Sequence ID | Eco_1 |
---|---|
Location | 4,206,448 – 4,206,568 |
Length | 120 |
Max. P | 0.532626 |
Location | 4,206,448 – 4,206,568 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -44.27 |
Consensus MFE | -40.17 |
Energy contribution | -40.83 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.91 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532626 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4206448 120 - 1 CACAGCACGGCUUAUUUUACGGGGGCCGCACGGUUGUUGCCCGACCUGUCCGGGGUCAUAGUCCGCUUACGCACGGACACGUGUGGAGCCCCUCCUUUGACUUUCAUGUCAACGCUUUUA ...(((..............((((.(((((((((((.....)))))(((((((((......)))((....)).)))))).))))))..))))....(((((......))))).))).... ( -44.20) >Hin_1 278 120 - 1 CACAGCACAGCUUACUUCAGGGGGGCCCCACGGUUGUUGCCCGACCUGUCCGGGGUCAUAGUCCGCUUACGCACGGACACGUGUGGAGCCCCUCCUUUGACUUUCAUGUCAACCCUUUUG ..................((((((((.(((((((((.....)))))(((((((((......)))((....)).))))))...)))).))))).)))(((((......)))))........ ( -44.40) >Ype_1 281 120 - 1 CACAGCACGGCUUAUUUUACGGGGGCCGCACGGUUGUUGCCCGACCUGUCCGGGGUCAUAGUCCGCUUACGCACGGACACGUGUGGAGCCCCUCCUUUGACUUUCAUGUCAACGCUUUUA ...(((..............((((.(((((((((((.....)))))(((((((((......)))((....)).)))))).))))))..))))....(((((......))))).))).... ( -44.20) >consensus CACAGCACGGCUUAUUUUACGGGGGCCGCACGGUUGUUGCCCGACCUGUCCGGGGUCAUAGUCCGCUUACGCACGGACACGUGUGGAGCCCCUCCUUUGACUUUCAUGUCAACGCUUUUA ...(((..............((((.(((((((((((.....)))))(((((((((......)))((....)).)))))).))))))..))))....(((((......))))).))).... (-40.17 = -40.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:12:51 2006