Sequence ID | Eco_1 |
---|---|
Location | 226,304 – 226,424 |
Length | 120 |
Max. P | 0.755195 |
Location | 226,304 – 226,424 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.72 |
Mean single sequence MFE | -28.42 |
Consensus MFE | -23.43 |
Energy contribution | -23.24 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.07 |
Structure conservation index | 0.82 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 226304 120 - 1 CUGUCCAAUCAAUUUACCUUAGAGCCACGGCAGGGGCCCUGCCCAUCCACACCCUGCUCUUGAAUCAAUCCUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACCGGAU ..((((...............((..((.(((((((................)))))).).))..))............(((((((((...(((....)))...)))))))))....)))) ( -28.19) >Sfl_1 559 120 - 1 CUGUCCAAUCAAUUUACCUUAGAGCCACGGCAGGGGCCCUGCCCAUCCACACCCUGCUCUUGAAUCAAUCCUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACCGGAU ..((((...............((..((.(((((((................)))))).).))..))............(((((((((...(((....)))...)))))))))....)))) ( -28.19) >Sty_1 561 120 - 1 CUGACCAAUCAGUUUACCUUAGAGCCACGGCAGGGGCCCAGCCCAUCCACACCCUGCUCUUGAAUCAAUCGUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACGAGAU ((((....)))).........((..((.(((((((................)))))).).))..))....(((((...(((((((((...(((....)))...)))))))))...))))) ( -29.79) >Ype_1 558 120 - 1 CUGUCCAAUCAAGUUACCUAAGAGCCACGGCAGGGGCCCAGCCCAUCCACACUCUGCUCUUGAAUCAAUCCUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACACAGU ((((....(((((.......((((....((...((((...))))..))...))))...)))))...............(((((((((...(((....)))...)))))))))...)))). ( -27.50) >consensus CUGUCCAAUCAAUUUACCUUAGAGCCACGGCAGGGGCCCAGCCCAUCCACACCCUGCUCUUGAAUCAAUCCUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACCGGAU .....................((..((.(((((((................)))))).).))..))............(((((((((...(((....)))...)))))))))........ (-23.43 = -23.24 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:46 2006