Sequence ID | Eco_1 |
---|---|
Location | 3,421,600 – 3,421,680 |
Length | 80 |
Max. P | 0.996944 |
Location | 3,421,600 – 3,421,680 |
---|---|
Length | 80 |
Sequences | 4 |
Columns | 80 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -34.07 |
Consensus MFE | -34.83 |
Energy contribution | -34.08 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.08 |
Mean z-score | -4.70 |
Structure conservation index | 1.02 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3421600 80 + 1 AGUGGUGCUGAUACCCAGAGUCGAACUGGGGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCCAUAUCAGCAC ....((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) ( -33.40) >Sfl_1 1 80 + 1 AGUGGUGCUGAUAGGCAGAUUCGAACUGCCGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCUAUAUCAGCAC ....((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) ( -34.30) >Sty_1 1 80 + 1 AGUGGUGCUGAUAGGCAGAUUCGAACUGCCGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCUAUAUCAGCAC ....((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) ( -34.30) >Ype_1 1 78 + 1 --UGGUGCUGAUAGGCAGAUUCGAACUGCCGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCUAUAUCAGCAC --..((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) ( -34.30) >consensus AGUGGUGCUGAUAGGCAGAUUCGAACUGCCGACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCUAUAUCAGCAC ....((((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))))) (-34.83 = -34.08 + -0.75)
Location | 3,421,600 – 3,421,680 |
---|---|
Length | 80 |
Sequences | 4 |
Columns | 80 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -35.20 |
Consensus MFE | -35.95 |
Energy contribution | -35.20 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.08 |
Mean z-score | -3.82 |
Structure conservation index | 1.02 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3421600 80 - 1 GUGCUGAUAUGGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCCCCAGUUCGACUCUGGGUAUCAGCACCACU (((((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))))).... ( -34.60) >Sfl_1 1 80 - 1 GUGCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCACU (((((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))))).... ( -35.40) >Sty_1 1 80 - 1 GUGCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCACU (((((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))))).... ( -35.40) >Ype_1 1 78 - 1 GUGCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCA-- (((((((((..((((........)))).((((((.....)))))).....(((((.......))))))))))))))..-- ( -35.40) >consensus GUGCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCACU (((((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))))).... (-35.95 = -35.20 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:05:03 2006