Sequence ID | Eco_1 |
---|---|
Location | 3,376,733 – 3,376,850 |
Length | 117 |
Max. P | 0.500000 |
Location | 3,376,733 – 3,376,850 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -35.13 |
Consensus MFE | -28.40 |
Energy contribution | -29.40 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.05 |
Mean z-score | -1.96 |
Structure conservation index | 0.81 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>Eco_1 3376733 117 - 1 ACUUCUCUAUAAUCCUGCGACCCCACGUUACAAGAAAGUUUUUUUCCCAAAACUUUUUGU-GUGCUGGCAUAGGCUAUUCGAAGGGGUAGGUUUGCCGGACU--UUGUCGUGUGAACCUC ............((.((((((.......((((((((((((((......)))))))))).)-)))((((((.((.((((((....)))))).))))))))...--..)))))).))..... ( -32.90) >Sfl_1 40 117 - 1 ACUUCUCUAUAAUCCUGCGACCCCACGUUACAAGAAAGUUUUUUUCCCAAAACUUUUUGU-GUGCUGGCAUAGGCUAUUCGAAGGGGUAGGUUUGCCGGACU--UUGUCGUGUGAACCUC ............((.((((((.......((((((((((((((......)))))))))).)-)))((((((.((.((((((....)))))).))))))))...--..)))))).))..... ( -32.90) >Ype_1 41 120 - 1 ACUUCUCUAUAAUCUUGCGACCCCACGUUACAACAAAGUUUUUUUCCCAAAAACUUUGAUAGUGCCAGCAUUGGCUAUUCGAAGGGGUAGGUUUGCUGGACUGAUGGUCGUGUGAGCCUC ............((.(((((((...........((((((((((.....)))))))))).((((.((((((..(.((((((....)))))).).))))))))))..))))))).))..... ( -39.60) >consensus ACUUCUCUAUAAUCCUGCGACCCCACGUUACAAGAAAGUUUUUUUCCCAAAACUUUUUGU_GUGCUGGCAUAGGCUAUUCGAAGGGGUAGGUUUGCCGGACU__UUGUCGUGUGAACCUC ............((.((((((..(((...((((.((((((((......)))))))))))).)))((((((.((.((((((....)))))).)))))))).......)))))).))..... (-28.40 = -29.40 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:59 2006