Sequence ID | Eco_1 |
---|---|
Location | 3,108,349 – 3,108,464 |
Length | 115 |
Max. P | 0.987023 |
Location | 3,108,349 – 3,108,464 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 96.52 |
Mean single sequence MFE | -47.30 |
Consensus MFE | -45.31 |
Energy contribution | -44.87 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.14 |
Structure conservation index | 0.96 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3108349 115 + 1 UUGACGAGACGAGGCGAAUCAGGUUUAAUGCGCCCCGUUGCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA .......((((.((((.((........)).)))).))))(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).... ( -45.20) >Sfl_1 1 115 + 1 UUGACGAGACGAGGCGAAUCAGGUUUAAUGCGCCCCGUUGCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA .......((((.((((.((........)).)))).))))(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).... ( -45.20) >Sty_1 1 115 + 1 UUGACGAAGCGAGGCGAUUACGGUUUAAUGCGCCUCGUUGCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA .......(((((((((((((.....)))).)))))))))(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).... ( -51.50) >consensus UUGACGAGACGAGGCGAAUCAGGUUUAAUGCGCCCCGUUGCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA .......((((.((((..............)))).))))(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).... (-45.31 = -44.87 + -0.44)
Location | 3,108,349 – 3,108,464 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 96.52 |
Mean single sequence MFE | -48.30 |
Consensus MFE | -45.75 |
Energy contribution | -46.53 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -3.65 |
Structure conservation index | 0.95 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.987023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3108349 115 - 1 UGGUGCCCGGACUCGGAAUCGAACCAAGGACACGGGGAUUUUCAAUCCCCUGCUCUACCGACUGAGCUAUCCGGGCAACGGGGCGCAUUAAACCUGAUUCGCCUCGUCUCGUCAA ...(((((((((((((..(((.....((..((.((((((.....))))))))..))..))))))))...))))))))((((((((.((((....)))).))))))))........ ( -48.60) >Sfl_1 1 115 - 1 UGGUGCCCGGACUCGGAAUCGAACCAAGGACACGGGGAUUUUCAAUCCCCUGCUCUACCGACUGAGCUAUCCGGGCAACGGGGCGCAUUAAACCUGAUUCGCCUCGUCUCGUCAA ...(((((((((((((..(((.....((..((.((((((.....))))))))..))..))))))))...))))))))((((((((.((((....)))).))))))))........ ( -48.60) >Sty_1 1 115 - 1 UGGUGCCCGGACUCGGAAUCGAACCAAGGACACGGGGAUUUUCAAUCCCCUGCUCUACCGACUGAGCUAUCCGGGCAACGAGGCGCAUUAAACCGUAAUCGCCUCGCUUCGUCAA ...(((((((((((((..(((.....((..((.((((((.....))))))))..))..))))))))...)))))))).(((((((.((((.....)))))))))))......... ( -47.70) >consensus UGGUGCCCGGACUCGGAAUCGAACCAAGGACACGGGGAUUUUCAAUCCCCUGCUCUACCGACUGAGCUAUCCGGGCAACGGGGCGCAUUAAACCUGAUUCGCCUCGUCUCGUCAA ...(((((((((((((..(((.....((..((.((((((.....))))))))..))..))))))))...)))))))).(((((((.((((....)))).)))))))......... (-45.75 = -46.53 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:48 2006