Locus 57

Sequence ID	Eco_1
Location	2,945,627 – 2,945,708
Length	81
Max. P	0.991681

overview

Window 3

Location	2,945,627 – 2,945,708
Length	81
Sequences	6
Columns	82
Reading direction	forward
Mean pairwise identity	95.33
Mean single sequence MFE	-32.42
Consensus MFE	-32.48
Energy contribution	-31.98
Covariance contribution	-0.50
Combinations/Pair	1.09
Mean z-score	-1.26
Structure conservation index	1.00
SVM decision value	2.28
SVM RNA-class probability	0.991681
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 2945627 81 + 1
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCAAU-
...((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..)))))).......- ( -32.90)
>Hin_1 1 81 + 1
GACGCGGGGUGGAGCAGCUUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUUGGUUCAAAUCCAGCCCCCGCAACCAAU-
...((((((..((.(((((....))))..(((((.......))))).).))(((((.......))))))))))).......- ( -31.40)
>Lpn_1 1 81 + 1
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUAGGUUCAAAUCCUGCCCCCGCUACCAAU-
...((((((.(((..((((((...(((..(((((.......))))).)))..))))))....)))...)))))).......- ( -31.50)
>Sfl_1 1 77 + 1
--CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA---
--.((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..)))))).....--- ( -32.90)
>Sty_1 1 82 + 1
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCAACU
...((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..))))))........ ( -32.90)
>Ype_1 1 81 + 1
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCAAU-
...((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..)))))).......- ( -32.90)
>consensus
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCAAU_
...((((((..((((.((...)).)))).(((((.......))))).....(((((.......)))))))))))........ (-32.48 = -31.98 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:39 2006