Sequence ID | Eco_1 |
---|---|
Location | 4,494,393 – 4,494,513 |
Length | 120 |
Max. P | 0.583536 |
Location | 4,494,393 – 4,494,513 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -35.20 |
Consensus MFE | -35.20 |
Energy contribution | -35.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 1.00 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583536 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4494393 120 + 1 ACUACGACUGGCCGUUCCCACGCAUCAGUGCGUCUCACUUAGAGGACGAGCGCUGGACCAUUAACCUAAUGAUCGCGAUGGGAAAUUACUCACCUUACUAACUGAAGUUACGGUACUGAC ..........(((((((((((((..((((((.((((.....))))....))))))((.(((((...))))).))))).))))))..............((((....))))))))...... ( -35.20) >Sfl_1 25 120 + 1 ACUACGACUGGCCGUUCCCACGCAUCAGUGCGUCUCACUUAGAGGACGAGCGCUGGACCAUUAACCUAAUGAUCGCGAUGGGAAAUUACUCACCUUACUAACUGAAGUUACGGUACUGAC ..........(((((((((((((..((((((.((((.....))))....))))))((.(((((...))))).))))).))))))..............((((....))))))))...... ( -35.20) >Sty_1 25 120 + 1 ACUACGACUGGCCGUUCCCACGCAUCAGUGCGUCUCACUUAGAGGACGAGCGCUGGACCAUUAACCUAAUGAUCGCGAUGGGAAAUUACUCACCUUACUAACUGAAGUUACGGUACUGAC ..........(((((((((((((..((((((.((((.....))))....))))))((.(((((...))))).))))).))))))..............((((....))))))))...... ( -35.20) >consensus ACUACGACUGGCCGUUCCCACGCAUCAGUGCGUCUCACUUAGAGGACGAGCGCUGGACCAUUAACCUAAUGAUCGCGAUGGGAAAUUACUCACCUUACUAACUGAAGUUACGGUACUGAC ..........(((((((((((((..((((((.((((.....))))....))))))((.(((((...))))).))))).))))))..............((((....))))))))...... (-35.20 = -35.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:15 2006