Locus 39

Sequence ID Eco_1
Location 4,206,104 – 4,206,224
Length 120
Max. P 0.708165
window55

overview

Window 5

Location 4,206,104 – 4,206,224
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -29.40
Consensus MFE -29.40
Energy contribution -29.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 1.00
SVM decision value 0.37
SVM RNA-class probability 0.708165
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4206104 120 - 1
UAAACUAUCUACCACCAGUCAUUUCCUAGAGGAAUUCCCUUUGGGAACAUUGGUCAUUGUUAUAAACACAUUUAGAUUUCAGUCAGUUGUGAUAGGCAGUCCAGUUCGAGAACCUGGUAU
...(((..(((..((((((...((((((((((.....)))))))))).))))))............((((....(((....)))...)))).)))..)))((((((....)).))))... ( -29.40)
>Sfl_1 81 120 - 1
UAAACUAUCUACCACCAGUCAUUUCCUAGAGGAAUUCCCUUUGGGAACAUUGGUCAUUGUUAUAAACACAUUUAGAUUUCAGUCAGUUGUGAUAGGCAGUCCAGUUCGAGAACCUGGUAU
...(((..(((..((((((...((((((((((.....)))))))))).))))))............((((....(((....)))...)))).)))..)))((((((....)).))))... ( -29.40)
>Sty_1 81 120 - 1
UAAACUAUCUACCACCAGUCAUUUCCUAGAGGAAUUCCCUUUGGGAACAUUGGUCAUUGUUAUAAACACAUUUAGAUUUCAGUCAGUUGUGAUAGGCAGUCCAGUUCGAGAACCUGGUAU
...(((..(((..((((((...((((((((((.....)))))))))).))))))............((((....(((....)))...)))).)))..)))((((((....)).))))... ( -29.40)
>consensus
UAAACUAUCUACCACCAGUCAUUUCCUAGAGGAAUUCCCUUUGGGAACAUUGGUCAUUGUUAUAAACACAUUUAGAUUUCAGUCAGUUGUGAUAGGCAGUCCAGUUCGAGAACCUGGUAU
...(((..(((..((((((...((((((((((.....)))))))))).))))))............((((....(((....)))...)))).)))..)))((((((....)).))))... (-29.40 = -29.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:12:48 2006