Locus 51

Sequence ID	Eco_1
Location	2,816,078 – 2,816,159
Length	81
Max. P	0.998350

overview

Window 7

Location	2,816,078 – 2,816,159
Length	81
Sequences	5
Columns	98
Reading direction	forward
Mean pairwise identity	83.32
Mean single sequence MFE	-35.16
Consensus MFE	-34.20
Energy contribution	-32.76
Covariance contribution	-1.44
Combinations/Pair	1.19
Mean z-score	-2.69
Structure conservation index	0.97
SVM decision value	3.07
SVM RNA-class probability	0.998350
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 2816078 81 + 1
-----------------AUAUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCA
-----------------......(((((((((((((.......)))))((..(((((((.....)))))))..))...............)))))))) ( -33.30)
>Hin_1 1 79 + 1
-------------------AUGGCGCACCCGAGAGGAUUCGAACCUCUGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGGUGCA
-------------------.....((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))). ( -32.70)
>Sfl_1 1 98 + 1
AAGCCGUAUCAAGUAAGAGAUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCA
..(((((.((......)).)))))((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))). ( -39.10)
>Sty_1 1 98 + 1
AAGCCGUAUCAGGUAAGAGAUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCA
..(((((.((......)).)))))((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))). ( -39.10)
>Ype_1 1 81 + 1
-----------------AUAUGGUGCACCCAGGAAGAUUCGAACUUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUAUGGGUGCA
-----------------......(((((((((((((.......)))))((..(((((((.....)))))))..))...............)))))))) ( -31.60)
>consensus
_________________AGAUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGCCGAGUACUCUAUCCAGCUGAGCUACGGAUGCA
........................((((((((((((.......)))))((..(((((((.....)))))))..))...............))))))). (-34.20 = -32.76 +  -1.44)

alignment

secondary structure

dotplot

Window 8

Location	2,816,078 – 2,816,159
Length	81
Sequences	5
Columns	98
Reading direction	reverse
Mean pairwise identity	83.32
Mean single sequence MFE	-30.74
Consensus MFE	-31.96
Energy contribution	-30.36
Covariance contribution	-1.60
Combinations/Pair	1.20
Mean z-score	-1.48
Structure conservation index	1.04
SVM decision value	0.85
SVM RNA-class probability	0.865735
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 2816078 81 - 1
UGCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAUAU-----------------
((((((((((((...))))....((.(.(((((.......))))).).))(((((.......)))))))))))))......----------------- ( -30.80)
>Hin_1 1 79 - 1
UGCACCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCAGAGGUUCGAAUCCUCUCGGGUGCGCCAU-------------------
.(((((((((((...))))....((.(.(((((.......))))).).))(((((.......)))))))))))).....------------------- ( -29.80)
>Sfl_1 1 98 - 1
UGCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAUCUCUUACUUGAUACGGCUU
((((((((((((...))))....((.(.(((((.......))))).).))(((((.......)))))))))))))(((((........)))..))... ( -31.60)
>Sty_1 1 98 - 1
UGCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAUCUCUUACCUGAUACGGCUU
((((((((((((...))))....((.(.(((((.......))))).).))(((((.......)))))))))))))(((((........)))..))... ( -31.60)
>Ype_1 1 81 - 1
UGCACCCAUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAAGUUCGAAUCUUCCUGGGUGCACCAUAU-----------------
((((((((((((...))))....((.(.(((((.......))))).).))(((((.......)))))))))))))......----------------- ( -29.90)
>consensus
UGCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCAUAU_________________
((((((((((((...))))....((.(.(((((.......))))).).))(((((.......)))))))))))))....................... (-31.96 = -30.36 +  -1.60)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:26 2006