Sequence ID | Eco_1 |
---|---|
Location | 3,424,979 – 3,425,059 |
Length | 80 |
Max. P | 0.677572 |
Location | 3,424,979 – 3,425,059 |
---|---|
Length | 80 |
Sequences | 6 |
Columns | 80 |
Reading direction | forward |
Mean pairwise identity | 86.00 |
Mean single sequence MFE | -27.88 |
Consensus MFE | -24.32 |
Energy contribution | -24.85 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.18 |
Mean z-score | -1.59 |
Structure conservation index | 0.87 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677572 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3424979 80 + 1 AUGGUGGAGCUAUGCGGGAUCGAACCGCAGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAUAGCCCCAUA ...((((.(((((((((.......))))......(((((.......))))).((((........)))).))))).)))). ( -31.20) >Hin_1 1 78 + 1 -UGGUGGAGAUAAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAGGCAGGCGCUCUCCCAGCUGAGCUAUAUCCCCAU- -(((.((((...(((((.......)))))...)))).((.(((...))).))((((........)))).......))).- ( -28.20) >Lpn_1 1 78 + 1 AUGGUGGAGCUAGGCGGGAUCGAACCGCCGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAACCCCA-- .(((..((((..(((((.......))))).....(((((((...))))))).))))..))).................-- ( -29.20) >Sfl_1 1 64 + 1 -------------GCGGGAUCGAACCGCUGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCC--- -------------((((.......))))......(((((((...))))))).((((........)))).........--- ( -18.60) >Sty_1 1 79 + 1 -UGGUGGAGCUAAGCGGGAUCGAACCGCUGACCUCUUGCAUGCCAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCCAUA -..((((.(((((((((.......))))).....(((((((...))))))).((((........))))..)))).)))). ( -29.50) >Ype_1 1 80 + 1 AUGGUGGAGCUAAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAGGCAGGCGCUCUCCCAGCUGAGCUAUAGCCCCAUA ...((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))). ( -30.60) >consensus _UGGUGGAGCUAAGCGGGAUCGAACCGCUGACCUCCUGCAUGCAAUGCAAGCGCUCUCCCAGCUGAGCUAUAGCCCCAU_ ...((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))). (-24.32 = -24.85 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:12 2006