Locus 56

Sequence ID Eco_1
Location 2,945,517 – 2,945,598
Length 81
Max. P 0.993220
window182

overview

Window 2

Location 2,945,517 – 2,945,598
Length 81
Sequences 6
Columns 81
Reading direction forward
Mean pairwise identity 96.05
Mean single sequence MFE -32.42
Consensus MFE -32.48
Energy contribution -31.98
Covariance contribution -0.50
Combinations/Pair 1.09
Mean z-score -1.29
Structure conservation index 1.00
SVM decision value 2.38
SVM RNA-class probability 0.993220
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 2945517 81 + 1
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCAAU
...((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..))))))....... ( -32.90)
>Hin_1 1 81 + 1
GACGCGGGGUGGAGCAGCUUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUUGGUUCAAAUCCAGCCCCCGCAACCAAU
...((((((..((.(((((....))))..(((((.......))))).).))(((((.......)))))))))))....... ( -31.40)
>Lpn_1 1 81 + 1
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUAGGUUCAAAUCCUGCCCCCGCUACCAAU
...((((((.(((..((((((...(((..(((((.......))))).)))..))))))....)))...))))))....... ( -31.50)
>Sfl_1 1 77 + 1
--CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA--
--.((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..)))))).....-- ( -32.90)
>Sty_1 1 81 + 1
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCAAU
...((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..))))))....... ( -32.90)
>Ype_1 1 81 + 1
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCAAU
...((((((((((..((((.((..(((..(((((.......))))).)))..))))))....))))..))))))....... ( -32.90)
>consensus
GACGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCAAU
...((((((..((((.((...)).)))).(((((.......))))).....(((((.......)))))))))))....... (-32.48 = -31.98 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:38 2006