Sequence ID | Eco_1 |
---|---|
Location | 3,425,241 – 3,425,401 |
Length | 160 |
Max. P | 0.999921 |
Location | 3,425,241 – 3,425,361 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -44.38 |
Consensus MFE | -43.16 |
Energy contribution | -41.88 |
Covariance contribution | -1.28 |
Combinations/Pair | 1.11 |
Mean z-score | -2.58 |
Structure conservation index | 0.97 |
SVM decision value | 4.56 |
SVM RNA-class probability | 0.999921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3425241 120 - 1 UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC ....((((..((((((.((((..((....)).))))))))))..))))(((((((((((((.......))))))........(((((((((....))))))))))))))))......... ( -45.10) >Hin_1 1 120 - 1 UGUACCAGAAGUAGAUAGCUUAACCUUUUGGAGGGCGUUUACCACGGUAUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC ....(((((((.((....))....)))))))..(((.((((((.(((((((...))).)))).)))))))))((((..(((((((((((((....))))))))).....))))..)))). ( -41.50) >Sfl_1 1 120 - 1 UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC ....((((..((((((.((((..((....)).))))))))))..))))(((((((((((((.......))))))........(((((((((....))))))))))))))))......... ( -45.10) >Sty_1 1 120 - 1 UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC ....((((..((((((.((((..((....)).))))))))))..))))(((((((((((((.......))))))........(((((((((....))))))))))))))))......... ( -45.10) >Ype_1 1 120 - 1 UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC ....((((..((((((.((((..((....)).))))))))))..))))(((((((((((((.......))))))........(((((((((....))))))))))))))))......... ( -45.10) >consensus UGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUACC .(((((.(..((((((.((((..((....)).))))))))))..))))))(((((((((((.......))))))........(((((((((....))))))))))))))........... (-43.16 = -41.88 + -1.28)
Location | 3,425,281 – 3,425,401 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -41.92 |
Consensus MFE | -43.20 |
Energy contribution | -41.92 |
Covariance contribution | -1.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.32 |
Structure conservation index | 1.03 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3425281 120 - 1 GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG ((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -42.50) >Hin_1 41 120 - 1 GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGUACCAGAAGUAGAUAGCUUAACCUUUUGGAGGGCGUUUACCACGGUAUGAUUCAUGACUGGGGUGAAGUCGUAACAAG ((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -39.60) >Sfl_1 41 120 - 1 GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG ((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -42.50) >Sty_1 41 120 - 1 GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG ((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -42.50) >Ype_1 41 120 - 1 GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG ((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ ( -42.50) >consensus GGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAG ((((..((....))..)))).((((.((.(((..((((((..((((.(..((((((.((((..((....)).))))))))))..)))))..))))))..)))))))))............ (-43.20 = -41.92 + -1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:15 2006