Sequence ID | Eco_1 |
---|---|
Location | 4,638,566 – 4,638,686 |
Length | 120 |
Max. P | 0.858968 |
Location | 4,638,566 – 4,638,686 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -35.37 |
Consensus MFE | -30.75 |
Energy contribution | -31.20 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.60 |
Structure conservation index | 0.87 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4638566 120 - 1 CCAGUCACUUUUUGACUGGCUAGGUAUGUAAAUGCGUUCAUCGCGUAUGUCCAAUACCUAGGAUUAACAAUGGGGUAUCAUAGAUAAAUGUUCUUUCUGAUACAGGCAGCUUCGUAGCAA (((((((.....)))))))((((((((....((((((.....)))))).....)))))))).............((((((.(((.......)))...)))))).....(((....))).. ( -35.70) >Sfl_1 1 120 - 1 CCAGUCACUUUUUGACUGGCUAGGUAUGUAAAUGCGUUCAUCGCGUAUGUCCAAUACCUAGGAUUAACAAUGGGGUAUCAUAGAUAAAUGUUCUUUCUGAUACAGGCAGCUUCGUAGCAA (((((((.....)))))))((((((((....((((((.....)))))).....)))))))).............((((((.(((.......)))...)))))).....(((....))).. ( -35.70) >Sty_1 1 120 - 1 GCAGUCUCUUUUUGACUGGCUAGAUAUGUAAAUGCGUUCAUCGCGUAUGUCCAAUACCUAGGAUUAACAAUGGGGUAUCAUAGAUAAAUGUUCUUUUUGAUACAGGACGUUUCGUAGCAA .(((((.......)))))((((((.......(((((.....)))))((((((....((((..........))))((((((.(((.......)))...)))))).)))))).)).)))).. ( -34.70) >consensus CCAGUCACUUUUUGACUGGCUAGGUAUGUAAAUGCGUUCAUCGCGUAUGUCCAAUACCUAGGAUUAACAAUGGGGUAUCAUAGAUAAAUGUUCUUUCUGAUACAGGCAGCUUCGUAGCAA ((((((.......))))))((((((((....((((((.....)))))).....)))))))).............((((((.(((.......)))...)))))).....(((....))).. (-30.75 = -31.20 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:27 2006