Sequence ID | Eco_1 |
---|---|
Location | 4,604,232 – 4,604,352 |
Length | 120 |
Max. P | 0.761260 |
Location | 4,604,232 – 4,604,352 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -46.13 |
Consensus MFE | -45.80 |
Energy contribution | -45.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.99 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4604232 120 + 1 UUCUAACCGAACAACUCCAGUGCGCCCAAGGGCGGUAUGUGGAAGGACUUUUACACGCCGCGCCCAAAGCCGAAUCAGGACCGGCGAAUGGCCGGGCUCACGAUUGUUGGUGUUGACCCU .((..(((.(((((.((..(((.((((....((((..(((((((....)))))))..))))(((....((((.........))))....))).)))).)))))))))))))...)).... ( -46.40) >Sfl_1 161 120 + 1 UUCUAACCGAACAACUCCAGUGCGCCCAAGGGCGGUAUGUGGAAGGACUUUUACACGCCGCGCCCAAAGCCGAAUCAGGACCGGCGAAUGGCCGGGCUCACAAUUGUUGGUGUUGACCCU ...........((((.((((((.((((....((((..(((((((....)))))))..))))(((....((((.........))))....))).)))).)))......))).))))..... ( -45.80) >Sty_1 112 119 + 1 UUCUAACCGAACAACUCCAGUGCGCCCAAGGGCGGUAUGUGGAAGGACUUUUACACGCCGCGCCCAAAGCCGAAUCAGGACCGGCGAAUGGCCGGGCUCACGAUUG-UGGUGUUGACCCU ...........((((.((((((.((((....((((..(((((((....)))))))..))))(((....((((.........))))....))).)))).))).....-))).))))..... ( -46.20) >consensus UUCUAACCGAACAACUCCAGUGCGCCCAAGGGCGGUAUGUGGAAGGACUUUUACACGCCGCGCCCAAAGCCGAAUCAGGACCGGCGAAUGGCCGGGCUCACGAUUGUUGGUGUUGACCCU ...........((((.((((((.((((....((((..(((((((....)))))))..))))(((....((((.........))))....))).)))).)))......))).))))..... (-45.80 = -45.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:19 2006