))......)))..))))(((...)))......((((((...))))))... ( -47.00) >consensus GGGUAUUGGCGCCUCGUCAGGCUUUACAGCCCGGUCAUCGC__AGUUCUAUGUGAACUCUCGAUUGCCAGGCCCAAAUGCCAAACCCGAGAUUCUCAAAGGUGGCGUAGUAUACGCUGAC ((((.(((((((((....))))......(((.(((.((((...(((((.....)))))..)))).))).)))......)))))))))(((...)))......((((((...))))))... (-43.03 = -43.37 + 0.33)
Location | 3,809,738 – 3,809,856 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.21 |
Mean single sequence MFE | -47.13 |
Consensus MFE | -47.64 |
Energy contribution | -47.20 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.77 |
Structure conservation index | 1.01 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3809738 118 - 1 GUCAGCGUAUACUACGCCACCUUUGAGAAUCUCGGGUUUGGCAUUUGGGCCUGGCAAUCGAGAGUUCACAUAGAACU--GCGAUGACCGGGCUGUAAAGCCUGACGAGGCGCCAAUACCC ....(((((...))))).......(((...)))(((((((((.....(((((((..((((..(((((.....)))))--.))))..))))))).....((((....))))))))).)))) ( -46.90) >Sfl_1 41 118 - 1 GUCAGCGUAUACUACGCCACCUUUGAGAAUCUCGGGUUUGGCAUUUGGGCCUGGCAAUCGAGAGUUCACAUAGAACU--GCGAUGACCGGGCUGUAAAGCCUGACGAGGCGCCAAUACCC ....(((((...))))).......(((...)))(((((((((.....(((((((..((((..(((((.....)))))--.))))..))))))).....((((....))))))))).)))) ( -46.90) >Sty_1 41 119 - 1 GUCAGCGUAUACUACGCCACCUUUGAGAAUCUCGGGUUUGGCAUUUGGGCCUGGCAAUCGAGAGUUCA-AUAGAACUGCGCGAUGACCAGGCUGUAAAGCCUGACGAGGCGCCGAUACCC ....(((((...))))).......(((...)))(((((((((.....(((((((..((((.((((((.-...))))).).))))..))))))).....((((....))))))))).)))) ( -47.60) >consensus GUCAGCGUAUACUACGCCACCUUUGAGAAUCUCGGGUUUGGCAUUUGGGCCUGGCAAUCGAGAGUUCACAUAGAACU__GCGAUGACCGGGCUGUAAAGCCUGACGAGGCGCCAAUACCC ....(((((...))))).......(((...)))(((((((((.....(((((((..((((..(((((.....)))))...))))..))))))).....((((....))))))))).)))) (-47.64 = -47.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:33 2006