Sequence ID | Eco_1 |
---|---|
Location | 3,316,235 – 3,316,316 |
Length | 81 |
Max. P | 0.500000 |
Location | 3,316,235 – 3,316,316 |
---|---|
Length | 81 |
Sequences | 5 |
Columns | 81 |
Reading direction | reverse |
Mean pairwise identity | 97.28 |
Mean single sequence MFE | -33.92 |
Consensus MFE | -32.40 |
Energy contribution | -32.40 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.09 |
Structure conservation index | 0.96 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>Eco_1 3316235 81 - 1 CAGGCGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA ..((.((((((..((((.((...)).)))).(((((.......))))).....(((((.......)))))))))))..)). ( -33.30) >Hin_1 1 81 - 1 CAGACGCGGGGUGGAGCAGCUUGGUAGCUCGUCGGGCUCAUAACCCGAAGGCCGUCGGUUCAAAUCCGGCCCCCGCAACCA .....((((((.((.(.((((....))))).(((((.......)))))...))(((((.......)))))))))))..... ( -32.50) >Sfl_1 1 81 - 1 CAGGCGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA ...(((.((((((((..((((.((..(((..(((((.......))))).)))..))))))....))).))))))))..... ( -34.10) >Sty_1 1 81 - 1 CAGGCGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA ...(((.((((((((..((((.((..(((..(((((.......))))).)))..))))))....))).))))))))..... ( -34.10) >Ype_1 1 81 - 1 CGGACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA .((..((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..))))))..)). ( -35.60) >consensus CAGGCGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA .....((((((..((((.((...)).)))).(((((.......))))).....(((((.......)))))))))))..... (-32.40 = -32.40 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:55 2006