| Sequence ID | Eco_1 |
|---|---|
| Location | 2,817,209 – 2,817,329 |
| Length | 120 |
| Max. P | 0.930609 |
| Location | 2,817,209 – 2,817,329 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -20.75 |
| Energy contribution | -20.75 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.930609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2817209 120 + 1 UAUCCCGGCAUUAUCCAUCAUAUAACGCCAAAAAGUAAGCAAUGACAAACACAUUACAUCUAAGCAGUCAUGGCAUUACAUUCUGUUAAACCUAAGUUUAGCCGAUAUACACAACUUCAA ......(((.((((.......)))).))).....((((((.(((((....................))))).)).))))..((.(((((((....))))))).))............... ( -20.05) >Sfl_1 41 120 + 1 UAUCCCGGCAUUAUCCAUCAUAUAACGCCAAAAAGUAAGCAAUGACAAACACAUUACAUGUAAGCAGUCAUGGCAUUACAUUCUGUUAAACCUAAGUUUAGCCGAUAUACACAACUUCAA ......(((.((((.......)))).))).....((((((.(((((....((((...)))).....))))).)).))))..((.(((((((....))))))).))............... ( -21.40) >Sty_1 41 120 + 1 UAUCCCGGCAUUAUCCAUCAUAUAACGCCAAAAAGUAAGCGAUGACAAACACCUUAGGUGUAAGCAGUCAUGGCAUUACAUUCUGUUAAACCUAAGUUUAGCCGAUAUACAAAACUUCAA ......(((.((((.......)))).))).....((((((.(((((..(((((...))))).....))))).)).))))..((.(((((((....))))))).))............... ( -27.60) >consensus UAUCCCGGCAUUAUCCAUCAUAUAACGCCAAAAAGUAAGCAAUGACAAACACAUUACAUGUAAGCAGUCAUGGCAUUACAUUCUGUUAAACCUAAGUUUAGCCGAUAUACACAACUUCAA ......(((.((((.......)))).))).....((((((.(((((....................))))).)).))))..((.(((((((....))))))).))............... (-20.75 = -20.75 + 0.00)
| Location | 2,817,209 – 2,817,329 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -28.25 |
| Energy contribution | -28.37 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2817209 120 - 1 UUGAAGUUGUGUAUAUCGGCUAAACUUAGGUUUAACAGAAUGUAAUGCCAUGACUGCUUAGAUGUAAUGUGUUUGUCAUUGCUUACUUUUUGGCGUUAUAUGAUGGAUAAUGCCGGGAUA ...............((((((((((....))))).((..(((((((((((...((....))..((((((.......))))))........)))))))))))..))......))))).... ( -28.80) >Sfl_1 41 120 - 1 UUGAAGUUGUGUAUAUCGGCUAAACUUAGGUUUAACAGAAUGUAAUGCCAUGACUGCUUACAUGUAAUGUGUUUGUCAUUGCUUACUUUUUGGCGUUAUAUGAUGGAUAAUGCCGGGAUA ...............((((((((((....))))).((..(((((((((((((((....(((((...)))))...))))............)))))))))))..))......))))).... ( -29.20) >Sty_1 41 120 - 1 UUGAAGUUUUGUAUAUCGGCUAAACUUAGGUUUAACAGAAUGUAAUGCCAUGACUGCUUACACCUAAGGUGUUUGUCAUCGCUUACUUUUUGGCGUUAUAUGAUGGAUAAUGCCGGGAUA ...............(((((....(((((((.((((((.(((......)))..))).))).))))))).((((..((((((((........))))....))))..))))..))))).... ( -32.90) >consensus UUGAAGUUGUGUAUAUCGGCUAAACUUAGGUUUAACAGAAUGUAAUGCCAUGACUGCUUACAUGUAAUGUGUUUGUCAUUGCUUACUUUUUGGCGUUAUAUGAUGGAUAAUGCCGGGAUA ...............((((((((((....))))).((..(((((((((((((((.....((((.....))))..))))............)))))))))))..))......))))).... (-28.25 = -28.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:32 2006