Sequence ID | Eco_1 |
---|---|
Location | 3,320,058 – 3,320,190 |
Length | 132 |
Max. P | 0.990567 |
Location | 3,320,058 – 3,320,177 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.66 |
Mean single sequence MFE | -45.87 |
Consensus MFE | -45.19 |
Energy contribution | -45.63 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -4.89 |
Structure conservation index | 0.99 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3320058 119 + 1 AAAAAAGACGCUUUUCAGCGUCUCUUUUCUGGAAU-UUGGUACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCAAGGUAGCGUGUCUACCAAUUCCACCACCU ((((.(((((((....))))))).)))).((((((-(.......(((((((((.......)))))..((((....)))).......))))..(((((.....))))))))))))...... ( -43.60) >Sfl_1 1 119 + 1 AAAAGAGACGCUUUUCAGCGUCUCUUUUCUGGAAU-UUGGUACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCAAGGUAGCGUGUCUACCAAUUCCACCACCU ((((((((((((....)))))))))))).((((((-(.......(((((((((.......)))))..((((....)))).......))))..(((((.....))))))))))))...... ( -49.80) >Sty_1 1 120 + 1 AAAAAAGACGCUUUUCAGCGUCUUUCUUUCGGAAUAUUGGUACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCAAGGUAGCGUGUCUACCAAUUCCACCACCU ...(((((((((....))))))))).....(((((.........(((((((((.......)))))..((((....)))).......))))..(((((.....))))).)))))....... ( -44.20) >consensus AAAAAAGACGCUUUUCAGCGUCUCUUUUCUGGAAU_UUGGUACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCAAGGUAGCGUGUCUACCAAUUCCACCACCU ((((((((((((....))))))))))))..(((((.........(((((((((.......)))))..((((....)))).......))))..(((((.....))))).)))))....... (-45.19 = -45.63 + 0.45)
Location | 3,320,058 – 3,320,177 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.66 |
Mean single sequence MFE | -50.20 |
Consensus MFE | -50.48 |
Energy contribution | -49.60 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -4.43 |
Structure conservation index | 1.01 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3320058 119 - 1 AGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCAA-AUUCCAGAAAAGAGACGCUGAAAAGCGUCUUUUUU ......(((((((((((.....((((((.......))))))((((....))))..(((((.......)))))......)))).)-)))))).((((((((((((....)))))))))))) ( -49.90) >Sfl_1 1 119 - 1 AGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCAA-AUUCCAGAAAAGAGACGCUGAAAAGCGUCUCUUUU ......(((((((((((.....((((((.......))))))((((....))))..(((((.......)))))......)))).)-)))))).((((((((((((....)))))))))))) ( -52.50) >Sty_1 1 120 - 1 AGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCAAUAUUCCGAAAGAAAGACGCUGAAAAGCGUCUUUUUU ......(((((((((((.....((((((.......))))))((((....))))..(((((.......)))))......)))))..)))))).((((((((((((....)))))))))))) ( -48.20) >consensus AGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCAA_AUUCCAGAAAAGAGACGCUGAAAAGCGUCUUUUUU ......(((((((((((.....((((((.......))))))((((....))))..(((((.......)))))......)))))..)))))).((((((((((((....)))))))))))) (-50.48 = -49.60 + -0.88)
Location | 3,320,071 – 3,320,190 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.21 |
Mean single sequence MFE | -37.03 |
Consensus MFE | -35.07 |
Energy contribution | -35.41 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.95 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3320071 119 + 1 UUCAGCGUCUCUUUUCUGGAAU-UUGGUACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCAAGGUAGCGUGUCUACCAAUUCCACCACCUCGGCACGGAUACU .((.(.(((.......((((((-(.......(((((((((.......)))))..((((....)))).......))))..(((((.....)))))))))))).......))).).)).... ( -36.94) >Sfl_1 14 119 + 1 UUCAGCGUCUCUUUUCUGGAAU-UUGGUACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCAAGGUAGCGUGUCUACCAAUUCCACCACCUCGGCACGGAUACU .((.(.(((.......((((((-(.......(((((((((.......)))))..((((....)))).......))))..(((((.....)))))))))))).......))).).)).... ( -36.94) >Sty_1 14 120 + 1 UUCAGCGUCUUUCUUUCGGAAUAUUGGUACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCAAGGUAGCGUGUCUACCAAUUCCACCACCUCGGCACGGAUACU .....................((((.((.(((((((((((.......)))))..((((....)))).............(((((.....)))))..........)))))).)).)))).. ( -37.20) >consensus UUCAGCGUCUCUUUUCUGGAAU_UUGGUACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCAAGGUAGCGUGUCUACCAAUUCCACCACCUCGGCACGGAUACU .((.(.(((.......((((((.........(((((((((.......)))))..((((....)))).......))))..(((((.....))))).)))))).......))).).)).... (-35.07 = -35.41 + 0.33)
Location | 3,320,071 – 3,320,190 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.21 |
Mean single sequence MFE | -43.90 |
Consensus MFE | -42.50 |
Energy contribution | -42.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.09 |
Structure conservation index | 0.97 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3320071 119 - 1 AGUAUCCGUGCCGAGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCAA-AUUCCAGAAAAGAGACGCUGAA ((..((.((((((((((((.((....(((((.....)))))(((((.(.((((.((((....)))))))).).))))).))))).)))))))))...-..((.......))))..))... ( -42.90) >Sfl_1 14 119 - 1 AGUAUCCGUGCCGAGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCAA-AUUCCAGAAAAGAGACGCUGAA ((..((.((((((((((((.((....(((((.....)))))(((((.(.((((.((((....)))))))).).))))).))))).)))))))))...-..((.......))))..))... ( -42.90) >Sty_1 14 120 - 1 AGUAUCCGUGCCGAGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCAAUAUUCCGAAAGAAAGACGCUGAA ((..((.((((((((((((.((....(((((.....)))))(((((.(.((((.((((....)))))))).).))))).))))).)))))))))........(....)...))..))... ( -45.90) >consensus AGUAUCCGUGCCGAGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCAA_AUUCCAGAAAAGAGACGCUGAA .......((((((((((((.((....(((((.....)))))(((((.(.((((.((((....)))))))).).))))).))))).))))))))).......................... (-42.50 = -42.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:58 2006