Sequence ID | Eco_1 |
---|---|
Location | 4,390,381 – 4,390,461 |
Length | 80 |
Max. P | 0.939531 |
Location | 4,390,381 – 4,390,461 |
---|---|
Length | 80 |
Sequences | 6 |
Columns | 80 |
Reading direction | forward |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -27.77 |
Consensus MFE | -28.18 |
Energy contribution | -27.93 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -0.89 |
Structure conservation index | 1.01 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4390381 80 + 1 ACAAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC ............((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.50) >Hin_1 1 78 + 1 --AAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACCGGGGGACAUCGUACCUCC --..........((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.80) >Lpn_1 1 80 + 1 ACAAGGCGUAUAUGCUGGUGGCUUAUCGAACCUGGAUGCGAGCUUGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC ....((((....))))((.((.....(((.((..(.((((((((......)).))).))))..)).....)))..)).)) ( -18.80) >Sfl_1 1 80 + 1 AAAAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC ............((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.50) >Sty_1 1 78 + 1 --AAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC --..........((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.50) >Ype_1 1 80 + 1 ACAAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC ............((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.50) >consensus ACAAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC ............((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) (-28.18 = -27.93 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:03 2006