Sequence ID | Eco_1 |
---|---|
Location | 3,305,942 – 3,306,062 |
Length | 120 |
Max. P | 0.904044 |
Location | 3,305,942 – 3,306,062 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -34.17 |
Consensus MFE | -31.92 |
Energy contribution | -31.70 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.28 |
Structure conservation index | 0.93 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.904044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3305942 120 - 1 CUGACGUACACAUCAGCCCGUAAUCUUUUUUGAUUGCCAUCACCUUAACGGGUGAGGGCGUUGUUGUUCGUUAAUACACCUACUUUGAGCCGGUUCACACUUUUCAAUGAAAAUUGCUGA .(((((.(((((...((((((((((......))))))..((((((....))))))))))..)).))).)))))............((((....)))).......((((....)))).... ( -33.00) >Sfl_1 9 120 - 1 CUGACGUACACAUCAGCCCGUAAUCUUUUUUGAUUGCCAUCACCUUAACGGGUGAGGGCGUUGUUGUUCGUUAAUACACCUACUUUGAGCCGGUUCACACUUUUCAAUGAAAAUUGCUGA .(((((.(((((...((((((((((......))))))..((((((....))))))))))..)).))).)))))............((((....)))).......((((....)))).... ( -33.00) >Sty_1 60 119 - 1 CUGACGAACAUAUCAGCCCGUAAUC-UUUUUGAUUGCCAUCACCUUCGCGGGUGAGGGCGUUGUUGUUCGUUAAUACACCUACUUUGAGCCGGUUCACACUUUUCAAUGAAAAUUGCAGA .(((((((((.....((((((((((-.....))))))..((((((....)))))))))).....)))))))))............((((....)))).......((((....)))).... ( -36.50) >consensus CUGACGUACACAUCAGCCCGUAAUCUUUUUUGAUUGCCAUCACCUUAACGGGUGAGGGCGUUGUUGUUCGUUAAUACACCUACUUUGAGCCGGUUCACACUUUUCAAUGAAAAUUGCUGA .(((((.(((((...((((((((((......))))))..((((((....))))))))))..)).))).)))))............((((....)))).......((((....)))).... (-31.92 = -31.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:51 2006