Locus 4

Sequence ID Eco_1
Location 225,986 – 226,106
Length 120
Max. P 0.981228
window5

overview

Window 5

Location 225,986 – 226,106
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.72
Mean single sequence MFE -49.17
Consensus MFE -45.35
Energy contribution -44.73
Covariance contribution -0.62
Combinations/Pair 1.16
Mean z-score -2.51
Structure conservation index 0.92
SVM decision value 1.88
SVM RNA-class probability 0.981228
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 225986 120 + 1
UAUGGGGGACUAUAGACGGAGCCACACUAACAAGAUUACAUGCGCGCGGUGAGCAAAGUGCGCGCAAACCGACUCCGGUAAAGGUGCUCGGGGGCGGUGAGUGCGGCGGACCUCCAACGA
(((((....)))))..((..(((.((((............((((((((.(......).)))))))).((((.((((((((....))).))))).)))).)))).)))((....))..)). ( -50.50)
>Sfl_1 241 120 + 1
UAUGGGGGACUAUAGACGGAGCCACACUAACAAGAUUACAUGCGCGCGGUGAGCAAAGUGCGCGCAAACCGACUCCGGUAAAGGUGCUCGGGCGCGGUGAGUGCGGUGGACCUCCAACGA
..((((((.((((...(.((((.((.((............((((((((.(......).)))))))).((((....))))..)))))))).)((((.....)))).)))).)))))).... ( -47.10)
>Sty_1 241 120 + 1
UAUGGGGGACUAUAGACGGAGCCACACUAACAAGAUCACAUGCGCGUGGUGAGCAAAAUGCGCGCAAACCGACUCCGGUAAAGGUGCUCGGGGGCGGUGAGUGCGGCGGACCUCCAACGA
(((((....)))))..((..(((.((((............(((((((..(......)..))))))).((((.((((((((....))).))))).)))).)))).)))((....))..)). ( -46.00)
>Ype_1 241 120 + 1
UAUGGGGGACUAUAGACGGAGCCACACUAACAAGAUUACAUGCGCGCGGUGAGCAAGUUGCGCGCAAACCGACUCCGGUAAAGGUAUUUUGGGGCGGUGAGUGUGGCGGACCUCCACCGA
(((((....)))))..(((.((((((((............(((((((..(......)..))))))).((((.((((((..........)))))))))).))))))))((....)).))). ( -53.10)
>consensus
UAUGGGGGACUAUAGACGGAGCCACACUAACAAGAUUACAUGCGCGCGGUGAGCAAAGUGCGCGCAAACCGACUCCGGUAAAGGUGCUCGGGGGCGGUGAGUGCGGCGGACCUCCAACGA
(((((....)))))..((..(((.((((............((((((((.(......).)))))))).((((.((((((((....))).))))).)))).)))).)))((....))..)). (-45.35 = -44.73 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:42 2006