Locus 42

Sequence ID	Eco_1
Location	4,209,051 – 4,209,171
Length	120
Max. P	0.607894

overview

Window 9

Location	4,209,051 – 4,209,171
Length	120
Sequences	4
Columns	120
Reading direction	reverse
Mean pairwise identity	99.58
Mean single sequence MFE	-36.52
Consensus MFE	-35.70
Energy contribution	-35.95
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-1.87
Structure conservation index	0.98
SVM decision value	0.15
SVM RNA-class probability	0.607894
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 4209051 120 - 1
GGGCGUAUUCCAACUUUGUCUGUGAUACUCCUGCGUCGUCUGACGUGGUAUCAGUGUUGCGGGCCCUAACGUCCCGAUUAGUCUAUCUCGUAGCACUGCAUAUCAUCAAUCUGACAUCUC
(((.((((..((........))..)))).))).....(((.((.(((((((((((((((((((..(....)..))(((......))).)))))))))).)))))))...)).)))..... ( -37.50)
>Sfl_1 999 120 - 1
GGGCGUAUUCCAACUUUGUCUGUGAUACUCCUGCGUCGUCUGACGUGGUAUCAGUGUUGCGGGCCCUAACGUCCCGAUUAGUCUAUCUCGUAGCACUGCAUAUCAUCAAUCUGACAUCUC
(((.((((..((........))..)))).))).....(((.((.(((((((((((((((((((..(....)..))(((......))).)))))))))).)))))))...)).)))..... ( -37.50)
>Sty_1 1001 120 - 1
GGGCGUAUUCCAACUUUGUCUGUGAUACUCCUGCGUCGUCUGACGUGGUAUCAGUGUUGCGGGCCCUAACGUCCCGAUUAGUCUAUCUCGUAGCACUGCAUAUCAUCAAUCUGACAUCUC
(((.((((..((........))..)))).))).....(((.((.(((((((((((((((((((..(....)..))(((......))).)))))))))).)))))))...)).)))..... ( -37.50)
>Ype_1 998 120 - 1
GGGCGUAUUCCAACUUUGUCUGUGAUACUCCUGCGUCGUCUGACGUGGUAUCAGUGUUGCGUGCCCUAACGUCCCGAUUAGUCUAUCUCGUAGCACUGCAUAUCAUCAAUCUGACAUCUC
(((.((((..((........))..)))).))).....(((.((.(((((((((((((((((((..((((((...)).))))..))...)))))))))).)))))))...)).)))..... ( -33.60)
>consensus
GGGCGUAUUCCAACUUUGUCUGUGAUACUCCUGCGUCGUCUGACGUGGUAUCAGUGUUGCGGGCCCUAACGUCCCGAUUAGUCUAUCUCGUAGCACUGCAUAUCAUCAAUCUGACAUCUC
(((.((((..((........))..)))).))).....(((.((.(((((((((((((((((((..(....)..))(((......))).)))))))))).)))))))...)).)))..... (-35.70 = -35.95 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:00 2006