Sequence ID | Eco_1 |
---|---|
Location | 226,808 – 226,928 |
Length | 120 |
Max. P | 0.684098 |
Location | 226,808 – 226,928 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -39.80 |
Consensus MFE | -39.80 |
Energy contribution | -39.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 1.00 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684098 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 226808 120 - 1 ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC (((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... ( -39.80) >Sfl_1 1063 120 - 1 ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC (((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... ( -39.80) >Sty_1 1065 120 - 1 ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC (((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... ( -39.80) >Ype_1 1062 120 - 1 ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC (((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... ( -39.80) >consensus ACCUCUCUCGGAUUGUAUAUCAGCCCAUACACGGCGCAAGCCUGUAUCUUUCAGCUAACGUUGCUGUCUGGCCUGGCACUUUCUUGGUCUAGCCAAGUGCAGCCGACCUGGUGGUCUCAC (((.((.((((.((((((..((((..(((((.(((....)))))))).....(((....)))))))..((((..(((.(......))))..)))).))))))))))...)).)))..... (-39.80 = -39.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:57 2006