Sequence ID | Eco_1 |
---|---|
Location | 3,213,590 – 3,213,710 |
Length | 120 |
Max. P | 0.985919 |
Location | 3,213,590 – 3,213,710 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -42.33 |
Consensus MFE | -38.04 |
Energy contribution | -38.27 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.38 |
Structure conservation index | 0.90 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3213590 120 + 1 ACACGGAGUUACUUUAUAAUCCGCUACCAUGGCCCCUUAGCUCAGUGGUUAGAGCAGGCGACUCAUAAUCGCUUGGUCGCUGGUUCAAGUCCAGCAGGGGCCACCAGAUAUAGCAAAGGC ....(((............)))((((...(((((((((((((....)))))((.(((((((.......))))))).))(((((.......))))))))))))).......))))...... ( -43.10) >Sfl_1 67 120 + 1 GCACGGAGUUACUUUAUAAUCCGCUACCAUGGCCCCUUAGCUCAGUGGUUAGAGCAGGCGACUCAUAAUCGCUUGGUCGCUGGUUCAAGUCCAGCAGGGGCCACCAGAUAUAGCAAAGGC ((.((((............))))......(((((((((((((....)))))((.(((((((.......))))))).))(((((.......))))))))))))).........))...... ( -44.20) >Sty_1 67 106 + 1 GCGUAAAGUUACAUUAUAAUCCACCGCCACGGCCCCUUAGCUCAGUGGUUAGAGCAGGCGACUCAUAAUCGCUUGGUCGCUGGUUCAAGUCCAGCAGGGGCCACCA-------------- (((....((((.....))))....)))...((((((((((((....)))))((.(((((((.......))))))).))(((((.......))))))))))))....-------------- ( -39.70) >consensus GCACGGAGUUACUUUAUAAUCCGCUACCAUGGCCCCUUAGCUCAGUGGUUAGAGCAGGCGACUCAUAAUCGCUUGGUCGCUGGUUCAAGUCCAGCAGGGGCCACCAGAUAUAGCAAAGGC ...((((............)))).......((((((((((((....)))))((.(((((((.......))))))).))(((((.......)))))))))))).................. (-38.04 = -38.27 + 0.22)
Location | 3,213,590 – 3,213,710 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -42.17 |
Consensus MFE | -41.72 |
Energy contribution | -40.40 |
Covariance contribution | -1.32 |
Combinations/Pair | 1.16 |
Mean z-score | -1.90 |
Structure conservation index | 0.99 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3213590 120 - 1 GCCUUUGCUAUAUCUGGUGGCCCCUGCUGGACUUGAACCAGCGACCAAGCGAUUAUGAGUCGCCUGCUCUAACCACUGAGCUAAGGGGCCAUGGUAGCGGAUUAUAAAGUAACUCCGUGU ......(((((.....((((((((((((((.......)))))......(((((.....)))))..((((........))))..))))))))).)))))(((((((...)))).))).... ( -44.60) >Sfl_1 67 120 - 1 GCCUUUGCUAUAUCUGGUGGCCCCUGCUGGACUUGAACCAGCGACCAAGCGAUUAUGAGUCGCCUGCUCUAACCACUGAGCUAAGGGGCCAUGGUAGCGGAUUAUAAAGUAACUCCGUGC ......(((((.....((((((((((((((.......)))))......(((((.....)))))..((((........))))..))))))))).)))))(((((((...)))).))).... ( -44.60) >Sty_1 67 106 - 1 --------------UGGUGGCCCCUGCUGGACUUGAACCAGCGACCAAGCGAUUAUGAGUCGCCUGCUCUAACCACUGAGCUAAGGGGCCGUGGCGGUGGAUUAUAAUGUAACUUUACGC --------------....((((((((((((.......)))))......(((((.....)))))..((((........))))..)))))))...(((..((.((((...))))))...))) ( -37.30) >consensus GCCUUUGCUAUAUCUGGUGGCCCCUGCUGGACUUGAACCAGCGACCAAGCGAUUAUGAGUCGCCUGCUCUAACCACUGAGCUAAGGGGCCAUGGUAGCGGAUUAUAAAGUAACUCCGUGC ................((((((((((((((.......)))))......(((((.....)))))..((((........))))..)))))))))....(((((((((...)))).))))).. (-41.72 = -40.40 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:50 2006