Sequence ID | Eco_1 |
---|---|
Location | 2,816,219 – 2,816,299 |
Length | 80 |
Max. P | 0.998689 |
Location | 2,816,219 – 2,816,299 |
---|---|
Length | 80 |
Sequences | 4 |
Columns | 80 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -33.92 |
Consensus MFE | -34.42 |
Energy contribution | -33.30 |
Covariance contribution | -1.12 |
Combinations/Pair | 1.17 |
Mean z-score | -3.10 |
Structure conservation index | 1.01 |
SVM decision value | 3.19 |
SVM RNA-class probability | 0.998689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2816219 80 + 1 AUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCAU ...((((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))))) ( -34.90) >Hin_1 1 79 + 1 AUGGCGCACCCGAGAGGAUUCGAACCUCUGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGGUGCA- .....((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))).- ( -32.70) >Sty_1 1 80 + 1 AUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCAU ...((((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))))) ( -34.90) >Ype_1 1 80 + 1 AUGGUGCACCCAGGAAGAUUCGAACUUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUAUGGGUGCAU ...((((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))))) ( -33.20) >consensus AUGGUGCACCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCAU ...((((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))))) (-34.42 = -33.30 + -1.12)
Location | 2,816,219 – 2,816,299 |
---|---|
Length | 80 |
Sequences | 4 |
Columns | 80 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -32.29 |
Energy contribution | -30.48 |
Covariance contribution | -1.81 |
Combinations/Pair | 1.20 |
Mean z-score | -2.11 |
Structure conservation index | 1.06 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2816219 80 - 1 AUGCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAU .((((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))).... ( -31.10) >Hin_1 1 79 - 1 -UGCACCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCAGAGGUUCGAAUCCUCUCGGGUGCGCCAU -.(((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))..... ( -29.80) >Sty_1 1 80 - 1 AUGCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAU .((((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))).... ( -31.10) >Ype_1 1 80 - 1 AUGCACCCAUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAAGUUCGAAUCUUCCUGGGUGCACCAU .((((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))).... ( -30.20) >consensus AUGCACCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAU .((((((((((((...))))....((.(.(((((.......))))).).))(((((.......))))))))))))).... (-32.29 = -30.48 + -1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:28 2006