Sequence ID | Eco_1 |
---|---|
Location | 2,057,871 – 2,057,954 |
Length | 83 |
Max. P | 0.974234 |
Location | 2,057,871 – 2,057,954 |
---|---|
Length | 83 |
Sequences | 5 |
Columns | 83 |
Reading direction | forward |
Mean pairwise identity | 93.24 |
Mean single sequence MFE | -24.92 |
Consensus MFE | -24.72 |
Energy contribution | -24.12 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.19 |
Mean z-score | -1.18 |
Structure conservation index | 0.99 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2057871 83 + 1 CGUGAGCUACGCGCGCUCGUGAGUUACAUAGUGUGUUGCAUCGGAGCACUGGACAACAGAGGCAACACACUUUUUGUUGUCUA ((((.....)))).((((.(((((.((((...)))).)).)))))))..(((((((((((((........))))))))))))) ( -25.00) >Hin_1 1 79 + 1 --UGAGCUAUACGCGCUCGUGAGUUACAUAGCGUGUUGCAUCGGAUCACUGGGCAACAGAAGCAACACGACUUUUGUUGUC-- --.((((...(((((((.(((.....)))))))))).)).)).........(((((((((((........)))))))))))-- ( -25.70) >Sfl_1 1 83 + 1 CGUGAGCUACGCGCGCUCGUGAGUUACAUAGUGUGUUGCAUCGGAGCACUGGACAACAGAGGCAACACACUUUUUGUUGUCUA ((((.....)))).((((.(((((.((((...)))).)).)))))))..(((((((((((((........))))))))))))) ( -25.00) >Sty_1 1 81 + 1 --UGAGCUACGCGCGCUCGUGAGUUACAUAGUGUGUUGCAUCGGAGCACUGGACAACAGAGGCAACACACUUUUUGUUGUCUA --.((((...(((((((.(((.....)))))))))).)).)).......(((((((((((((........))))))))))))) ( -23.90) >Ype_1 1 83 + 1 CGUGAGCUACGCGCGCUCGUGAGUUACAUAGUGUGUUGCAUCGGAGCACUGGACAACAGAGGCAACACACUUUUUGUUGUCUA ((((.....)))).((((.(((((.((((...)))).)).)))))))..(((((((((((((........))))))))))))) ( -25.00) >consensus CGUGAGCUACGCGCGCUCGUGAGUUACAUAGUGUGUUGCAUCGGAGCACUGGACAACAGAGGCAACACACUUUUUGUUGUCUA ..(((((...(((((((.(((.....)))))))))).)).))).......((((((((((((........)))))))))))). (-24.72 = -24.12 + -0.60)
Location | 2,057,871 – 2,057,954 |
---|---|
Length | 83 |
Sequences | 5 |
Columns | 83 |
Reading direction | reverse |
Mean pairwise identity | 93.24 |
Mean single sequence MFE | -23.04 |
Consensus MFE | -21.86 |
Energy contribution | -21.78 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.50 |
Structure conservation index | 0.95 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2057871 83 - 1 UAGACAACAAAAAGUGUGUUGCCUCUGUUGUCCAGUGCUCCGAUGCAACACACUAUGUAACUCACGAGCGCGCGUAGCUCACG ..((..(((...((((((((((.((.((........))...)).)))))))))).)))...))..((((.......))))... ( -23.30) >Hin_1 1 79 - 1 --GACAACAAAAGUCGUGUUGCUUCUGUUGCCCAGUGAUCCGAUGCAACACGCUAUGUAACUCACGAGCGCGUAUAGCUCA-- --....(((..((.((((((((.((.((..(...)..))..)).)))))))))).))).......((((.......)))).-- ( -22.00) >Sfl_1 1 83 - 1 UAGACAACAAAAAGUGUGUUGCCUCUGUUGUCCAGUGCUCCGAUGCAACACACUAUGUAACUCACGAGCGCGCGUAGCUCACG ..((..(((...((((((((((.((.((........))...)).)))))))))).)))...))..((((.......))))... ( -23.30) >Sty_1 1 81 - 1 UAGACAACAAAAAGUGUGUUGCCUCUGUUGUCCAGUGCUCCGAUGCAACACACUAUGUAACUCACGAGCGCGCGUAGCUCA-- ..((..(((...((((((((((.((.((........))...)).)))))))))).)))...))..((((.......)))).-- ( -23.30) >Ype_1 1 83 - 1 UAGACAACAAAAAGUGUGUUGCCUCUGUUGUCCAGUGCUCCGAUGCAACACACUAUGUAACUCACGAGCGCGCGUAGCUCACG ..((..(((...((((((((((.((.((........))...)).)))))))))).)))...))..((((.......))))... ( -23.30) >consensus UAGACAACAAAAAGUGUGUUGCCUCUGUUGUCCAGUGCUCCGAUGCAACACACUAUGUAACUCACGAGCGCGCGUAGCUCACG ..((..(((...((((((((((.((.((........))...)).)))))))))).)))...))..((((.......))))... (-21.86 = -21.78 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:05 2006